HEADER PLANT PROTEIN 18-SEP-23 8U8Z TITLE CRYO-EM STRUCTURE OF PSBPHP IN PR STATE, EXTENDED DHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE PV. TOMATO STR. DC3000; SOURCE 3 ORGANISM_TAXID: 223283; SOURCE 4 GENE: BPHP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS PSEUDOMONAS SYRINGAE BACTERIOPHYTOCHROME, PLANT PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR K.BASORE,E.S.BURGIE,D.VIERSTRA REVDAT 2 23-OCT-24 8U8Z 1 REMARK REVDAT 1 21-AUG-24 8U8Z 0 JRNL AUTH E.S.BURGIE,K.BASORE,M.J.RAU,B.SUMMERS,A.J.MICKLES,V.GRIGURA, JRNL AUTH 2 J.A.J.FITZPATRICK,R.D.VIERSTRA JRNL TITL SIGNALING BY A BACTERIAL PHYTOCHROME HISTIDINE KINASE JRNL TITL 2 INVOLVES A CONFORMATIONAL CASCADE REORGANIZING THE DIMERIC JRNL TITL 3 PHOTORECEPTOR. JRNL REF NAT COMMUN V. 15 6853 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39127720 JRNL DOI 10.1038/S41467-024-50412-Y REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, PHENIX, EPU, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.250 REMARK 3 NUMBER OF PARTICLES : 119594 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8U8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277609. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PSBPHP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.50 REMARK 245 SAMPLE SUPPORT DETAILS : 2 ROUNDS OF GLOW-DISCHARGE: REMARK 245 1ST: COPPER SIDE WITH AIR 2ND: REMARK 245 CARBON SIDE WITH ADDED AMYLAMINE REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 9173 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 0.01 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5178.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 96000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : PRELIMINARY GRID SCREENING REMARK 245 WAS PERFORMED MANUALLY. REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 PHE A 9 REMARK 465 GLU A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 460 REMARK 465 SER A 461 REMARK 465 ASP A 462 REMARK 465 ASN A 463 REMARK 465 THR A 464 REMARK 465 LEU A 465 REMARK 465 PRO A 535 REMARK 465 MET A 536 REMARK 465 THR A 537 REMARK 465 VAL A 538 REMARK 465 ILE A 539 REMARK 465 SER A 540 REMARK 465 MET A 541 REMARK 465 LEU A 542 REMARK 465 CYS A 543 REMARK 465 GLY A 544 REMARK 465 MET A 545 REMARK 465 MET A 546 REMARK 465 GLN A 547 REMARK 465 LYS A 548 REMARK 465 SER A 549 REMARK 465 PHE A 550 REMARK 465 SER A 551 REMARK 465 SER A 552 REMARK 465 ASP A 553 REMARK 465 GLY A 554 REMARK 465 PRO A 555 REMARK 465 HIS A 556 REMARK 465 THR A 557 REMARK 465 SER A 558 REMARK 465 ARG A 559 REMARK 465 ARG A 560 REMARK 465 ILE A 561 REMARK 465 SER A 562 REMARK 465 THR A 563 REMARK 465 ALA A 564 REMARK 465 ILE A 565 REMARK 465 ASP A 566 REMARK 465 THR A 567 REMARK 465 MET A 568 REMARK 465 GLN A 569 REMARK 465 GLN A 570 REMARK 465 ALA A 571 REMARK 465 ALA A 572 REMARK 465 SER A 573 REMARK 465 ARG A 574 REMARK 465 MET A 575 REMARK 465 ASN A 576 REMARK 465 VAL A 577 REMARK 465 LEU A 578 REMARK 465 LEU A 579 REMARK 465 GLU A 580 REMARK 465 ASP A 581 REMARK 465 LEU A 582 