HEADER VIRAL PROTEIN 04-OCT-23 8UFM TITLE CRYSTAL STRUCTURE OF L516C/Y647C MUTANT OF SARS-UNIQUE DOMAIN (SUD) TITLE 2 FROM SARS-COV-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE NSP3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SARS-UNIQUE DOMAIN (SUD); COMPND 5 SYNONYM: NON-STRUCTURAL PROTEIN 3,NSP3,PL2-PRO,PAPAIN-LIKE COMPND 6 PROTEINASE,PL-PRO; COMPND 7 EC: 3.4.19.12,3.4.22.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, SUD, SARS UNIQUE DOMAIN, CENTER FOR STRUCTURAL KEYWDS 3 BIOLOGY OF INFECTIOUS DISEASES, CSBID, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,L.SHUVALOVA,J.S.BRUNZELLE,M.ROSAS-LEMUS,O.KIRYUKHINA, AUTHOR 2 K.J.F.SATCHELL,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID),CENTER FOR STRUCTURAL BIOLOGY OF INFECTIOUS DISEASES (CSBID) REVDAT 2 15-NOV-23 8UFM 1 REMARK REVDAT 1 18-OCT-23 8UFM 0 JRNL AUTH G.MINASOV,L.SHUVALOVA,J.S.BRUNZELLE,M.ROSAS-LEMUS, JRNL AUTH 2 O.KIRYUKHINA,K.J.F.SATCHELL, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF L516C/Y647C MUTANT OF SARS-UNIQUE JRNL TITL 2 DOMAIN (SUD) FROM SARS-COV-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2743 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1921 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.61000 REMARK 3 B22 (A**2) : 1.61000 REMARK 3 B33 (A**2) : -5.22000 REMARK 3 B12 (A**2) : 0.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2020 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1959 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2751 ; 1.454 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4528 ; 0.343 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 4.168 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;28.193 ;23.590 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 338 ; 8.384 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.442 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2195 ; 0.055 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 399 ; 0.051 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 412 A 492 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2767 44.1856 11.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.0617 REMARK 3 T33: 0.2382 T12: 0.0623 REMARK 3 T13: 0.0519 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.7111 L22: 2.1332 REMARK 3 L33: 2.9069 L12: -0.1440 REMARK 3 L13: 0.4786 L23: 0.7947 REMARK 3 S TENSOR REMARK 3 S11: 0.1760 S12: 0.1135 S13: 0.2167 REMARK 3 S21: -0.2230 S22: -0.1614 S23: -0.0938 REMARK 3 S31: -0.3810 S32: -0.0591 S33: -0.0146 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 493 A 539 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2566 53.1708 16.3641 REMARK 3 T TENSOR REMARK 3 T11: 0.2603 T22: 0.0091 REMARK 3 T33: 0.3414 T12: 0.0211 REMARK 3 T13: 0.0268 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 3.4519 L22: 1.9760 REMARK 3 L33: 3.4433 L12: -0.3628 REMARK 3 L13: 1.8109 L23: 0.0304 REMARK 3 S TENSOR REMARK 3 S11: -0.1155 S12: -0.0115 S13: 0.6637 REMARK 3 S21: 0.0508 S22: -0.1133 S23: -0.1939 REMARK 3 S31: -0.7859 S32: -0.0760 S33: 0.2289 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 540 A 576 REMARK 3 ORIGIN FOR THE GROUP (A): 48.8005 27.3189 36.4903 REMARK 3 T TENSOR REMARK 3 T11: 0.0638 T22: 0.0601 REMARK 3 T33: 0.1717 T12: -0.0274 REMARK 3 T13: -0.0077 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.1337 L22: 0.9560 REMARK 3 L33: 2.7035 L12: 0.6635 REMARK 3 L13: 1.1963 L23: 0.6525 REMARK 