HEADER LIPID TRANSPORT 18-SEP-23 8U8W TITLE CRYSTAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE (NANA) FROM KLEBSIELLA TITLE 2 AEROGENES (PYRUVATE AND HALIDES BOUND) COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLNEURAMINATE LYASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA AEROGENES KCTC 2190; SOURCE 3 ORGANISM_TAXID: 1028307; SOURCE 4 GENE: NANA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: KLAEA.01563.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, N-ACETYLNEURAMINATE LYASE, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 15-NOV-23 8U8W 1 LINK ATOM REVDAT 1 27-SEP-23 8U8W 0 JRNL AUTH S.LOVELL,L.LIU,S.SEIBOLD,K.P.BATTAILE JRNL TITL CRYSTAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE (NANA) FROM JRNL TITL 2 KLEBSIELLA AEROGENES (PYRUVATE AND HALIDES BOUND) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_4933: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6000 - 4.8000 1.00 3003 151 0.1889 0.2216 REMARK 3 2 4.8000 - 3.8100 1.00 2829 136 0.1362 0.1380 REMARK 3 3 3.8100 - 3.3300 1.00 2736 165 0.1564 0.1703 REMARK 3 4 3.3300 - 3.0300 1.00 2745 144 0.1635 0.1883 REMARK 3 5 3.0300 - 2.8100 1.00 2723 141 0.1652 0.1836 REMARK 3 6 2.8100 - 2.6400 1.00 2702 143 0.1575 0.2000 REMARK 3 7 2.6400 - 2.5100 1.00 2722 120 0.1570 0.2245 REMARK 3 8 2.5100 - 2.4000 1.00 2715 126 0.1538 0.1643 REMARK 3 9 2.4000 - 2.3100 1.00 2666 141 0.1481 0.1846 REMARK 3 10 2.3100 - 2.2300 1.00 2677 135 0.1565 0.1806 REMARK 3 11 2.2300 - 2.1600 1.00 2665 140 0.1617 0.1973 REMARK 3 12 2.1600 - 2.1000 1.00 2664 142 0.1587 0.1815 REMARK 3 13 2.1000 - 2.0400 1.00 2663 144 0.1660 0.2028 REMARK 3 14 2.0400 - 1.9900 0.99 2647 125 0.1781 0.2023 REMARK 3 15 1.9900 - 1.9500 0.99 2658 113 0.1827 0.1937 REMARK 3 16 1.9500 - 1.9100 0.99 2658 141 0.2077 0.2183 REMARK 3 17 1.9100 - 1.8700 0.99 2614 146 0.2173 0.2570 REMARK 3 18 1.8700 - 1.8300 0.99 2633 133 0.2244 0.2397 REMARK 3 19 1.8300 - 1.8000 0.99 2616 157 0.2447 0.2651 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2433 REMARK 3 ANGLE : 0.995 3298 REMARK 3 CHIRALITY : 0.053 372 REMARK 3 PLANARITY : 0.010 430 REMARK 3 DIHEDRAL : 14.150 897 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0118 -3.7265 25.5336 REMARK 3 T TENSOR REMARK 3 T11: 0.3458 T22: 0.2973 REMARK 3 T33: 0.2915 T12: 0.0597 REMARK 3 T13: -0.0802 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 5.2950 L22: 3.0891 REMARK 3 L33: 4.6274 L12: 1.7539 REMARK 3 L13: -1.8053 L23: -1.2940 REMARK 3 S TENSOR REMARK 3 S11: -0.1531 S12: -0.0730 S13: 0.2630 REMARK 3 S21: 0.0858 S22: 0.0762 S23: 0.0283 REMARK 3 S31: 0.1677 S32: 0.1944 S33: 0.0351 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2854 -0.3231 29.3729 REMARK 3 T TENSOR REMARK 3 T11: 0.4127 T22: 0.3017 REMARK 3 T33: 0.2859 T12: -0.0297 REMARK 3 T13: -0.0719 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.0987 L22: 