REMARK 465 LEU A 583 REMARK 465 ASP A 584 REMARK 465 THR A 585 REMARK 465 SER A 586 REMARK 465 LYS A 587 REMARK 465 ILE A 588 REMARK 465 GLU A 589 REMARK 465 ALA A 590 REMARK 465 GLY A 591 REMARK 465 ARG A 592 REMARK 465 TYR A 593 REMARK 465 THR A 594 REMARK 465 ILE A 595 REMARK 465 THR A 596 REMARK 465 PRO A 597 REMARK 465 GLN A 598 REMARK 465 PRO A 599 REMARK 465 LEU A 600 REMARK 465 GLU A 601 REMARK 465 VAL A 602 REMARK 465 SER A 603 REMARK 465 GLN A 604 REMARK 465 ILE A 605 REMARK 465 PHE A 606 REMARK 465 GLU A 607 REMARK 465 GLU A 608 REMARK 465 ALA A 609 REMARK 465 TYR A 610 REMARK 465 THR A 611 REMARK 465 LEU A 612 REMARK 465 LEU A 613 REMARK 465 ALA A 614 REMARK 465 PRO A 615 REMARK 465 LEU A 616 REMARK 465 ALA A 617 REMARK 465 MET A 618 REMARK 465 ASP A 619 REMARK 465 LYS A 620 REMARK 465 SER A 621 REMARK 465 ILE A 622 REMARK 465 GLU A 623 REMARK 465 ILE A 624 REMARK 465 SER A 625 REMARK 465 PHE A 626 REMARK 465 ASN A 627 REMARK 465 ALA A 628 REMARK 465 GLU A 629 REMARK 465 PRO A 630 REMARK 465 ASP A 631 REMARK 465 ILE A 632 REMARK 465 LYS A 633 REMARK 465 VAL A 634 REMARK 465 ASN A 635 REMARK 465 ALA A 636 REMARK 465 ASP A 637 REMARK 465 PRO A 638 REMARK 465 GLU A 639 REMARK 465 ARG A 640 REMARK 465 LEU A 641 REMARK 465 PHE A 642 REMARK 465 GLN A 643 REMARK 465 VAL A 644 REMARK 465 LEU A 645 REMARK 465 SER A 646 REMARK 465 ASN A 647 REMARK 465 LEU A 648 REMARK 465 ILE A 649 REMARK 465 GLY A 650 REMARK 465 ASN A 651 REMARK 465 ALA A 652 REMARK 465 ILE A 653 REMARK 465 LYS A 654 REMARK 465 PHE A 655 REMARK 465 THR A 656 REMARK 465 PRO A 657 REMARK 465 LYS A 658 REMARK 465 LEU A 659 REMARK 465 GLY A 660 REMARK 465 ARG A 661 REMARK 465 ILE A 662 REMARK 465 GLY A 663 REMARK 465 VAL A 664 REMARK 465 ALA A 665 REMARK 465 ALA A 666 REMARK 465 MET A 667 REMARK 465 SER A 668 REMARK 465 ASN A 669 REMARK 465 GLY A 670 REMARK 465 ASP A 671 REMARK 465 GLU A 672 REMARK 465 VAL A 673 REMARK 465 VAL A 674 REMARK 465 PHE A 675 REMARK 465 THR A 676 REMARK 465 VAL A 677 REMARK 465 ARG A 678 REMARK 465 ASP A 679 REMARK 465 SER A 680 REMARK 465 GLY A 681 REMARK 465 GLU A 682 REMARK 465 GLY A 683 REMARK 465 ILE A 684 REMARK 465 PRO A 685 REMARK 465 PRO A 686 REMARK 465 GLU A 687 REMARK 465 GLN A 688 REMARK 465 LEU A 689 REMARK 465 PRO A 690 REMARK 465 HIS A 691 REMARK 465 ILE A 692 REMARK 465 PHE A 693 REMARK 465 GLU A 694 REMARK 465 ARG A 695 REMARK 465 TYR A 696 REMARK 465 TRP A 697 REMARK 465 THR A 698 REMARK 465 VAL A 699 REMARK 465 LYS A 700 REMARK 465 GLU A 701 REMARK 465 GLY A 702 REMARK 465 ASN A 703 REMARK 465 PRO A 704 REMARK 465 THR A 705 REMARK 465 GLY A 706 REMARK 465 THR A 707 REMARK 465 GLY A 708 REMARK 465 LEU A 709 REMARK 465 GLY A 710 REMARK 465 LEU A 711 REMARK 465 TYR A 712 REMARK 465 ILE A 713 REMARK 465 SER A 714 REMARK 465 GLN A 715 REMARK 465 GLY A 716 REMARK 465 ILE A 717 REMARK 465 ILE A 718 REMARK 465 LYS A 719 REMARK 465 ALA A 720 REMARK 465 HIS A 721 REMARK 465 GLY A 722 REMARK 465 GLY A 723 REMARK 465 GLU A 724 REMARK 465 LEU A 725 REMARK 465 ALA A 726 REMARK 