HEADER LIGASE 18-SEP-23 8U99 TITLE CRYSTAL STRUCTURE OF CYSTATHIONINE BETA LYASE FROM KLEBSIELLA TITLE 2 AEROGENES (PLP-SERINE ADDUCT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATHIONINE BETA-LYASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.4.1.8; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA AEROGENES KCTC 2190; SOURCE 3 ORGANISM_TAXID: 1028307; SOURCE 4 GENE: EAE_03480; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: KLAEA.00906.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 27-SEP-23 8U99 0 JRNL AUTH L.LIU,S.LOVELL,K.P.BATTAILE,A.COOPER JRNL TITL CRYSTAL STRUCTURE OF CYSTATHIONINE BETA LYASE FROM JRNL TITL 2 KLEBSIELLA AEROGENES (PLP-SERINE ADDUCT) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_5057: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 81612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 4044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0600 - 5.5300 0.98 2765 134 0.1573 0.1992 REMARK 3 2 5.5300 - 4.3900 0.99 2747 150 0.1215 0.1351 REMARK 3 3 4.3900 - 3.8300 0.99 2727 158 0.1235 0.1636 REMARK 3 4 3.8300 - 3.4800 0.98 2715 131 0.1374 0.1608 REMARK 3 5 3.4800 - 3.2300 0.98 2697 131 0.1510 0.1945 REMARK 3 6 3.2300 - 3.0400 0.98 2692 123 0.1524 0.2103 REMARK 3 7 3.0400 - 2.8900 0.98 2718 148 0.1569 0.2122 REMARK 3 8 2.8900 - 2.7600 0.98 2716 139 0.1557 0.2208 REMARK 3 9 2.7600 - 2.6600 0.98 2689 124 0.1568 0.2054 REMARK 3 10 2.6600 - 2.5700 0.98 2696 150 0.1560 0.1964 REMARK 3 11 2.5700 - 2.4900 0.98 2644 156 0.1546 0.2033 REMARK 3 12 2.4900 - 2.4200 0.98 2700 125 0.1580 0.1924 REMARK 3 13 2.4200 - 2.3500 0.98 2687 147 0.1570 0.2189 REMARK 3 14 2.3500 - 2.2900 0.98 2675 126 0.1695 0.2112 REMARK 3 15 2.2900 - 2.2400 0.97 2681 125 0.1727 0.2201 REMARK 3 16 2.2400 - 2.1900 0.97 2657 149 0.1801 0.2235 REMARK 3 17 2.1900 - 2.1500 0.97 2678 166 0.1857 0.2615 REMARK 3 18 2.1500 - 2.1100 0.98 2658 143 0.1993 0.2168 REMARK 3 19 2.1100 - 2.0700 0.97 2630 152 0.2022 0.2569 REMARK 3 20 2.0700 - 2.0400 0.97 2654 153 0.2049 0.2547 REMARK 3 21 2.0400 - 2.0000 0.97 2671 120 0.2086 0.2426 REMARK 3 22 2.0000 - 1.9700 0.97 2621 120 0.2110 0.2536 REMARK 3 23 1.9700 - 1.9400 0.97 2701 143 0.2246 0.2638 REMARK 3 24 1.9400 - 1.9200 0.96 2631 136 0.2286 0.3012 REMARK 3 25 1.9200 - 1.8900 0.97 2618 142 0.2378 0.2801 REMARK 3 26 1.8900 - 1.8700 0.96 2612 145 0.2585 0.2884 REMARK 3 27 1.8700 - 1.8400 0.96 2635 131 0.2722 0.3211 REMARK 3 28 1.8400 - 1.8200 0.96 2677 134 0.2784 0.3170 REMARK 3 29 1.8200 - 1.8000 0.97 2576 143 0.2791 0.3326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6345 REMARK 3 ANGLE : 0.991 8636 REMARK 3 CHIRALITY : 0.055 970 REMARK 3 PLANARITY : 0.010 1124 REMARK 3 DIHEDRAL : 13.688 2270 