HEADER LIPID TRANSPORT 18-SEP-23 8U93 TITLE CRYSTAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE (NANA) FROM KLEBSIELLA TITLE 2 AEROGENES (PEG BOUND) COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLNEURAMINATE LYASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA AEROGENES KCTC 2190; SOURCE 3 ORGANISM_TAXID: 1028307; SOURCE 4 GENE: NANA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: KLAEA.01563.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, N-ACETYLNEURAMINATE LYASE, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 29-NOV-23 8U93 1 REMARK REVDAT 1 27-SEP-23 8U93 0 JRNL AUTH S.LOVELL,L.LIU,S.SEIBOLD,K.P.BATTAILE JRNL TITL CRYSTAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE (NANA) FROM JRNL TITL 2 KLEBSIELLA AEROGENES (PEG BOUND) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_5057: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 45146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9400 - 4.7900 1.00 2972 153 0.1711 0.2009 REMARK 3 2 4.7800 - 3.8000 1.00 2764 170 0.1436 0.1554 REMARK 3 3 3.8000 - 3.3200 1.00 2746 132 0.1839 0.1759 REMARK 3 4 3.3200 - 3.0200 1.00 2715 149 0.2151 0.2724 REMARK 3 5 3.0200 - 2.8000 1.00 2687 163 0.1990 0.2036 REMARK 3 6 2.8000 - 2.6300 1.00 2670 157 0.1952 0.2351 REMARK 3 7 2.6300 - 2.5000 1.00 2643 161 0.1937 0.2203 REMARK 3 8 2.5000 - 2.3900 0.99 2642 143 0.1982 0.2070 REMARK 3 9 2.3900 - 2.3000 0.99 2654 129 0.1851 0.2109 REMARK 3 10 2.3000 - 2.2200 0.99 2661 132 0.1877 0.2123 REMARK 3 11 2.2200 - 2.1500 0.99 2636 140 0.1901 0.2349 REMARK 3 12 2.1500 - 2.0900 0.99 2601 135 0.1973 0.1897 REMARK 3 13 2.0900 - 2.0400 0.99 2626 145 0.2067 0.2553 REMARK 3 14 2.0400 - 1.9900 0.99 2611 136 0.2378 0.2406 REMARK 3 15 1.9900 - 1.9400 0.99 2607 125 0.2708 0.3059 REMARK 3 16 1.9400 - 1.9000 0.99 2623 118 0.3226 0.3858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2390 REMARK 3 ANGLE : 1.093 3224 REMARK 3 CHIRALITY : 0.055 364 REMARK 3 PLANARITY : 0.011 416 REMARK 3 DIHEDRAL : 15.808 886 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1139 2.2641 26.4972 REMARK 3 T TENSOR REMARK 3 T11: 0.4649 T22: 0.3009 REMARK 3 T33: 0.3416 T12: -0.0323 REMARK 3 T13: -0.0631 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.8705 L22: 2.3796 REMARK 3 L33: 2.1579 L12: -1.1212 REMARK 3 L13: -0.1352 L23: -0.6887 REMARK 3 S TENSOR REMARK 3 S11: -0.0563 S12: -0.1861 S13: 0.1113 REMARK 3 S21: 0.3620 S22: -0.0040 S23: -0.0201 REMARK 3 S31: -0.1376 S32: 0.2049 S33: 0.0730 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0647 8.3511 10.1603 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 0.4250 REMARK 3 T33: 0.3986 T12: -0.0506 REMARK 3 T13: -0.0263 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 0.9316 L22: 2.4513 REMARK 3 L33: 4.5185 L12: -1.2096 REMARK 3 L13: -1.4802 L23: 1.9115 REMARK 3 S TENSOR REMARK 3 S11: 0.1313 S12: 0.2319 S13: 0.0802 REMARK 3 S21: 0.0963 S22: -0.1974 S23: 0.0903 REMARK 3 S31: -0.2714 S32: -0.3334 S33: 0.0642 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3287 -14.5843 14.9864 REMARK 3 T TENSOR REMARK 3 T11: 0.4254 T22: 0.3658 REMARK 3 T33: 0.3770 T12: 0.0749 REMARK 3 T13: -0.0500 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 