465 ALA A 727 REMARK 465 GLN A 728 REMARK 465 SER A 729 REMARK 465 GLN A 730 REMARK 465 VAL A 731 REMARK 465 GLY A 732 REMARK 465 HIS A 733 REMARK 465 GLY A 734 REMARK 465 SER A 735 REMARK 465 GLU A 736 REMARK 465 PHE A 737 REMARK 465 ARG A 738 REMARK 465 PHE A 739 REMARK 465 THR A 740 REMARK 465 VAL A 741 REMARK 465 PRO A 742 REMARK 465 ILE A 743 REMARK 465 ALA A 744 REMARK 465 HIS A 745 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 LYS B 6 REMARK 465 ASP B 7 REMARK 465 ALA B 8 REMARK 465 PHE B 9 REMARK 465 GLU B 10 REMARK 465 ALA B 460 REMARK 465 SER B 461 REMARK 465 ASP B 462 REMARK 465 ASN B 463 REMARK 465 THR B 464 REMARK 465 LEU B 465 REMARK 465 ASN B 534 REMARK 465 PRO B 535 REMARK 465 MET B 536 REMARK 465 THR B 537 REMARK 465 VAL B 538 REMARK 465 ILE B 539 REMARK 465 SER B 540 REMARK 465 MET B 541 REMARK 465 LEU B 542 REMARK 465 CYS B 543 REMARK 465 GLY B 544 REMARK 465 MET B 545 REMARK 465 MET B 546 REMARK 465 GLN B 547 REMARK 465 LYS B 548 REMARK 465 SER B 549 REMARK 465 PHE B 550 REMARK 465 SER B 551 REMARK 465 SER B 552 REMARK 465 ASP B 553 REMARK 465 GLY B 554 REMARK 465 PRO B 555 REMARK 465 HIS B 556 REMARK 465 THR B 557 REMARK 465 SER B 558 REMARK 465 ARG B 559 REMARK 465 ARG B 560 REMARK 465 ILE B 561 REMARK 465 SER B 562 REMARK 465 THR B 563 REMARK 465 ALA B 564 REMARK 465 ILE B 565 REMARK 465 ASP B 566 REMARK 465 THR B 567 REMARK 465 MET B 568 REMARK 465 GLN B 569 REMARK 465 GLN B 570 REMARK 465 ALA B 571 REMARK 465 ALA B 572 REMARK 465 SER B 573 REMARK 465 ARG B 574 REMARK 465 MET B 575 REMARK 465 ASN B 576 REMARK 465 VAL B 577 REMARK 465 LEU B 578 REMARK 465 LEU B 579 REMARK 465 GLU B 580 REMARK 465 ASP B 581 REMARK 465 LEU B 582 REMARK 465 LEU B 583 REMARK 465 ASP B 584 REMARK 465 THR B 585 REMARK 465 SER B 586 REMARK 465 LYS B 587 REMARK 465 ILE B 588 REMARK 465 GLU B 589 REMARK 465 ALA B 590 REMARK 465 GLY B 591 REMARK 465 ARG B 592 REMARK 465 TYR B 593 REMARK 465 THR B 594 REMARK 465 ILE B 595 REMARK 465 THR B 596 REMARK 465 PRO B 597 REMARK 465 GLN B 598 REMARK 465 PRO B 599 REMARK 465 LEU B 600 REMARK 465 GLU B 601 REMARK 465 VAL B 602 REMARK 465 SER B 603 REMARK 465 GLN B 604 REMARK 465 ILE B 605 REMARK 465 PHE B 606 REMARK 465 GLU B 607 REMARK 465 GLU B 608 REMARK 465 ALA B 609 REMARK 465 TYR B 610 REMARK 465 THR B 611 REMARK 465 LEU B 612 REMARK 465 LEU B 613 REMARK 465 ALA B 614 REMARK 465 PRO B 615 REMARK 465 LEU B 616 REMARK 465 ALA B 617 REMARK 465 MET B 618 REMARK 465 ASP B 619 REMARK 465 LYS B 620 REMARK 465 SER B 621 REMARK 465 ILE B 622 REMARK 465 GLU B 623 REMARK 465 ILE B 624 REMARK 465 SER B 625 REMARK 465 PHE B 626 REMARK 465 ASN B 627 REMARK 465 ALA B 628 REMARK 465 GLU B 629 REMARK 465 PRO B 630 REMARK 465 ASP B 631 REMARK 465 ILE B 632 REMARK 465 LYS B 633 REMARK 465 VAL B 634 REMARK 465 ASN B 635 REMARK 465 ALA B 636 REMARK 465 ASP B 637 REMARK 465 PRO B 638 REMARK 465 GLU B 639 REMARK 465 ARG B 640 REMARK 465 LEU B 641 REMARK 465 PHE B 642 REMARK 465 GLN B 643 REMARK 465 VAL B 644 REMARK 465 LEU B 645 REMARK 465 SER B 646 