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8926 -9.4606 -4.5835 REMARK 3 T TENSOR REMARK 3 T11: 0.1262 T22: 0.1317 REMARK 3 T33: 0.1223 T12: -0.0061 REMARK 3 T13: 0.0182 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.0320 L22: 0.0049 REMARK 3 L33: 0.0095 L12: 0.0020 REMARK 3 L13: 0.0177 L23: 0.0022 REMARK 3 S TENSOR REMARK 3 S11: 0.0974 S12: -0.0293 S13: -0.0130 REMARK 3 S21: -0.0043 S22: -0.0459 S23: 0.0487 REMARK 3 S31: 0.0484 S32: -0.0924 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8557 8.6739 12.0197 REMARK 3 T TENSOR REMARK 3 T11: 0.1463 T22: 0.1227 REMARK 3 T33: 0.1427 T12: 0.0298 REMARK 3 T13: 0.0366 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 0.1369 L22: 0.0060 REMARK 3 L33: 0.0759 L12: 0.0230 REMARK 3 L13: 0.1011 L23: 0.0168 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: -0.1766 S13: 0.1315 REMARK 3 S21: 0.0454 S22: -0.0147 S23: 0.0117 REMARK 3 S31: -0.0766 S32: -0.0989 S33: -0.0755 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4276 -6.2107 27.3377 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.3177 REMARK 3 T33: 0.0396 T12: -0.0593 REMARK 3 T13: 0.0618 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.0045 L22: 0.0013 REMARK 3 L33: 0.0170 L12: -0.0003 REMARK 3 L13: -0.0150 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.2269 S13: -0.0213 REMARK 3 S21: 0.0165 S22: 0.0239 S23: -0.0060 REMARK 3 S31: 0.0300 S32: -0.0227 S33: 0.0344 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5041 -3.5987 30.0946 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.2313 REMARK 3 T33: 0.0969 T12: -0.0378 REMARK 3 T13: 0.0262 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.0702 L22: 0.0244 REMARK 3 L33: 0.0094 L12: -0.0399 REMARK 3 L13: 0.0238 L23: -0.0105 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.2006 S13: 0.0264 REMARK 3 S21: 0.0031 S22: 0.0179 S23: -0.0658 REMARK 3 S31: -0.0010 S32: 0.0000 S33: -0.0105 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.9401 -1.2443 17.3588 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1549 REMARK 3 T33: 0.1934 T12: 0.0343 REMARK 3 T13: 0.0111 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: 5.0569 REMARK 3 L13: -4.8214 L23: -4.6978 REMARK 3 S TENSOR REMARK 3 S11: -0.4761 S12: -0.2980 S13: -1.1030 REMARK 3 S21: 0.3687 S22: -0.2977 S23: 0.1264 REMARK 3 S31: 1.0750 S32: -1.3711 S33: 0.7741 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.7747 -37.9356 9.3460 REMARK 3 T TENSOR REMARK 3 T11: 0.3657 T22: 0.0472 REMARK 3 T33: 0.3799 T12: -0.0524 REMARK 3 T13: -0.2123 T23: 0.0815 REMARK 3 L TENSOR REMARK 3 L11: 0.1169 L22: 0.1897 REMARK 3 L33: 0.3013 L12: -0.0149 REMARK 3 L13: 0.0060 L23: -0.0614 REMARK 3 S TENSOR REMARK 3 S11: 0.2370 S12: -0.0288 S13: -0.2596 REMARK 