3 S TENSOR REMARK 3 S11: 0.1123 S12: -0.1664 S13: 0.0043 REMARK 3 S21: 0.1401 S22: -0.1132 S23: -0.0546 REMARK 3 S31: 0.0209 S32: 0.1581 S33: 0.0009 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 577 A 592 REMARK 3 ORIGIN FOR THE GROUP (A): 55.6502 15.9228 30.7711 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.1449 REMARK 3 T33: 0.1407 T12: 0.0849 REMARK 3 T13: -0.0114 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 3.9555 L22: 7.8925 REMARK 3 L33: 3.5740 L12: 4.1328 REMARK 3 L13: 0.2173 L23: -1.3946 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: -0.0531 S13: -0.4442 REMARK 3 S21: -0.0325 S22: 0.0528 S23: -0.5375 REMARK 3 S31: 0.3086 S32: 0.5695 S33: -0.0150 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 593 A 671 REMARK 3 ORIGIN FOR THE GROUP (A): 47.7911 32.4439 28.0291 REMARK 3 T TENSOR REMARK 3 T11: 0.0168 T22: 0.0270 REMARK 3 T33: 0.1819 T12: -0.0183 REMARK 3 T13: 0.0013 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.8059 L22: 1.3303 REMARK 3 L33: 2.9915 L12: -0.2667 REMARK 3 L13: 0.1157 L23: -0.2273 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: 0.0063 S13: 0.1148 REMARK 3 S21: 0.0241 S22: -0.0664 S23: -0.0040 REMARK 3 S31: -0.1276 S32: 0.1852 S33: 0.0246 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8UFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12704 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40007 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 30.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 6.45 MG/ML, 0.3M SODIUM REMARK 280 CHLORIDE, 0.01M TRIS PH 8.3; SCREEN: AMSO4 (A2), 0.2M AMMONIUM REMARK 280 ACETATE, 2.2M AMMONIUM SULFATE; CRYO: 2.0M LITHIUM SULFATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.55800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.11600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.11600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.55800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 LYS A 487 REMARK 465 ALA A 488 REMARK 465 GLY A 489 REMARK 465 ILE A 541 REMARK 465 ILE A 542 REMARK 465 SER A 543 REMARK 465 ASN A 544 REMARK 465 GLU A 545 REMARK 465 LYS A 546 REMARK 465 GLN A 547 REMARK 465 GLU A 548 REMARK 465 LEU A 672 REMARK 465 THR A 673 REMARK 465 SER A 674 REMARK 465 SER A 675 REMARK 465 SER A 676 REMARK 465 LYS A 677 REMARK 465 THR A 678 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 560 CG - SE - CE ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 588 74.15 -111.39 REMARK 500 VAL A 635 -55.84 73.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSBID-IDP52003.403 RELATED DB: TARGETTRACK DBREF 8UFM A 413 678 UNP P0DTC1 R1A_SARS2 1231 1496 SEQADV 8UFM SER A 410 UNP P0DTC1 EXPRESSION TAG SEQADV 8UFM ASN A 411 UNP P0DTC1 EXPRESSION TAG SEQADV 8UFM ALA A 412 UNP P0DTC1 EXPRESSION TAG SEQADV 8UFM CYS A 516 UNP P0DTC1 LEU 1334 ENGINEERED MUTATION SEQADV 8UFM CYS A 647 UNP P0DTC1 TYR 1465 ENGINEERED MUTATION SEQRES 1 A 269 SER ASN ALA LYS ILE LYS ALA CYS VAL GLU GLU VAL THR SEQRES 2 A 269 THR THR LEU GLU GLU THR LYS PHE LEU THR GLU ASN LEU SEQRES 3 A 269 LEU LEU TYR ILE ASP ILE ASN GLY ASN LEU HIS PRO ASP SEQRES 4 A 269 SER ALA THR LEU VAL SER ASP ILE ASP ILE THR PHE LEU SEQRES 5 A 269 LYS LYS ASP ALA PRO TYR ILE VAL GLY ASP VAL VAL GLN SEQRES 6 A 269 GLU GLY VAL LEU THR ALA VAL VAL ILE PRO THR LYS LYS SEQRES 7 A 269 ALA GLY GLY THR THR GLU MSE LEU ALA LYS ALA LEU ARG SEQRES 8 A 269 LYS VAL PRO THR ASP ASN