REMARK 465 ASN B 647 REMARK 465 LEU B 648 REMARK 465 ILE B 649 REMARK 465 GLY B 650 REMARK 465 ASN B 651 REMARK 465 ALA B 652 REMARK 465 ILE B 653 REMARK 465 LYS B 654 REMARK 465 PHE B 655 REMARK 465 THR B 656 REMARK 465 PRO B 657 REMARK 465 LYS B 658 REMARK 465 LEU B 659 REMARK 465 GLY B 660 REMARK 465 ARG B 661 REMARK 465 ILE B 662 REMARK 465 GLY B 663 REMARK 465 VAL B 664 REMARK 465 ALA B 665 REMARK 465 ALA B 666 REMARK 465 MET B 667 REMARK 465 SER B 668 REMARK 465 ASN B 669 REMARK 465 GLY B 670 REMARK 465 ASP B 671 REMARK 465 GLU B 672 REMARK 465 VAL B 673 REMARK 465 VAL B 674 REMARK 465 PHE B 675 REMARK 465 THR B 676 REMARK 465 VAL B 677 REMARK 465 ARG B 678 REMARK 465 ASP B 679 REMARK 465 SER B 680 REMARK 465 GLY B 681 REMARK 465 GLU B 682 REMARK 465 GLY B 683 REMARK 465 ILE B 684 REMARK 465 PRO B 685 REMARK 465 PRO B 686 REMARK 465 GLU B 687 REMARK 465 GLN B 688 REMARK 465 LEU B 689 REMARK 465 PRO B 690 REMARK 465 HIS B 691 REMARK 465 ILE B 692 REMARK 465 PHE B 693 REMARK 465 GLU B 694 REMARK 465 ARG B 695 REMARK 465 TYR B 696 REMARK 465 TRP B 697 REMARK 465 THR B 698 REMARK 465 VAL B 699 REMARK 465 LYS B 700 REMARK 465 GLU B 701 REMARK 465 GLY B 702 REMARK 465 ASN B 703 REMARK 465 PRO B 704 REMARK 465 THR B 705 REMARK 465 GLY B 706 REMARK 465 THR B 707 REMARK 465 GLY B 708 REMARK 465 LEU B 709 REMARK 465 GLY B 710 REMARK 465 LEU B 711 REMARK 465 TYR B 712 REMARK 465 ILE B 713 REMARK 465 SER B 714 REMARK 465 GLN B 715 REMARK 465 GLY B 716 REMARK 465 ILE B 717 REMARK 465 ILE B 718 REMARK 465 LYS B 719 REMARK 465 ALA B 720 REMARK 465 HIS B 721 REMARK 465 GLY B 722 REMARK 465 GLY B 723 REMARK 465 GLU B 724 REMARK 465 LEU B 725 REMARK 465 ALA B 726 REMARK 465 ALA B 727 REMARK 465 GLN B 728 REMARK 465 SER B 729 REMARK 465 GLN B 730 REMARK 465 VAL B 731 REMARK 465 GLY B 732 REMARK 465 HIS B 733 REMARK 465 GLY B 734 REMARK 465 SER B 735 REMARK 465 GLU B 736 REMARK 465 PHE B 737 REMARK 465 ARG B 738 REMARK 465 PHE B 739 REMARK 465 THR B 740 REMARK 465 VAL B 741 REMARK 465 PRO B 742 REMARK 465 ILE B 743 REMARK 465 ALA B 744 REMARK 465 HIS B 745 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 135 NH1 ARG B 138 2.08 REMARK 500 OE1 GLU B 118 OH TYR B 292 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 54 -3.55 67.16 REMARK 500 GLU A 98 48.14 35.32 REMARK 500 SER A 109 -62.43 -94.97 REMARK 500 PRO A 236 43.31 -79.21 REMARK 500 ASP A 237 -51.00 -120.65 REMARK 500 LEU A 244 51.53 -90.35 REMARK 500 ARG A 371 1.73 80.13 REMARK 500 LEU B 54 -3.60 67.05 REMARK 500 GLU B 98 48.39 34.43 REMARK 500 SER B 109 -62.78 -94.99 REMARK 500 PRO B 236 42.77 -78.95 REMARK 500 LEU B 244 51.43 -90.20 REMARK 500 ARG B 371 1.94 80.