3 S21: -0.0422 S22: 0.0577 S23: 0.1063 REMARK 3 S31: 0.2944 S32: -0.0634 S33: 0.6171 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3427 -50.0487 20.8661 REMARK 3 T TENSOR REMARK 3 T11: 0.4615 T22: 0.2015 REMARK 3 T33: 0.4495 T12: -0.2288 REMARK 3 T13: -0.2307 T23: 0.3386 REMARK 3 L TENSOR REMARK 3 L11: -0.0004 L22: 0.0050 REMARK 3 L33: -0.0003 L12: -0.0004 REMARK 3 L13: -0.0012 L23: -0.0001 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: -0.0334 S13: -0.0513 REMARK 3 S21: 0.0161 S22: 0.0056 S23: -0.0006 REMARK 3 S31: 0.0493 S32: -0.0240 S33: 0.0431 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 196 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.5875 -39.1157 12.0978 REMARK 3 T TENSOR REMARK 3 T11: 0.2959 T22: 0.0462 REMARK 3 T33: 0.2843 T12: -0.0798 REMARK 3 T13: -0.1703 T23: 0.0985 REMARK 3 L TENSOR REMARK 3 L11: 0.0962 L22: 0.0243 REMARK 3 L33: 0.1127 L12: 0.0186 REMARK 3 L13: -0.0789 L23: -0.0475 REMARK 3 S TENSOR REMARK 3 S11: 0.1336 S12: -0.0581 S13: -0.0597 REMARK 3 S21: 0.0309 S22: 0.0219 S23: -0.0031 REMARK 3 S31: 0.0537 S32: -0.0065 S33: 0.1692 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 246 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4375 -31.5869 22.3573 REMARK 3 T TENSOR REMARK 3 T11: 0.2506 T22: 0.3222 REMARK 3 T33: 0.1802 T12: -0.2498 REMARK 3 T13: -0.0568 T23: 0.2311 REMARK 3 L TENSOR REMARK 3 L11: 0.2125 L22: 0.0075 REMARK 3 L33: 0.0618 L12: 0.0154 REMARK 3 L13: -0.1157 L23: -0.0014 REMARK 3 S TENSOR REMARK 3 S11: 0.1234 S12: -0.1197 S13: -0.0666 REMARK 3 S21: 0.0056 S22: 0.0657 S23: 0.0799 REMARK 3 S31: 0.1040 S32: -0.2150 S33: 0.2049 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 310 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4861 -34.3186 11.5299 REMARK 3 T TENSOR REMARK 3 T11: 0.2936 T22: 0.3692 REMARK 3 T33: 0.3398 T12: -0.3520 REMARK 3 T13: -0.0958 T23: 0.2304 REMARK 3 L TENSOR REMARK 3 L11: 0.0392 L22: 0.0021 REMARK 3 L33: 0.0327 L12: 0.0116 REMARK 3 L13: -0.0060 L23: -0.0035 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: -0.1059 S13: -0.0852 REMARK 3 S21: -0.0199 S22: 0.0104 S23: 0.0603 REMARK 3 S31: 0.0658 S32: -0.0937 S33: 0.1147 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 402 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0417 -36.8963 7.3392 REMARK 3 T TENSOR REMARK 3 T11: 0.4599 T22: 0.2784 REMARK 3 T33: 0.3420 T12: 0.0234 REMARK 3 T13: -0.0516 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 2.0000 L12: 9.7514 REMARK 3 L13: 2.0000 L23: 2.0000 REMARK 3 S TENSOR REMARK 3 S11: 1.8761 S12: -6.8260 S13: 1.2097 REMARK 3 S21: 3.2029 S22: -0.3257 S23: -0.1619 REMARK 3 S31: -2.3416 S32: 2.9455 S33: -1.5500 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8U99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81645 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 80.