HEADER SIGNALING PROTEIN 23-SEP-23 8UBH TITLE SOLUTION NMR STRUCTURE OF KAIB VARIANT FROM THERMOSYNECHOCOCCUS TITLE 2 ELONGATUS VESTITUS (KAIBTV-4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIRCADIAN OSCILLATION REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS VESTITUS BP-1; SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: NIES-2133 / IAM M-273 / BP-1; SOURCE 5 GENE: TLL0553; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN FOLDING, METAMORPHIC PROTEIN, FOLD-SWITCHING, SIGNALING KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.OJOAWO,H.K.WAYMENT-STEELE,D.KERN REVDAT 6 15-MAY-24 8UBH 1 REMARK REVDAT 5 07-FEB-24 8UBH 1 JRNL REVDAT 4 20-DEC-23 8UBH 1 JRNL REVDAT 3 29-NOV-23 8UBH 1 REMARK HELIX SHEET ATOM REVDAT 2 08-NOV-23 8UBH 1 HEADER KEYWDS AUTHOR JRNL REVDAT 1 25-OCT-23 8UBH 0 JRNL AUTH H.K.WAYMENT-STEELE,A.OJOAWO,R.OTTEN,J.M.APITZ,W.PITSAWONG, JRNL AUTH 2 M.HOMBERGER,S.OVCHINNIKOV,L.COLWELL,D.KERN JRNL TITL PREDICTING MULTIPLE CONFORMATIONS VIA SEQUENCE CLUSTERING JRNL TITL 2 AND ALPHAFOLD2. JRNL REF NATURE V. 625 832 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 37956700 JRNL DOI 10.1038/S41586-023-06832-9 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1000277756. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 100 MM MOPS, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM TCEP, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC ALIPHATIC; 2D 1H REMARK 210 -13C HSQC AROMATIC; 3D CBCA(CO) REMARK 210 NH; 3D HNCA; 3D HNCACB; 2D 1H- REMARK 210 15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D C(CO)NH; 3D HBHA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY; 2D (HB) REMARK 210 CB(CGCDCE)HDH AROMATIC; 2D (HB) REMARK 210 CB(CGCD)HD AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD; AVANCE NEO; REMARK 210 UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : POKY, PINE SERVER, TOPSPIN, REMARK 210 NMRPIPE, PONDEROSA-C/S, X-PLOR REMARK 210 NIH, AUDANA, TALOS-N REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 65 156.80 -49.26 REMARK 500 1 GLN A 73 86.20 -67.70 REMARK 500 2 GLN A 73 85.89 -69.41 REMARK 500 3 GLN A 54 -62.84 -126.36 REMARK 500 4 TYR A 63 165.75 -48.75 REMARK 500 5 GLU A 11 55.08 -161.80 REMARK 500 5 TYR A 63 155.18 -40.11 REMARK 500 5 GLN A 73 85.19 -68.82 REMARK 500 6 GLU A 11 -31.50 84.17 REMARK 500 6 GLN A 73 91.51 -66.10 REMARK 500 7 LYS A 31 41.52 -93.10 REMARK 500 7 GLN A 73 96.24 -66.98 REMARK 500 9 GLN A 73 89.83 -67.25 REMARK 500 10 GLU A 11 -78.50 -100.54 REMARK 500 10 THR A 12 135.29 53.71 REMARK 500 10 GLN A 54 -40.75 -131.05 REMARK 500 10 LEU A 74 63.31 -103.21 REMARK 500 11 GLN A 73 86.38 -69.93 REMARK 500 12 GLU A 11 40.44 37.57 REMARK 500 12 GLN A 73 86.86 -68.89 REMARK 500 14 TYR A 63 157.10 -47.24 REMARK 500 15 GLU A 11 -78.21 63.77 REMARK 500 15 THR A 12 156.95 49.69 REMARK 500 15 LEU A 74 41.95 -74.08 REMARK 500 16 TYR A 63 164.25 -41.78 REMARK 500 16 GLN A 73 86.43 -69.27 REMARK 500 17 GLN A 73 91.09 -64.71 REMARK 500 17 LEU A 74 48.46 -83.66 REMARK 500 18 GLN A 73 92.88 -65.43 REMARK 500 18 LEU A 74 49.82 -80.30 REMARK 500 20 TYR A 63 160.28 -48.87 REMARK 500 20 GLN A 73 95.39 -60.