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-42030 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF PSBPHP IN PR STATE, EXTENDED DHP DBREF 8U8Z A 1 745 UNP Q885D3 Q885D3_PSESM 1 745 DBREF 8U8Z B 1 745 UNP Q885D3 Q885D3_PSESM 1 745 SEQADV 8U8Z GLY A 0 UNP Q885D3 EXPRESSION TAG SEQADV 8U8Z GLY B 0 UNP Q885D3 EXPRESSION TAG SEQRES 1 A 746 GLY MET SER GLN LEU ASP LYS ASP ALA PHE GLU VAL LEU SEQRES 2 A 746 LEU ALA ASN CYS ALA ASP GLU PRO ILE GLN PHE PRO GLY SEQRES 3 A 746 ALA ILE GLN PRO HIS GLY LEU LEU PHE THR LEU LYS GLU SEQRES 4 A 746 PRO GLU LEU THR ILE LEU GLN VAL SER ALA ASN VAL GLN SEQRES 5 A 746 SER VAL LEU GLY LYS VAL PRO ASP GLN LEU ALA GLY GLN SEQRES 6 A 746 THR LEU ASP CYS VAL LEU GLY ALA GLY TRP ALA GLU VAL SEQRES 7 A 746 ILE ARG SER THR SER ALA ASN ASP SER LEU VAL ASP VAL SEQRES 8 A 746 PRO ARG LEU LEU MET SER VAL GLU GLY VAL GLU PHE GLU SEQRES 9 A 746 ALA LEU LEU HIS ARG SER GLN GLU ALA LEU VAL LEU GLU SEQRES 10 A 746 LEU GLU ILE GLN ASP LYS ALA ALA GLN ALA ILE SER TYR SEQRES 11 A 746 SER GLU ARG THR GLY ASN MET GLY ARG MET LEU ARG GLN SEQRES 12 A 746 LEU HIS ALA ALA ALA ASP LEU GLN THR LEU TYR GLU VAL SEQRES 13 A 746 SER VAL ARG GLU ILE GLN ARG MET THR GLY TYR ASP ARG SEQRES 14 A 746 VAL LEU ILE TYR ARG PHE GLU GLU GLU GLY HIS GLY GLN SEQRES 15 A 746 VAL ILE ALA GLU ALA SER ALA PRO ALA MET GLU LEU PHE SEQRES 16 A 746 ASN GLY LEU PHE PHE PRO ALA SER ASP ILE PRO GLU GLN SEQRES 17 A 746 ALA ARG GLU LEU TYR ARG ARG ASN TRP LEU ARG ILE ILE SEQRES 18 A 746 PRO ASP ALA ASN TYR THR PRO VAL PRO LEU VAL PRO GLN SEQRES 19 A 746 LEU ARG PRO ASP THR GLN GLN GLN LEU ASP LEU SER PHE SEQRES 20 A 746 SER THR LEU ARG SER VAL SER PRO ILE HIS CYS GLN TYR SEQRES 21 A 746 MET LYS ASN MET GLY VAL LEU SER SER MET SER VAL SER SEQRES 22 A 746 LEU ILE GLN GLY GLY LYS LEU TRP GLY LEU ILE SER CYS SEQRES 23 A 746 GLY HIS ARG THR PRO LEU TYR VAL SER HIS GLU LEU ARG SEQRES 24 A 746 SER ALA CYS GLN ALA ILE GLY GLN VAL LEU SER LEU GLN SEQRES 25 A 746 ILE SER ALA MET GLU ALA LEU GLU VAL SER ARG GLN ARG SEQRES 26 A 746 GLU THR LYS ILE GLN THR LEU GLN GLN LEU HIS GLN MET SEQRES 27 A 746 MET ALA THR SER ASP THR ASP VAL PHE ASP GLY LEU ALA SEQRES 28 A 746 GLN GLN PRO GLN LEU LEU MET ASP LEU VAL GLY ALA THR SEQRES 29 A 746 GLY VAL ALA ILE ILE GLU ASP ARG GLN THR HIS CYS TYR SEQRES 30 A 746 GLY ASN CYS PRO GLU PRO SER ASP ILE ARG ALA LEU HIS SEQRES 31 A 746 THR TRP MET MET ALA GLY GLY GLU PRO VAL TYR ALA SER SEQRES 32 A 746 HIS HIS LEU SER SER VAL TYR PRO PRO GLY GLU ALA TYR SEQRES 33 A 746 GLN THR LEU ALA SER GLY VAL LEU ALA MET SER LEU PRO SEQRES 34 A 746 LYS PRO VAL ASP ASN GLY VAL ILE TRP PHE ARG PRO GLU SEQRES 35 A 746 VAL LYS GLN SER VAL GLN TRP SER GLY ASP PRO ASN LYS SEQRES 36 A 746 PRO LEU ASN LEU ASP ALA SER ASP ASN THR LEU ARG LEU SEQRES 37 A 746 GLN PRO ARG THR SER PHE GLU ILE TRP LYS VAL GLU MET SEQRES 38 A 746 THR GLY ILE ALA THR LYS TRP SER HIS GLY ASP VAL PHE SEQRES 39 A 746 ALA ALA ASN ASP LEU ARG ARG SER ALA LEU GLU ASN ASP SEQRES 40 A 746 LEU ALA ARG GLN VAL SER LYS GLU GLN GLN ALA VAL ARG SEQRES 41 A 746 ALA ARG ASP GLU LEU VAL ALA VAL VAL SER HIS ASP LEU SEQRES 42 A 746 ARG ASN PRO MET THR VAL ILE SER MET LEU CYS GLY MET SEQRES 43 A 746 MET GLN LYS SER PHE SER SER ASP GLY PRO HIS THR SER SEQRES 44 A 746 ARG ARG ILE SER THR ALA ILE ASP THR MET GLN GLN ALA SEQRES 45 A 746 ALA SER ARG MET ASN VAL LEU LEU GLU ASP LEU LEU ASP SEQRES 46 A 746 