1.7152 REMARK 3 L33: 1.6334 L12: -1.0082 REMARK 3 L13: -0.1703 L23: -0.2674 REMARK 3 S TENSOR REMARK 3 S11: -0.0577 S12: -0.1623 S13: 0.0912 REMARK 3 S21: 0.2493 S22: -0.0027 S23: -0.1328 REMARK 3 S31: -0.0754 S32: 0.2229 S33: 0.0617 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9419 11.9560 20.4138 REMARK 3 T TENSOR REMARK 3 T11: 0.3779 T22: 0.2241 REMARK 3 T33: 0.3211 T12: -0.0277 REMARK 3 T13: 0.0050 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 3.7964 L22: 1.3982 REMARK 3 L33: 1.9556 L12: -1.2250 REMARK 3 L13: 1.0648 L23: -0.6243 REMARK 3 S TENSOR REMARK 3 S11: 0.1496 S12: -0.0000 S13: 0.1371 REMARK 3 S21: 0.2031 S22: -0.1085 S23: -0.0802 REMARK 3 S31: -0.2881 S32: 0.0609 S33: -0.0267 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9141 8.0499 10.3979 REMARK 3 T TENSOR REMARK 3 T11: 0.3313 T22: 0.3139 REMARK 3 T33: 0.3177 T12: -0.0539 REMARK 3 T13: -0.0210 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 0.7807 L22: 1.7633 REMARK 3 L33: 2.9933 L12: -1.0258 REMARK 3 L13: -0.6405 L23: 1.1470 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: 0.1002 S13: 0.0559 REMARK 3 S21: 0.0807 S22: -0.1268 S23: 0.0467 REMARK 3 S31: -0.1279 S32: -0.1446 S33: 0.0272 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1703 -5.6963 11.8145 REMARK 3 T TENSOR REMARK 3 T11: 0.2982 T22: 0.4622 REMARK 3 T33: 0.4038 T12: 0.0192 REMARK 3 T13: -0.0808 T23: 0.0713 REMARK 3 L TENSOR REMARK 3 L11: 3.6999 L22: 3.4328 REMARK 3 L33: 6.0814 L12: 1.1115 REMARK 3 L13: -3.0746 L23: -2.4659 REMARK 3 S TENSOR REMARK 3 S11: 0.1026 S12: -0.2915 S13: -0.2148 REMARK 3 S21: 0.2619 S22: -0.2937 S23: -0.5347 REMARK 3 S31: -0.0124 S32: 0.8275 S33: 0.1781 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2869 -12.7496 6.1732 REMARK 3 T TENSOR REMARK 3 T11: 0.4333 T22: 0.4114 REMARK 3 T33: 0.3483 T12: 0.0821 REMARK 3 T13: -0.0342 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 5.8651 L22: 3.7651 REMARK 3 L33: 3.8270 L12: 2.7051 REMARK 3 L13: -3.1839 L23: -2.4397 REMARK 3 S TENSOR REMARK 3 S11: -0.0775 S12: 0.3208 S13: -0.1036 REMARK 3 S21: -0.1408 S22: 0.0021 S23: -0.2296 REMARK 3 S31: 0.4470 S32: 0.2187 S33: 0.0462 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5544 -19.2014 20.1906 REMARK 3 T TENSOR REMARK 3 T11: 0.3893 T22: 0.2684 REMARK 3 T33: 0.3142 T12: 0.0593 REMARK 3 T13: -0.0366 T23: 0.0670 REMARK 3 L TENSOR REMARK 3 L11: 2.7727 L22: 2.1946 REMARK 3 L33: 2.6803 L12: -1.0147 REMARK 3 L13: -0.7208 L23: 0.1471 REMARK 3 S TENSOR REMARK 3 S11: -0.0883 S12: -0.1355 S13: -0.3489 REMARK 3 S21: 0.0008 S22: -0.0797 S23: -0.0391 REMARK 3 S31: 0.3085 S32: 0.3814 S33: 0.1648 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8U8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.40 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 39.50 REMARK 200 R MERGE FOR SHELL (I) : 2.