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.00100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS B12: 12.5%(V/V) MPD, REMARK 280 12.5%(V/V) PEG 1000, 12.5%(W/V) PEG 3350, 100 MM TRIS/BICINE, PH REMARK 280 8.5, 30 MM NAF, 30 MM NABR AND 30 MM NAI, 2MM PLP AND SERINE REMARK 280 ADDED TO THE PROTEIN PRIOR TO CRYSTALLIZATION, REMARK 280 KLAEA.00906.A.B1.PW39169 AT 41.1 MG/ML. PLATE 13534 WELL B12 REMARK 280 DROP 3, PUCK: PSL-0907, CRYO: DIRECT, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.90700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.58600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.90700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 65.58600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 654 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 684 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 588 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 666 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 670 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 5 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 -73.98 -97.18 REMARK 500 PHE A 55 -57.09 -134.93 REMARK 500 ILE A 159 -57.68 67.43 REMARK 500 THR A 209 -37.21 -39.09 REMARK 500 LYS A 210 -112.30 -83.31 REMARK 500 ILE A 220 140.98 -172.90 REMARK 500 SER A 308 -153.27 -99.06 REMARK 500 SER A 339 -175.63 70.69 REMARK 500 TRP A 340 -178.31 178.87 REMARK 500 SER B 32 -71.70 -97.59 REMARK 500 PHE B 55 -52.32 -135.44 REMARK 500 ASP B 139 -8.28 -60.00 REMARK 500 THR B 148 98.13 -59.26 REMARK 500 ILE B 159 -48.39 71.37 REMARK 500 LYS B 210 -109.85 -88.20 REMARK 500 ILE B 220 141.20 -173.26 REMARK 500 SER B 339 -178.11 69.16 REMARK 500 TRP B 340 -178.10 -179.25 REMARK 500 ARG B 359 78.62 -117.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 861 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 862 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 863 DISTANCE = 6.27 ANGSTROMS DBREF1 8U99 A 1 395 UNP A0A0H3FMF8_KLEAK DBREF2 8U99 A A0A0H3FMF8 1 395 DBREF1 8U99 B 1 395 UNP A0A0H3FMF8_KLEAK DBREF2 8U99 B A0A0H3FMF8 1 395 SEQADV 8U99 MET A -7 UNP A0A0H3FMF INITIATING METHIONINE SEQADV 8U99 ALA A -6 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS A -5 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS A -4 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS A -3 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS A -2 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS A -1 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS A 0 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 ILE A 244 UNP A0A0H3FMF VAL 244 