THR SER LYS ILE GLU ALA GLY ARG TYR THR ILE THR PRO SEQRES 47 A 746 GLN PRO LEU GLU VAL SER GLN ILE PHE GLU GLU ALA TYR SEQRES 48 A 746 THR LEU LEU ALA PRO LEU ALA MET ASP LYS SER ILE GLU SEQRES 49 A 746 ILE SER PHE ASN ALA GLU PRO ASP ILE LYS VAL ASN ALA SEQRES 50 A 746 ASP PRO GLU ARG LEU PHE GLN VAL LEU SER ASN LEU ILE SEQRES 51 A 746 GLY ASN ALA ILE LYS PHE THR PRO LYS LEU GLY ARG ILE SEQRES 52 A 746 GLY VAL ALA ALA MET SER ASN GLY ASP GLU VAL VAL PHE SEQRES 53 A 746 THR VAL ARG ASP SER GLY GLU GLY ILE PRO PRO GLU GLN SEQRES 54 A 746 LEU PRO HIS ILE PHE GLU ARG TYR TRP THR VAL LYS GLU SEQRES 55 A 746 GLY ASN PRO THR GLY THR GLY LEU GLY LEU TYR ILE SER SEQRES 56 A 746 GLN GLY ILE ILE LYS ALA HIS GLY GLY GLU LEU ALA ALA SEQRES 57 A 746 GLN SER GLN VAL GLY HIS GLY SER GLU PHE ARG PHE THR SEQRES 58 A 746 VAL PRO ILE ALA HIS SEQRES 1 B 746 GLY MET SER GLN LEU ASP LYS ASP ALA PHE GLU VAL LEU SEQRES 2 B 746 LEU ALA ASN CYS ALA ASP GLU PRO ILE GLN PHE PRO GLY SEQRES 3 B 746 ALA ILE GLN PRO HIS GLY LEU LEU PHE THR LEU LYS GLU SEQRES 4 B 746 PRO GLU LEU THR ILE LEU GLN VAL SER ALA ASN VAL GLN SEQRES 5 B 746 SER VAL LEU GLY LYS VAL PRO ASP GLN LEU ALA GLY GLN SEQRES 6 B 746 THR LEU ASP CYS VAL LEU GLY ALA GLY TRP ALA GLU VAL SEQRES 7 B 746 ILE ARG SER THR SER ALA ASN ASP SER LEU VAL ASP VAL SEQRES 8 B 746 PRO ARG LEU LEU MET SER VAL GLU GLY VAL GLU PHE GLU SEQRES 9 B 746 ALA LEU LEU HIS ARG SER GLN GLU ALA LEU VAL LEU GLU SEQRES 10 B 746 LEU GLU ILE GLN ASP LYS ALA ALA GLN ALA ILE SER TYR SEQRES 11 B 746 SER GLU ARG THR GLY ASN MET GLY ARG MET LEU ARG GLN SEQRES 12 B 746 LEU HIS ALA ALA ALA ASP LEU GLN THR LEU TYR GLU VAL SEQRES 13 B 746 SER VAL ARG GLU ILE GLN ARG MET THR GLY TYR ASP ARG SEQRES 14 B 746 VAL LEU ILE TYR ARG PHE GLU GLU GLU GLY HIS GLY GLN SEQRES 15 B 746 VAL ILE ALA GLU ALA SER ALA PRO ALA MET GLU LEU PHE SEQRES 16 B 746 ASN GLY LEU PHE PHE PRO ALA SER ASP ILE PRO GLU GLN SEQRES 17 B 746 ALA ARG GLU LEU TYR ARG ARG ASN TRP LEU ARG ILE ILE SEQRES 18 B 746 PRO ASP ALA ASN TYR THR PRO VAL PRO LEU VAL PRO GLN SEQRES 19 B 746 LEU ARG PRO ASP THR GLN GLN GLN LEU ASP LEU SER PHE SEQRES 20 B 746 SER THR LEU ARG SER VAL SER PRO ILE HIS CYS GLN TYR SEQRES 21 B 746 MET LYS ASN MET GLY VAL LEU SER SER MET SER VAL SER SEQRES 22 B 746 LEU ILE GLN GLY GLY LYS LEU TRP GLY LEU ILE SER CYS SEQRES 23 B 746 GLY HIS ARG THR PRO LEU TYR VAL SER HIS GLU LEU ARG SEQRES 24 B 746 SER ALA CYS GLN ALA ILE GLY GLN VAL LEU SER LEU GLN SEQRES 25 B 746 ILE SER ALA MET GLU ALA LEU GLU VAL SER ARG GLN ARG SEQRES 26 B 746 GLU THR LYS ILE GLN THR LEU GLN GLN LEU HIS GLN MET SEQRES 27 B 746 MET ALA THR SER ASP THR ASP VAL PHE ASP GLY LEU ALA SEQRES 28 B 746 GLN GLN PRO GLN LEU LEU MET ASP LEU VAL GLY ALA THR SEQRES 29 B 746 GLY VAL ALA ILE ILE GLU ASP ARG GLN THR HIS CYS TYR SEQRES 30 B 746 GLY ASN CYS PRO GLU PRO SER ASP ILE ARG ALA LEU HIS SEQRES 31 B 746 THR TRP MET MET ALA GLY GLY GLU PRO VAL TYR ALA SER SEQRES 32 B 746 HIS HIS LEU SER SER VAL TYR PRO PRO GLY GLU ALA TYR SEQRES 33 B 746 GLN THR LEU