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS B11: 20%(V/V) GLYCEROL, 10% REMARK 280 W/V PEG 4000, 100 MM TRIS/BICINE, PH 8.5, 30 MM NAF, 30 MM NABR REMARK 280 AND 30 MM NAI. KLAEA.01563.A.B1.PW39186 AT 18.6 MG/ML. 2MM REMARK 280 PYRUVATE ADDED TO THE PROTEIN PRIOR TO CRYSTALLIZATION. PLATE REMARK 280 13191 WELL B11 DROP 2. PUCK: PSL-1309, CRYO: DIRECT, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.00800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.50400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 137.00800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.50400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 137.00800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 68.50400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 137.00800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.50400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -97.41300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -97.41300 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 1 CG SD CE REMARK 470 GLN A 294 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 5.70 -66.41 REMARK 500 TYR A 110 -68.34 70.10 REMARK 500 LYS A 146 77.97 -118.43 REMARK 500 MET A 213 50.66 -157.48 REMARK 500 ASP A 228 79.92 -101.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 40 O REMARK 620 2 THR A 75 OG1 84.1 REMARK 620 3 HOH A 491 O 94.7 86.1 REMARK 620 4 HOH A 505 O 164.6 80.6 84.8 REMARK 620 5 HOH A 578 O 99.0 175.8 96.5 96.3 REMARK 620 6 HOH A 603 O 85.2 90.8 176.9 94.5 86.6 REMARK 620 N 1 2 3 4 5 DBREF1 8U8W A 1 297 UNP A0A0H3FJT8_KLEAK DBREF2 8U8W A A0A0H3FJT8 1 297 SEQADV 8U8W MET A -7 UNP A0A0H3FJT INITIATING METHIONINE SEQADV 8U8W ALA A -6 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U8W HIS A -5 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U8W HIS A -4 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U8W HIS A -3 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U8W HIS A -2 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U8W HIS A -1 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U8W HIS A 0 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U8W ALA A 93 UNP A0A0H3FJT VAL 93 ENGINEERED MUTATION SEQRES 1 A 305 MET ALA HIS HIS HIS HIS HIS HIS MET VAL SER HIS LEU SEQRES 2 A 305 ARG GLY VAL MET PRO ALA LEU LEU THR PRO PHE ASP ALA SEQRES 3 A 305 GLN GLN ASN ILE ASP ARG ALA SER LEU ARG ARG LEU VAL SEQRES 4 A 305 ARG PHE ASN ILE GLU GLN GLY VAL ASP GLY VAL TYR VAL SEQRES 5 A 305 GLY GLY SER THR GLY GLU ALA PHE VAL GLN SER LEU SER SEQRES 6 A 305 GLU ARG GLU GLU VAL LEU GLU ILE VAL ALA GLU GLU ALA SEQRES 7 A 305 LYS GLY LYS ILE THR LEU ILE ALA HIS VAL GLY CYS VAL SEQRES 8 A 305 SER THR ALA GLU SER GLN GLN LEU ALA ALA ALA ALA LYS SEQRES 9 A 305 ARG TYR GLY PHE ASP ALA VAL SER ALA VAL THR PRO PHE SEQRES 10 A 305 TYR TYR PRO PHE SER PHE GLU GLU HIS CYS ASP HIS TYR SEQRES 11 A 305 ARG ALA ILE ILE ASP SER ALA ASP