ENGINEERED MUTATION SEQADV 8U99 PRO A 360 UNP A0A0H3FMF LEU 360 ENGINEERED MUTATION SEQADV 8U99 MET B -7 UNP A0A0H3FMF INITIATING METHIONINE SEQADV 8U99 ALA B -6 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS B -5 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS B -4 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS B -3 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS B -2 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS B -1 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 HIS B 0 UNP A0A0H3FMF EXPRESSION TAG SEQADV 8U99 ILE B 244 UNP A0A0H3FMF VAL 244 ENGINEERED MUTATION SEQADV 8U99 PRO B 360 UNP A0A0H3FMF LEU 360 ENGINEERED MUTATION SEQRES 1 A 403 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ASP LYS HIS SEQRES 2 A 403 LEU ASP THR ALA LEU VAL ASN ALA GLY ARG ARG LYS LYS SEQRES 3 A 403 TYR THR GLN GLY SER VAL ASN SER VAL ILE GLN ARG ALA SEQRES 4 A 403 SER SER LEU VAL PHE ASP THR VAL GLU ALA LYS LYS HIS SEQRES 5 A 403 ALA THR ARG ASN ARG ALA LYS GLY GLU LEU PHE TYR GLY SEQRES 6 A 403 ARG ARG GLY THR LEU THR HIS PHE SER LEU GLN GLU ALA SEQRES 7 A 403 MET CYS GLU LEU GLU GLY GLY ALA GLY CYS ALA LEU PHE SEQRES 8 A 403 PRO CYS GLY ALA ALA ALA VAL ALA ASN THR ILE LEU ALA SEQRES 9 A 403 PHE VAL GLU GLN GLY ASP HIS VAL LEU MET THR ASN THR SEQRES 10 A 403 ALA TYR GLU PRO SER GLN ASP PHE CYS THR LYS ILE LEU SEQRES 11 A 403 ALA LYS LEU GLY VAL THR THR GLY TRP PHE ASP PRO LEU SEQRES 12 A 403 ILE GLY ALA ASP ILE ALA ASN LEU ILE GLN PRO ASN THR SEQRES 13 A 403 LYS VAL VAL PHE LEU GLU SER PRO GLY SER ILE THR MET SEQRES 14 A 403 GLU VAL HIS ASP VAL PRO ALA ILE VAL ALA ALA VAL ARG SEQRES 15 A 403 ARG VAL ALA PRO GLU ALA ILE ILE MET ILE ASP ASN THR SEQRES 16 A 403 TRP ALA ALA GLY VAL LEU PHE LYS ALA LEU ASP PHE GLY SEQRES 17 A 403 ILE ASP ILE SER ILE GLN ALA ALA THR LYS TYR LEU ILE SEQRES 18 A 403 GLY HIS SER ASP GLY MET ILE GLY THR ALA VAL ALA ASN SEQRES 19 A 403 ALA ARG CYS TRP GLU GLN LEU CYS GLU ASN ALA TYR LEU SEQRES 20 A 403 MET GLY GLN MET ILE ASP ALA ASP THR ALA TYR MET THR SEQRES 21 A 403 SER ARG GLY LEU ARG THR LEU GLY VAL ARG LEU ARG GLN SEQRES 22 A 403 HIS HIS GLU SER SER LEU ARG VAL ALA GLU TRP LEU ALA SEQRES 23 A 403 GLN HIS PRO GLN VAL ALA ARG VAL ASN HIS PRO ALA LEU SEQRES 24 A 403 PRO GLY SER LYS GLY HIS GLU PHE TRP LYS ARG ASP PHE SEQRES 25 A 403 SER GLY SER SER GLY LEU PHE SER PHE VAL LEU ASN LYS SEQRES 26 A 403 ARG LEU THR ASP ALA GLU LEU ALA ALA TYR LEU ASP ASN SEQRES 27 A 403 PHE SER LEU PHE SER MET ALA TYR SER TRP GLY GLY PHE SEQRES 28 A 403 GLU SER LEU ILE LEU ALA ASN GLN PRO GLU HIS ILE ALA SEQRES 29 A 403 ALA ILE ARG PRO GLU ALA GLU VAL ASP PHE SER GLY THR SEQRES 30 A 403 LEU ILE ARG LEU HIS ILE GLY LEU GLU ASN VAL ASP ASP