ALA SER GLY VAL LEU ALA MET SER LEU PRO SEQRES 34 B 746 LYS PRO VAL ASP ASN GLY VAL ILE TRP PHE ARG PRO GLU SEQRES 35 B 746 VAL LYS GLN SER VAL GLN TRP SER GLY ASP PRO ASN LYS SEQRES 36 B 746 PRO LEU ASN LEU ASP ALA SER ASP ASN THR LEU ARG LEU SEQRES 37 B 746 GLN PRO ARG THR SER PHE GLU ILE TRP LYS VAL GLU MET SEQRES 38 B 746 THR GLY ILE ALA THR LYS TRP SER HIS GLY ASP VAL PHE SEQRES 39 B 746 ALA ALA ASN ASP LEU ARG ARG SER ALA LEU GLU ASN ASP SEQRES 40 B 746 LEU ALA ARG GLN VAL SER LYS GLU GLN GLN ALA VAL ARG SEQRES 41 B 746 ALA ARG ASP GLU LEU VAL ALA VAL VAL SER HIS ASP LEU SEQRES 42 B 746 ARG ASN PRO MET THR VAL ILE SER MET LEU CYS GLY MET SEQRES 43 B 746 MET GLN LYS SER PHE SER SER ASP GLY PRO HIS THR SER SEQRES 44 B 746 ARG ARG ILE SER THR ALA ILE ASP THR MET GLN GLN ALA SEQRES 45 B 746 ALA SER ARG MET ASN VAL LEU LEU GLU ASP LEU LEU ASP SEQRES 46 B 746 THR SER LYS ILE GLU ALA GLY ARG TYR THR ILE THR PRO SEQRES 47 B 746 GLN PRO LEU GLU VAL SER GLN ILE PHE GLU GLU ALA TYR SEQRES 48 B 746 THR LEU LEU ALA PRO LEU ALA MET ASP LYS SER ILE GLU SEQRES 49 B 746 ILE SER PHE ASN ALA GLU PRO ASP ILE LYS VAL ASN ALA SEQRES 50 B 746 ASP PRO GLU ARG LEU PHE GLN VAL LEU SER ASN LEU ILE SEQRES 51 B 746 GLY ASN ALA ILE LYS PHE THR PRO LYS LEU GLY ARG ILE SEQRES 52 B 746 GLY VAL ALA ALA MET SER ASN GLY ASP GLU VAL VAL PHE SEQRES 53 B 746 THR VAL ARG ASP SER GLY GLU GLY ILE PRO PRO GLU GLN SEQRES 54 B 746 LEU PRO HIS ILE PHE GLU ARG TYR TRP THR VAL LYS GLU SEQRES 55 B 746 GLY ASN PRO THR GLY THR GLY LEU GLY LEU TYR ILE SER SEQRES 56 B 746 GLN GLY ILE ILE LYS ALA HIS GLY GLY GLU LEU ALA ALA SEQRES 57 B 746 GLN SER GLN VAL GLY HIS GLY SER GLU PHE ARG PHE THR SEQRES 58 B 746 VAL PRO ILE ALA HIS HET LBV A 900 43 HET LBV B 900 43 HETNAM LBV 3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3- HETNAM 2 LBV METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4- HETNAM 3 LBV METHYL-PYRROL-1-IUM -2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3- HETNAM 4 LBV ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2- HETNAM 5 LBV YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3- YL]PROPANOIC HETNAM 6 LBV ACID HETSYN LBV 2(R),3(E)- PHYTOCHROMOBILIN FORMUL 3 LBV 2(C33 H37 N4 O6 1+) HELIX 1 AA1 LEU A 13 ASP A 18 5 6 HELIX 2 AA2 ASN A 49 SER A 52 5 4 HELIX 3 AA3 LEU A 66 GLY A 71 1 6 HELIX 4 AA4 GLY A 71 ALA A 83 1 13 HELIX 5 AA5 ASP A 121 ILE A 127 1 7 HELIX 6 AA6 SER A 128 THR A 133 1 6 HELIX 7 AA7 ASN A 135 ALA A 146 1 12 HELIX 8 AA8 ASP A 148 GLY A 165 1 18 HELIX 9 AA9 PRO A 205 ASN A 215 1 11 HELIX 10 AB1 SER A 253 GLY A 264 1 12 HELIX 11 AB2 SER A 294 THR A 340 1 47 HELIX 12 AB3 ASP A 344 GLN A 351 1 8 HELIX 13 AB4 GLN A 352 GLY A 361 1 10 HELIX 14 AB5 GLU A 381 GLY A 396 1 16 HELIX 15 AB6 HIS A 404 TYR A 409 1 6 HELIX 16 AB7 PRO A 410 ALA A 414 5 5 HELIX 17 AB8 SER A 488 GLN A 516 1 29 HELIX 18 AB9 ALA A 517 ASN A 534 1 18 HELIX 19 AC1 LEU B 13 ASP B 18 5 6 HELIX 20 AC2 ASN B 49 SER B 52 5 4 HELIX 21 AC3 THR B 65 VAL B 69 5 5 HELIX 22 AC4 GLY B 71 ALA B 83 1 13 HELIX 23 AC5 ASP