GLY ILE PRO MET VAL SEQRES 12 A 305 VAL TYR ASN ILE PRO ALA LEU SER GLY VAL LYS LEU THR SEQRES 13 A 305 LEU GLU GLN ILE ASN GLN LEU VAL THR LEU PRO GLY VAL SEQRES 14 A 305 GLY ALA LEU LYS GLN THR SER GLY ASP LEU TYR GLN MET SEQRES 15 A 305 GLU GLN ILE ARG ARG ALA HIS PRO GLU LEU VAL LEU TYR SEQRES 16 A 305 ASN GLY TYR ASP GLU ILE PHE ALA SER GLY LEU LEU ALA SEQRES 17 A 305 GLY ALA ASP GLY GLY ILE GLY SER THR TYR ASN ILE MET SEQRES 18 A 305 ALA TRP ARG TYR LEU GLY ILE VAL GLN ALA LEU LYS GLU SEQRES 19 A 305 GLY ASP THR ALA LYS ALA GLN GLN LEU GLN HIS GLU CYS SEQRES 20 A 305 ASN LYS VAL ILE ASP LEU LEU VAL LYS VAL GLY VAL PHE SEQRES 21 A 305 ARG GLY LEU LYS THR VAL LEU HIS TYR MET ASP VAL LEU SEQRES 22 A 305 SER VAL PRO LEU CYS ARG LYS PRO PHE ALA PRO VAL GLU SEQRES 23 A 305 ASP LYS PHE GLN ALA GLU LEU LYS ALA LEU ALA GLN GLN SEQRES 24 A 305 LEU MET GLN GLU ARG GLY HET NA A 301 1 HET CL A 302 1 HET CL A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET PYR A 306 5 HET GOL A 307 6 HET GOL A 308 6 HET GOL A 309 6 HET GOL A 310 6 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION HETNAM PYR PYRUVIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA NA 1+ FORMUL 3 CL 2(CL 1-) FORMUL 5 IOD 2(I 1-) FORMUL 7 PYR C3 H4 O3 FORMUL 8 GOL 4(C3 H8 O3) FORMUL 12 HOH *275(H2 O) HELIX 1 AA1 VAL A 2 ARG A 6 5 5 HELIX 2 AA2 ASP A 23 GLN A 37 1 15 HELIX 3 AA3 GLU A 50 GLN A 54 5 5 HELIX 4 AA4 SER A 55 LYS A 71 1 17 HELIX 5 AA5 SER A 84 TYR A 98 1 15 HELIX 6 AA6 SER A 114 ASP A 130 1 17 HELIX 7 AA7 ILE A 139 GLY A 144 1 6 HELIX 8 AA8 THR A 148 THR A 157 1 10 HELIX 9 AA9 ASP A 170 HIS A 181 1 12 HELIX 10 AB1 TYR A 190 GLU A 192 5 3 HELIX 11 AB2 ILE A 193 GLY A 201 1 9 HELIX 12 AB3 THR A 209 GLY A 227 1 19 HELIX 13 AB4 ASP A 228 GLY A 250 1 23 HELIX 14 AB5 GLY A 250 MET A 262 1 13 HELIX 15 AB6 GLU A 278 LYS A 280 5 3 HELIX 16 AB7 PHE A 281 ARG A 296 1 16 SHEET 1 AA1 8 VAL A 8 PRO A 10 0 SHEET 2 AA1 8 GLY A 204 GLY A 207 1 O GLY A 205 N MET A 9 SHEET 3 AA1 8 VAL A 185 ASN A 188 1 N ASN A 188 O GLY A 204 SHEET 4 AA1 8 VAL A 161 GLN A 166 1 N GLN A 166 O TYR A 187 SHEET 5 AA1 8 MET A 134 ASN A 138 1 N VAL A 136 O LYS A 165 SHEET 6 AA1 8 ALA A 102 VAL A 106 1 N VAL A 103 O VAL A 135 SHEET 7 AA1 8 THR A 75 HIS A 79 1 N ALA A 78 O ALA A 102 SHEET 8 AA1 8 GLY A 41 VAL A 44 1 N VAL A 44 O HIS A 79 LINK NZ ALYS A 165 CA APYR A 306 1555 1555 1.43 LINK O ASP A 40 NA NA A 301 1555 1555 2.29 LINK OG1 THR A 75 NA NA A 301 1555 1555 2.38 LINK NA NA A 301 O HOH A 491 1555 1555 2.40 LINK NA NA A 301 O HOH A 505 1555 1555 2.45 LINK NA NA A 301 O HOH A 578 1555 1555 2.39 LINK NA NA A 301 O HOH A 603 1555 1555 2.40 CISPEP 1 LYS A 272 PRO A 273 0 16.55 CRYST1 97.413 97.413 205.512 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010266 0.005927 0.000000 0.00000 SCALE2 0.000000 0.011854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004866 0.00000