SEQRES 31 A 403 LEU LEU ALA ASP LEU ALA ALA GLY PHE ALA ARG ILE VAL SEQRES 1 B 403 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ASP LYS HIS SEQRES 2 B 403 LEU ASP THR ALA LEU VAL ASN ALA GLY ARG ARG LYS LYS SEQRES 3 B 403 TYR THR GLN GLY SER VAL ASN SER VAL ILE GLN ARG ALA SEQRES 4 B 403 SER SER LEU VAL PHE ASP THR VAL GLU ALA LYS LYS HIS SEQRES 5 B 403 ALA THR ARG ASN ARG ALA LYS GLY GLU LEU PHE TYR GLY SEQRES 6 B 403 ARG ARG GLY THR LEU THR HIS PHE SER LEU GLN GLU ALA SEQRES 7 B 403 MET CYS GLU LEU GLU GLY GLY ALA GLY CYS ALA LEU PHE SEQRES 8 B 403 PRO CYS GLY ALA ALA ALA VAL ALA ASN THR ILE LEU ALA SEQRES 9 B 403 PHE VAL GLU GLN GLY ASP HIS VAL LEU MET THR ASN THR SEQRES 10 B 403 ALA TYR GLU PRO SER GLN ASP PHE CYS THR LYS ILE LEU SEQRES 11 B 403 ALA LYS LEU GLY VAL THR THR GLY TRP PHE ASP PRO LEU SEQRES 12 B 403 ILE GLY ALA ASP ILE ALA ASN LEU ILE GLN PRO ASN THR SEQRES 13 B 403 LYS VAL VAL PHE LEU GLU SER PRO GLY SER ILE THR MET SEQRES 14 B 403 GLU VAL HIS ASP VAL PRO ALA ILE VAL ALA ALA VAL ARG SEQRES 15 B 403 ARG VAL ALA PRO GLU ALA ILE ILE MET ILE ASP ASN THR SEQRES 16 B 403 TRP ALA ALA GLY VAL LEU PHE LYS ALA LEU ASP PHE GLY SEQRES 17 B 403 ILE ASP ILE SER ILE GLN ALA ALA THR LYS TYR LEU ILE SEQRES 18 B 403 GLY HIS SER ASP GLY MET ILE GLY THR ALA VAL ALA ASN SEQRES 19 B 403 ALA ARG CYS TRP GLU GLN LEU CYS GLU ASN ALA TYR LEU SEQRES 20 B 403 MET GLY GLN MET ILE ASP ALA ASP THR ALA TYR MET THR SEQRES 21 B 403 SER ARG GLY LEU ARG THR LEU GLY VAL ARG LEU ARG GLN SEQRES 22 B 403 HIS HIS GLU SER SER LEU ARG VAL ALA GLU TRP LEU ALA SEQRES 23 B 403 GLN HIS PRO GLN VAL ALA ARG VAL ASN HIS PRO ALA LEU SEQRES 24 B 403 PRO GLY SER LYS GLY HIS GLU PHE TRP LYS ARG ASP PHE SEQRES 25 B 403 SER GLY SER SER GLY LEU PHE SER PHE VAL LEU ASN LYS SEQRES 26 B 403 ARG LEU THR ASP ALA GLU LEU ALA ALA TYR LEU ASP ASN SEQRES 27 B 403 PHE SER LEU PHE SER MET ALA TYR SER TRP GLY GLY PHE SEQRES 28 B 403 GLU SER LEU ILE LEU ALA ASN GLN PRO GLU HIS ILE ALA SEQRES 29 B 403 ALA ILE ARG PRO GLU ALA GLU VAL ASP PHE SER GLY THR SEQRES 30 B 403 LEU ILE ARG LEU HIS ILE GLY LEU GLU ASN VAL ASP ASP SEQRES 31 B 403 LEU LEU ALA ASP LEU ALA ALA GLY PHE ALA ARG ILE VAL HET PLP A 401 15 HET SER A 402 7 HET MPD A 403 8 HET CL A 404 1 HET PLP B 401 15 HET SER B 402 7 HET MPD B 403 8 HET CL B 404 1 HET CL B 405 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM SER SERINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CL CHLORIDE ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 SER 2(C3 H7 N O3) FORMUL 5 MPD 2(C6 H14 O2) FORMUL 6 CL 3(CL 1-) FORMUL 12 HOH *583(H2 O) HELIX 1 AA1 HIS A 5 ALA A 13 1 9 HELIX 2 AA2 ARG A 16 GLN A 21 1 6 HELIX 3 AA3 THR A 38 ASN A 48 1 11 HELIX 4 AA4 THR A 61 GLY A 76 1 