1.8892 L22: 1.5540 REMARK 3 L33: 2.6486 L12: 0.3492 REMARK 3 L13: -1.1971 L23: -1.0022 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.0799 S13: -0.2254 REMARK 3 S21: -0.0314 S22: -0.1425 S23: -0.1298 REMARK 3 S31: 0.3515 S32: 0.4362 S33: 0.2291 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8U93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45341 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 39.60 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 41.50 REMARK 200 R MERGE FOR SHELL (I) : 3.27600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INDEX E8: 35% V/V PENTAERYTHRITOL REMARK 280 PROPOXYLATE (5/4 PO/OH), 0.05 M HEPES PH 7.5, 0.2 M POTASSIUM REMARK 280 CHLORIDE. KLAEA.01563.A.B1.PW39186 AT 18.6 MG/ML. 2MM PYRUVATE REMARK 280 ADDED TO THE PROTEIN PRIOR TO CRYSTALLIZATION. PLATE 13192, WELL REMARK 280 E8 DROP 2. PUCK: PSL-1406, CRYO: DIRECT, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.32133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.66067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 137.32133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.66067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 137.32133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 68.66067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 137.32133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.66067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -96.40600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -96.40600 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 510 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 20 4.70 83.91 REMARK 500 TYR A 110 -62.50 73.22 REMARK 500 ILE A 139 103.66 6.51 REMARK 500 MET A 213 45.97 -156.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 1PG A 307 O3 REMARK 620 2 1PG A 307 O4 63.9 REMARK 620 3 1PG A 307 O5 107.1 70.0 REMARK 620 4 1PG A 307 O2 63.5 126.9 133.9 REMARK 620 5 1PG A 307 O1 120.0 158.0 88.8 64.4 REMARK 620 6 HOH A 520 O 175.1 116.2 77.1 115.5 61.9 REMARK 620 7 HOH A 543 O 131.8 92.9 102.5 117.0 97.5 43.8 REMARK 620 N 1 2 3 4 5 6 DBREF1 8U93 A 1 297 UNP A0A0H3FJT8_KLEAK DBREF2 8U93 A A0A0H3FJT8 1 297 SEQADV 8U93 MET A -7 UNP A0A0H3FJT INITIATING METHIONINE SEQADV 8U93 ALA A -6 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U93 HIS A -5 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U93 HIS A -4 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U93 HIS A -3 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U93 HIS A -2 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U93 HIS A -1 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U93 HIS A 0 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8U93 ALA A 93 UNP A0A0H3FJT VAL 93 ENGINEERED MUTATION SEQRES 1 A 305 MET ALA HIS HIS HIS HIS HIS HIS MET VAL SER HIS LEU SEQRES 2 A 305 ARG GLY VAL MET PRO ALA LEU LEU THR PRO PHE ASP ALA SEQRES 3 A 305 GLN GLN ASN ILE ASP ARG ALA SER LEU ARG ARG LEU VAL SEQRES 4 A 305 ARG PHE ASN ILE GLU GLN GLY VAL ASP GLY VAL TYR VAL SEQRES 5 A 305 GLY GLY SER THR GLY GLU ALA PHE VAL GLN SER LEU SER SEQRES 6 A 305 GLU ARG GLU GLU VAL LEU GLU ILE VAL ALA GLU GLU ALA SEQRES 7 A 305 LYS GLY LYS ILE THR LEU ILE ALA HIS VAL GLY CYS