TYR ILE THR THR TYR PRO GLY SEQRES 9 A 269 GLN GLY CYS ASN GLY TYR THR VAL GLU GLU ALA LYS THR SEQRES 10 A 269 VAL LEU LYS LYS CYS LYS SER ALA PHE TYR ILE LEU PRO SEQRES 11 A 269 SER ILE ILE SER ASN GLU LYS GLN GLU ILE LEU GLY THR SEQRES 12 A 269 VAL SER TRP ASN LEU ARG GLU MSE LEU ALA HIS ALA GLU SEQRES 13 A 269 GLU THR ARG LYS LEU MSE PRO VAL CYS VAL GLU THR LYS SEQRES 14 A 269 ALA ILE VAL SER THR ILE GLN ARG LYS TYR LYS GLY ILE SEQRES 15 A 269 LYS ILE GLN GLU GLY VAL VAL ASP TYR GLY ALA ARG PHE SEQRES 16 A 269 TYR PHE TYR THR SER LYS THR THR VAL ALA SER LEU ILE SEQRES 17 A 269 ASN THR LEU ASN ASP LEU ASN GLU THR LEU VAL THR MSE SEQRES 18 A 269 PRO LEU GLY TYR VAL THR HIS GLY LEU ASN LEU GLU GLU SEQRES 19 A 269 ALA ALA ARG CYS MSE ARG SER LEU LYS VAL PRO ALA THR SEQRES 20 A 269 VAL SER VAL SER SER PRO ASP ALA VAL THR ALA TYR ASN SEQRES 21 A 269 GLY TYR LEU THR SER SER SER LYS THR MODRES 8UFM MSE A 494 MET MODIFIED RESIDUE MODRES 8UFM MSE A 560 MET MODIFIED RESIDUE MODRES 8UFM MSE A 571 MET MODIFIED RESIDUE MODRES 8UFM MSE A 630 MET MODIFIED RESIDUE MODRES 8UFM MSE A 648 MET MODIFIED RESIDUE HET MSE A 494 16 HET MSE A 560 16 HET MSE A 571 8 HET MSE A 630 8 HET MSE A 648 8 HET FMT A 701 3 HET ACT A 702 4 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HET SO4 A 706 5 HET SO4 A 707 5 HET SO4 A 708 5 HET SO4 A 709 5 HETNAM MSE SELENOMETHIONINE HETNAM FMT FORMIC ACID HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 FMT C H2 O2 FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 SO4 7(O4 S 2-) FORMUL 11 HOH *208(H2 O) HELIX 1 AA1 THR A 424 LYS A 429 1 6 HELIX 2 AA2 HIS A 446 THR A 451 1 6 HELIX 3 AA3 ILE A 458 ASP A 464 1 7 HELIX 4 AA4 THR A 491 ARG A 500 1 10 HELIX 5 AA5 GLN A 514 GLY A 518 5 5 HELIX 6 AA6 THR A 520 LYS A 530 1 11 HELIX 7 AA7 ASN A 556 ARG A 568 1 13 HELIX 8 AA8 THR A 577 TYR A 588 1 12 HELIX 9 AA9 THR A 612 ASN A 624 1 13 HELIX 10 AB1 ASN A 640 ARG A 649 1 10 HELIX 11 AB2 SER A 661 TYR A 671 1 11 SHEET 1 AA1 3 CYS A 417 GLU A 420 0 SHEET 2 AA1 3 ALA A 534 ILE A 537 1 O PHE A 535 N CYS A 417 SHEET 3 AA1 3 ASN A 506 THR A 509 1 N TYR A 507 O ALA A 534 SHEET 1 AA2 3 LEU A 435 ILE A 439 0 SHEET 2 AA2 3 LEU A 478 VAL A 482 1 O THR A 479 N LEU A 437 SHEET 3 AA2 3 VAL A 472 GLU A 475 -1 N VAL A 473 O ALA A 480 SHEET 1 AA3 3 LEU A 570 CYS A 574 0 SHEET 2 AA3 3 ARG A 603 TYR A 607 1 O TYR A 605 N VAL A 573 SHEET 3 AA3 3 GLY A 596 ASP A 599 -1 N GLY A 596 O PHE A 606 SHEET 1 AA4 2 LEU A 627 THR A 629 0 SHEET 2 AA4 2 ALA A 655 VAL A 657 1 O THR A 656 N THR A 629 SSBOND 1 CYS A 516 CYS A 647 1555 1555 2.07 LINK C GLU A 493 N AMSE A 494 1555 1555 1.34 LINK C GLU A 493 N BMSE A 494 1555 1555 1.34 LINK C AMSE A 494 N LEU A 495 1555 1555 1.34 LINK C BMSE A 494 N LEU A 495 1555 1555 1.34 LINK C GLU A 559 N AMSE A 560 1555 1555 1.34 LINK C GLU A 559 N BMSE A 560 1555 1555 1.34 LINK C AMSE A 560 N LEU A 561 1555 1555 1.34 LINK C BMSE A 560 N LEU A 561 1555 1555 1.34 LINK C LEU A 570 N MSE A 571 1555 1555 1.33 LINK C MSE A 571 N PRO A 572 1555 1555 1.35 LINK C THR A 629 N MSE A 630 1555 1555 1.33 LINK C MSE A 630 N PRO A 631 1555 1555 1.35 LINK C CYS A 647 N MSE A 648 1555 1555 1.34 LINK C MSE A 648 N ARG A 649 1555 1555 1.34 CISPEP 1 ALA A 465 PRO A 466 0 0.18 CRYST1 86.274 86.274 76.674 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011591 0.006692 0.000000 0.00000 SCALE2 0.000000 0.013384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013042 0.00000