16 HELIX 5 AA5 CYS A 85 PHE A 97 1 13 HELIX 6 AA6 TYR A 111 ILE A 121 1 11 HELIX 7 AA7 LEU A 122 GLY A 126 5 5 HELIX 8 AA8 ILE A 136 ILE A 144 5 9 HELIX 9 AA9 ASP A 165 ALA A 177 1 13 HELIX 10 AB1 LYS A 195 GLY A 200 5 6 HELIX 11 AB2 ASN A 226 MET A 240 1 15 HELIX 12 AB3 ASP A 245 ARG A 257 1 13 HELIX 13 AB4 THR A 258 GLN A 279 1 22 HELIX 14 AB5 GLY A 296 PHE A 304 1 9 HELIX 15 AB6 THR A 320 ASP A 329 1 10 HELIX 16 AB7 GLN A 351 ALA A 357 1 7 HELIX 17 AB8 ASN A 379 VAL A 395 1 17 HELIX 18 AB9 LEU B 6 ALA B 13 1 8 HELIX 19 AC1 ARG B 16 GLN B 21 1 6 HELIX 20 AC2 THR B 38 ASN B 48 1 11 HELIX 21 AC3 THR B 61 GLY B 76 1 16 HELIX 22 AC4 CYS B 85 PHE B 97 1 13 HELIX 23 AC5 TYR B 111 ILE B 121 1 11 HELIX 24 AC6 LEU B 122 GLY B 126 5 5 HELIX 25 AC7 ILE B 136 LEU B 143 5 8 HELIX 26 AC8 ASP B 165 ALA B 177 1 13 HELIX 27 AC9 LYS B 195 GLY B 200 5 6 HELIX 28 AD1 ASN B 226 MET B 240 1 15 HELIX 29 AD2 ASP B 245 ARG B 257 1 13 HELIX 30 AD3 THR B 258 GLN B 279 1 22 HELIX 31 AD4 GLY B 296 PHE B 304 1 9 HELIX 32 AD5 THR B 320 ASP B 329 1 10 HELIX 33 AD6 GLN B 351 ILE B 358 1 8 HELIX 34 AD7 ASN B 379 ILE B 394 1 16 SHEET 1 AA1 7 GLY A 79 PHE A 83 0 SHEET 2 AA1 7 GLY A 221 ALA A 225 -1 O ALA A 223 N ALA A 81 SHEET 3 AA1 7 ILE A 203 ALA A 207 -1 N SER A 204 O VAL A 224 SHEET 4 AA1 7 ILE A 181 ASP A 185 1 N ILE A 184 O ILE A 205 SHEET 5 AA1 7 THR A 148 GLU A 154 1 N LEU A 153 O MET A 183 SHEET 6 AA1 7 HIS A 103 THR A 107 1 N LEU A 105 O PHE A 152 SHEET 7 AA1 7 THR A 128 PHE A 132 1 O GLY A 130 N VAL A 104 SHEET 1 AA2 4 VAL A 283 ASN A 287 0 SHEET 2 AA2 4 LEU A 310 LEU A 315 -1 O VAL A 314 N ARG A 285 SHEET 3 AA2 4 LEU A 370 HIS A 374 -1 O ILE A 371 N PHE A 313 SHEET 4 AA2 4 LEU A 346 ASN A 350 -1 N ASN A 350 O LEU A 370 SHEET 1 AA3 7 GLY B 79 PHE B 83 0 SHEET 2 AA3 7 GLY B 221 ALA B 225 -1 O ALA B 223 N ALA B 81 SHEET 3 AA3 7 ILE B 203 ALA B 207 -1 N GLN B 206 O THR B 222 SHEET 4 AA3 7 ILE B 181 ASP B 185 1 N ILE B 184 O ILE B 205 SHEET 5 AA3 7 THR B 148 GLU B 154 1 N LEU B 153 O MET B 183 SHEET 6 AA3 7 HIS B 103 THR B 107 1 N LEU B 105 O PHE B 152 SHEET 7 AA3 7 THR B 128 PHE B 132 1 O THR B 128 N VAL B 104 SHEET 1 AA4 4 VAL B 283 ASN B 287 0 SHEET 2 AA4 4 LEU B 310 LEU B 315 -1 O VAL B 314 N ALA B 284 SHEET 3 AA4 4 LEU B 370 HIS B 374 -1 O ILE B 371 N PHE B 313 SHEET 4 AA4 4 LEU B 346 ASN B 350 -1 N LEU B 348 O ARG B 372 LINK C4A PLP A 401 N SER A 402 1555 1555 1.44 LINK C4A PLP B 401 N SER B 402 1555 1555 1.43 CISPEP 1 SER A 155 PRO A 156 0 -9.29 CISPEP 2 SER B 155 PRO B 156 0 -2.05 CRYST1 87.814 131.172 82.672 90.00 103.93 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011388 0.000000 0.002824 0.00000 SCALE2 0.000000 0.007624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012462 0.00000