VAL SEQRES 8 A 305 SER THR ALA GLU SER GLN GLN LEU ALA ALA ALA ALA LYS SEQRES 9 A 305 ARG TYR GLY PHE ASP ALA VAL SER ALA VAL THR PRO PHE SEQRES 10 A 305 TYR TYR PRO PHE SER PHE GLU GLU HIS CYS ASP HIS TYR SEQRES 11 A 305 ARG ALA ILE ILE ASP SER ALA ASP GLY ILE PRO MET VAL SEQRES 12 A 305 VAL TYR ASN ILE PRO ALA LEU SER GLY VAL LYS LEU THR SEQRES 13 A 305 LEU GLU GLN ILE ASN GLN LEU VAL THR LEU PRO GLY VAL SEQRES 14 A 305 GLY ALA LEU KPI GLN THR SER GLY ASP LEU TYR GLN MET SEQRES 15 A 305 GLU GLN ILE ARG ARG ALA HIS PRO GLU LEU VAL LEU TYR SEQRES 16 A 305 ASN GLY TYR ASP GLU ILE PHE ALA SER GLY LEU LEU ALA SEQRES 17 A 305 GLY ALA ASP GLY GLY ILE GLY SER THR TYR ASN ILE MET SEQRES 18 A 305 ALA TRP ARG TYR LEU GLY ILE VAL GLN ALA LEU LYS GLU SEQRES 19 A 305 GLY ASP THR ALA LYS ALA GLN GLN LEU GLN HIS GLU CYS SEQRES 20 A 305 ASN LYS VAL ILE ASP LEU LEU VAL LYS VAL GLY VAL PHE SEQRES 21 A 305 ARG GLY LEU LYS THR VAL LEU HIS TYR MET ASP VAL LEU SEQRES 22 A 305 SER VAL PRO LEU CYS ARG LYS PRO PHE ALA PRO VAL GLU SEQRES 23 A 305 ASP LYS PHE GLN ALA GLU LEU LYS ALA LEU ALA GLN GLN SEQRES 24 A 305 LEU MET GLN GLU ARG GLY MODRES 8U93 KPI A 165 LYS MODIFIED RESIDUE HET KPI A 165 14 HET CL A 301 1 HET CL A 302 1 HET K A 303 1 HET DTT A 304 8 HET PEG A 305 7 HET 1PG A 306 17 HET 1PG A 307 17 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)- HETNAM 2 1PG ETHANOL HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 1 KPI C9 H16 N2 O4 FORMUL 2 CL 2(CL 1-) FORMUL 4 K K 1+ FORMUL 5 DTT C4 H10 O2 S2 FORMUL 6 PEG C4 H10 O3 FORMUL 7 1PG 2(C11 H24 O6) FORMUL 9 HOH *151(H2 O) HELIX 1 AA1 VAL A 2 ARG A 6 5 5 HELIX 2 AA2 ASP A 23 GLN A 37 1 15 HELIX 3 AA3 GLY A 46 GLN A 54 5 9 HELIX 4 AA4 SER A 55 LYS A 71 1 17 HELIX 5 AA5 SER A 84 GLY A 99 1 16 HELIX 6 AA6 SER A 114 ASP A 130 1 17 HELIX 7 AA7 THR A 148 THR A 157 1 10 HELIX 8 AA8 ASP A 170 HIS A 181 1 12 HELIX 9 AA9 TYR A 190 GLU A 192 5 3 HELIX 10 AB1 ILE A 193 ALA A 200 1 8 HELIX 11 AB2 THR A 209 GLY A 227 1 19 HELIX 12 AB3 ASP A 228 GLY A 250 1 23 HELIX 13 AB4 GLY A 250 MET A 262 1 13 HELIX 14 AB5 GLU A 278 LYS A 280 5 3 HELIX 15 AB6 PHE A 281 ARG A 296 1 16 SHEET 1 AA1 8 VAL A 8 PRO A 10 0 SHEET 2 AA1 8 GLY A 204 GLY A 207 1 O GLY A 205 N MET A 9 SHEET 3 AA1 8 VAL A 185 ASN A 188 1 N ASN A 188 O GLY A 204 SHEET 4 AA1 8 VAL A 161 GLN A 166 1 N LEU A 164 O TYR A 187 SHEET 5 AA1 8 MET A 134 TYR A 137 1 N VAL A 136 O KPI A 165 SHEET 6 AA1 8 ALA A 102 ALA A 105 1 N VAL A 103 O VAL A 135 SHEET 7 AA1 8 THR A 75 HIS A 79 1 N ALA A 78 O ALA A 102 SHEET 8 AA1 8 GLY A 41 VAL A 44 1 N VAL A 44 O HIS A 79 LINK C LEU A 164 N KPI A 165 1555 1555 1.34 LINK C KPI A 165 N GLN A 166 1555 1555 1.33 LINK K K A 303 O3 1PG A 307 1555 1555 2.90 LINK K K A 303 O4 1PG A 307 1555 1555 2.79 LINK K K A 303 O5 1PG A 307 1555 1555 2.61 LINK K K A 303 O2 1PG A 307 1555 1555 3.47 LINK K K A 303 O1 1PG A 307 1555 1555 3.10 LINK K K A 303 O HOH A 520 1555 1555 2.95 LINK K K A 303 O HOH A 543 1555 1555 3.05 CISPEP 1 LYS A 272 PRO A 273 0 12.77 CRYST1 96.406 96.406 205.982 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010373 0.005989 0.000000 0.00000 SCALE2 0.000000 0.011977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004855 0.00000