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31107 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF KAIB VARIANT FROM THERMOSYNECHOCOCCUS REMARK 900 ELONGATUS VESTITUS (KAIBTV-4) DBREF 8UBH A 2 86 UNP Q8DLE2 Q8DLE2_THEVB 183 267 SEQADV 8UBH MET A 1 UNP Q8DLE2 INITIATING METHIONINE SEQRES 1 A 86 MET TYR VAL PHE ARG LEU TYR VAL ARG GLY GLU THR HIS SEQRES 2 A 86 ALA ALA GLU VAL ALA LEU LYS ASN LEU HIS ASP LEU LEU SEQRES 3 A 86 SER SER ALA LEU LYS VAL PRO TYR THR LEU LYS VAL VAL SEQRES 4 A 86 ASP VAL THR LYS GLN PRO ASP LEU ALA GLU LYS ASP GLN SEQRES 5 A 86 VAL GLN ALA THR PRO THR LEU VAL ARG VAL TYR PRO GLN SEQRES 6 A 86 PRO VAL ARG ARG LEU VAL GLY GLN LEU ASP HIS ARG TYR SEQRES 7 A 86 ARG LEU GLN HIS LEU LEU SER PRO HELIX 1 AA1 THR A 12 LEU A 30 1 19 HELIX 2 AA2 GLN A 44 GLN A 52 1 9 HELIX 3 AA3 HIS A 76 SER A 85 1 10 SHEET 1 AA1 4 THR A 35 ASP A 40 0 SHEET 2 AA1 4 VAL A 3 VAL A 8 1 N PHE A 4 O THR A 35 SHEET 3 AA1 4 THR A 58 VAL A 62 -1 O VAL A 60 N ARG A 5 SHEET 4 AA1 4 ARG A 68 VAL A 71 -1 O LEU A 70 N LEU A 59 CISPEP 1 THR A 56 PRO A 57 1 -5.70 CISPEP 2 TYR A 63 PRO A 64 1 0.95 CISPEP 3 GLN A 65 PRO A 66 1 -0.36 CISPEP 4 THR A 56 PRO A 57 2 -5.33 CISPEP 5 TYR A 63 PRO A 64 2 1.80 CISPEP 6 GLN A 65 PRO A 66 2 0.15 CISPEP 7 THR A 56 PRO A 57 3 -3.82 CISPEP 8 TYR A 63 PRO A 64 3 -3.23 CISPEP 9 GLN A 65 PRO A 66 3 1.35 CISPEP 10 THR A 56 PRO A 57 4 -4.25 CISPEP 11 TYR A 63 PRO A 64 4 0.95 CISPEP 12 GLN A 65 PRO A 66 4 0.13 CISPEP 13 THR A 56 PRO A 57 5 -4.61 CISPEP 14 TYR A 63 PRO A 64 5 1.17 CISPEP 15 GLN A 65 PRO A 66 5 0.20 CISPEP 16 THR A 56 PRO A 57 6 -5.19 CISPEP 17 TYR A 63 PRO A 64 6 0.54 CISPEP 18 GLN A 65 PRO A 66 6 0.13 CISPEP 19 THR A 56 PRO A 57 7 -4.86 CISPEP 20 TYR A 63 PRO A 64 7 -3.55 CISPEP 21 GLN A 65 PRO A 66 7 -0.40 CISPEP 22 THR A 56 PRO A 57 8 -4.24 CISPEP 23 TYR A 63 PRO A 64 8 0.98 CISPEP 24 GLN A 65 PRO A 66 8 0.57 CISPEP 25 THR A 56 PRO A 57 9 -5.19 CISPEP 26 TYR A 63 PRO A 64 9 1.30 CISPEP 27 GLN A 65 PRO A 66 9 0.89 CISPEP 28 THR A 56 PRO A 57 10 -6.52 CISPEP 29 TYR A 63 PRO A 64 10 1.93 CISPEP 30 GLN A 65 PRO A 66 10 1.58 CISPEP 31 THR A 56 PRO A 57 11 -5.95 CISPEP 32 TYR A 63 PRO A 64 11 -4.81 CISPEP 33 GLN A 65 PRO A 66 11 -0.57 CISPEP 34 THR A 56 PRO A 57 12 -4.89 CISPEP 35 TYR A 63 PRO A 64 12 -4.93 CISPEP 36 GLN A 65 PRO A 66 12 0.67 CISPEP 37 THR A 56 PRO A 57 13 -2.39 CISPEP 38 TYR A 63 PRO A 64 13 1.40 CISPEP 39 GLN A 65 PRO A 66 13 0.00 CISPEP 40 THR A 56 PRO A 57 14 -3.36 CISPEP 41 TYR A 63 PRO A 64 14 1.54 CISPEP 42 GLN A 65 PRO A 66 14 -0.05 CISPEP 43 THR A 56 PRO A 57 15 -2.58 CISPEP 44 TYR A 63 PRO A 64 15 -3.45 CISPEP 45 GLN A 65 PRO A 66 15 0.09 CISPEP 46 THR A 56 PRO A 57 16 -5.39 CISPEP 47 TYR A 63 PRO A 64 16 1.23 CISPEP 48 GLN A 65 PRO A 66 16 0.75 CISPEP 49 THR A 56 PRO A 57 17 -4.79 CISPEP 50 TYR A 63 PRO A 64 17 1.86 CISPEP 51 GLN A 65 PRO A 66 17 -0.55 CISPEP 52 THR A 56 PRO A 57 18 -5.76 CISPEP 53 TYR A 63 PRO A 64 18 1.16 CISPEP 54 GLN A 65 PRO A 66 18 0.83 CISPEP 55 THR A 56 PRO A 57 19 -2.89 CISPEP 56 TYR A 63 PRO A 64 19 1.55 CISPEP 57 GLN A 65 PRO A 66 19 0.84 CISPEP 58 THR A 56 PRO A 57 20 -5.05 CISPEP 59 TYR A 63 PRO A 64 20 2.11 CISPEP 60 GLN A 65 PRO A 66 20 0.22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1