B 121 ILE B 127 1 7 HELIX 24 AC6 SER B 128 THR B 133 1 6 HELIX 25 AC7 ASN B 135 ALA B 146 1 12 HELIX 26 AC8 ASP B 148 GLY B 165 1 18 HELIX 27 AC9 PRO B 200 ILE B 204 5 5 HELIX 28 AD1 PRO B 205 ASN B 215 1 11 HELIX 29 AD2 SER B 253 GLY B 264 1 12 HELIX 30 AD3 SER B 294 THR B 340 1 47 HELIX 31 AD4 ASP B 344 GLN B 351 1 8 HELIX 32 AD5 GLN B 352 GLY B 361 1 10 HELIX 33 AD6 GLU B 381 GLY B 396 1 16 HELIX 34 AD7 HIS B 404 TYR B 409 1 6 HELIX 35 AD8 PRO B 410 ALA B 414 5 5 HELIX 36 AD9 SER B 488 ARG B 533 1 46 SHEET 1 AA1 7 ALA A 26 ILE A 27 0 SHEET 2 AA1 7 VAL A 228 VAL A 231 -1 O VAL A 228 N ILE A 27 SHEET 3 AA1 7 ILE A 43 SER A 47 -1 N VAL A 46 O VAL A 231 SHEET 4 AA1 7 GLY A 31 LEU A 36 -1 N THR A 35 O GLN A 45 SHEET 5 AA1 7 LEU A 113 GLN A 120 -1 O LEU A 113 N LEU A 36 SHEET 6 AA1 7 VAL A 100 ARG A 108 -1 N GLU A 103 O GLU A 118 SHEET 7 AA1 7 LEU A 94 VAL A 97 -1 N MET A 95 O PHE A 102 SHEET 1 AA2 6 PHE A 198 PHE A 199 0 SHEET 2 AA2 6 GLY A 180 ALA A 186 -1 N GLY A 180 O PHE A 199 SHEET 3 AA2 6 ARG A 168 PHE A 174 -1 N ILE A 171 O ILE A 183 SHEET 4 AA2 6 LYS A 278 HIS A 287 -1 O LEU A 282 N TYR A 172 SHEET 5 AA2 6 SER A 267 GLN A 275 -1 N LEU A 273 O GLY A 281 SHEET 6 AA2 6 LEU A 217 ILE A 220 -1 N ILE A 220 O SER A 268 SHEET 1 AA3 5 GLN A 372 GLY A 377 0 SHEET 2 AA3 5 GLY A 364 GLU A 369 -1 N GLU A 369 O GLN A 372 SHEET 3 AA3 5 ASN A 433 ARG A 439 -1 O ILE A 436 N ALA A 366 SHEET 4 AA3 5 GLY A 421 MET A 425 -1 N MET A 425 O VAL A 435 SHEET 5 AA3 5 VAL A 399 SER A 402 -1 N TYR A 400 O ALA A 424 SHEET 1 AA4 2 GLN A 444 SER A 449 0 SHEET 2 AA4 2 ILE A 475 MET A 480 -1 O TRP A 476 N TRP A 448 SHEET 1 AA5 7 ALA B 26 ILE B 27 0 SHEET 2 AA5 7 VAL B 228 VAL B 231 -1 O VAL B 228 N ILE B 27 SHEET 3 AA5 7 ILE B 43 SER B 47 -1 N VAL B 46 O VAL B 231 SHEET 4 AA5 7 GLY B 31 LYS B 37 -1 N THR B 35 O GLN B 45 SHEET 5 AA5 7 ALA B 112 ILE B 119 -1 O LEU B 117 N LEU B 32 SHEET 6 AA5 7 VAL B 100 ARG B 108 -1 N GLU B 103 O GLU B 118 SHEET 7 AA5 7 LEU B 94 VAL B 97 -1 N VAL B 97 O VAL B 100 SHEET 1 AA6 6 PHE B 198 PHE B 199 0 SHEET 2 AA6 6 GLY B 180 ALA B 186 -1 N GLY B 180 O PHE B 199 SHEET 3 AA6 6 ARG B 168 PHE B 174 -1 N ILE B 171 O ILE B 183 SHEET 4 AA6 6 LYS B 278 HIS B 287 -1 O LEU B 282 N TYR B 172 SHEET 5 AA6 6 SER B 267 GLN B 275 -1 N LEU B 273 O GLY B 281 SHEET 6 AA6 6 LEU B 217 ILE B 220 -1 N ILE B 220 O SER B 268 SHEET 1 AA7 5 GLN B 372 GLY B 377 0 SHEET 2 AA7 5 GLY B 364 GLU B 369 -1 N GLU B 369 O GLN B 372 SHEET 3 AA7 5 ASN B 433 ARG B 439 -1 O GLY B 434 N ILE B 368 SHEET 4 AA7 5 GLY B 421 MET B 425 -1 N MET B 425 O VAL B 435 SHEET 5 AA7 5 VAL B 399 SER B 402 -1 N TYR B 400 O ALA B 424 SHEET 1 AA8 2 GLN B 444 SER B 449 0 SHEET 2 AA8 2 ILE B 475 MET B 480 -1 O TRP B 476 N TRP B 448 SSBOND 1 CYS A 375 CYS A 379 1555 1555 2.03 SSBOND 2 CYS B 375 CYS B 379 1555 1555 2.03 LINK SG CYS A 16 CBA LBV A 900 1555 1555 1.70 LINK SG CYS B 16 CBA LBV B 900 1555 1555 1.70 CISPEP 1 VAL A 231 PRO A 232 0 -4.11 CISPEP 2 VAL B 231 PRO B 232 0 -2.89 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000