HEADER DE NOVO PROTEIN 05-OCT-23 8UG2 TITLE CRYSTAL STRUCTURE OF DE NOVO DESIGNED METAL-CONTROLLED HETERODIMER OF TITLE 2 MUTANT B1 IMMUNOGLOBULIN-BINDING DOMAIN OF STREPTOCOCCAL PROTEIN G TITLE 3 MCHET_A + MCHET_C COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA 1 DOMAIN OF STREPTOCOCCAL PROTEIN G (G BETA 1) MCHETA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA 1 DOMAIN OF STREPTOCOCCAL PROTEIN G (G BETA 1) MCHETC; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: METAL-CONTROLLED DIMER OF MUTANT B1 IMMUNOGLOBULIN- COMPND 11 BINDING DOMAIN OF STREPTOCOCCAL PROTEIN G MCHET_C (L12H, T16V, V29H, COMPND 12 Y33E, N37V) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 8 ORGANISM_TAXID: 1314; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DE NOVO, METAL BINDING, HETERODIMER, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.MEALKA,B.MANIACI,B.STEC,T.HUXFORD REVDAT 1 09-OCT-24 8UG2 0 JRNL AUTH B.MANIACI,M.MEALKA,A.BOBKOV,B.STEC,T.HUXFORD,J.LOVE JRNL TITL DESIGN OF PROTEIN HETERODIMERS UTILIZING METAL-LIGAND AND JRNL TITL 2 SALT-BRIDGE INTERACTIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.9300 - 2.9300 1.00 1275 143 0.1388 0.1661 REMARK 3 2 2.9300 - 2.3300 1.00 1223 138 0.1478 0.1875 REMARK 3 3 2.3200 - 2.0300 1.00 1233 135 0.1381 0.1400 REMARK 3 4 2.0300 - 1.8500 1.00 1217 134 0.1381 0.1643 REMARK 3 5 1.8500 - 1.7100 1.00 1216 134 0.1228 0.1674 REMARK 3 6 1.7100 - 1.6100 1.00 1207 137 0.1302 0.1506 REMARK 3 7 1.6100 - 1.5300 1.00 1226 136 0.1338 0.1911 REMARK 3 8 1.5300 - 1.4700 1.00 1198 134 0.1778 0.2164 REMARK 3 9 1.4700 - 1.4100 1.00 1223 136 0.1812 0.2289 REMARK 3 10 1.4100 - 1.3600 1.00 1201 131 0.2218 0.2837 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.144 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 889 REMARK 3 ANGLE : 1.100 1203 REMARK 3 CHIRALITY : 0.074 142 REMARK 3 PLANARITY : 0.011 152 REMARK 3 DIHEDRAL : 5.631 118 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3979 -0.5896 1.8982 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.1432 REMARK 3 T33: 0.0975 T12: -0.0020 REMARK 3 T13: 0.0202 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.3466 L22: 6.3616 REMARK 3 L33: 2.7180 L12: -1.2782 REMARK 3 L13: 0.5097 L23: -1.1227 REMARK 3 S TENSOR REMARK 3 S11: 0.0740 S12: 0.0035 S13: 0.2674 REMARK 3 S21: -0.0259 S22: -0.0659 S23: 0.1080 REMARK 3 S31: -0.1752 S32: 0.0283 S33: -0.0100 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6189 -5.4146 -3.4123 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1578 REMARK 3 T33: 0.1050 T12: 0.0328 REMARK 3 T13: -0.0172 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.3737 L22: 3.1301 REMARK 3 L33: 1.9023 L12: -0.4036 REMARK 3 L13: -0.0460 L23: -1.0427 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: 0.1762 S13: 0.1033 REMARK 3 S21: -0.1666 S22: 0.0376 S23: -0.0163 REMARK 3 S31: 0.0634 S32: -0.1187 S33: -0.0687 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4714 -2.3180 3.3233 REMARK 3 T TENSOR REMARK 3 T11: 0.0749 T22: 0.1380 REMARK 3 T33: 0.0953 T12: -0.0181 REMARK 3 T13: 0.0203 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 4.2492 L22: 4.1934 REMARK 3 L33: 4.4547 L12: -0.2872 REMARK 3 L13: 0.0092 L23: -0.9016 REMARK 3 S TENSOR REMARK 3 S11: 0.1352 S12: -0.1882 S13: -0.0209 REMARK 3 S21: 0.0187 S22: -0.1298 S23: -0.2229 REMARK 3 S31: -0.1584 S32: 0.3477 S33: -0.0114 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5052 -0.5419 1.9873 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.1363 REMARK 3 T33: 0.1730 T12: -0.0018 REMARK 3 T13: -0.0005 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 2.8007 L22: 7.6479 REMARK 3 L33: 2.6172 L12: -2.0273 REMARK 3 L13: 0.6678 L23: -0.6932 REMARK 3 S TENSOR REMARK 3 S11: -0.1659 S12: 0.0458 S13: 0.2692 REMARK 3 S21: 0.3699 S22: -0.0086 S23: 0.0239 REMARK 3 S31: -0.2145 S32: -0.0010 S33: 0.1500 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3224 -6.8173 -2.7885 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.1178 REMARK 3 T33: 0.0973 T12: -0.0061 REMARK 3 T13: 0.0084 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.3652 L22: 4.4694 REMARK 3 L33: 1.5702 L12: -0.7615 REMARK 3 L13: -0.4698 L23: -1.0281 REMARK 3 S TENSOR REMARK 3 S11: 0.0741 S12: 0.2100 S13: 0.0413 REMARK 3 S21: -0.2652 S22: -0.1390 S23: -0.0166 REMARK 3 S31: 0.1101 S32: 0.0199 S33: 0.0558 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7908 -1.3100 1.8229 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.1324 REMARK 3 T33: 0.1180 T12: 0.0193 REMARK 3 T13: 0.0059 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.5668 L22: 4.0332 REMARK 3 L33: 4.3104 L12: -0.6747 REMARK 3 L13: 0.4310 L23: -0.3406 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: 0.0068 S13: 0.3987 REMARK 3 S21: -0.0041 S22: -0.1244 S23: -0.2139 REMARK 3 S31: -0.0862 S32: 0.2632 S33: 0.1071 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13581 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 34.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.05118 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1PGA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 200 MM MAGNESIUM REMARK 280 CHLORIDE, 26% PEG10000, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.92950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 34.92950 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 12.86600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.92950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 6.43300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.92950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.29900 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.92950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.92950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.86600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 34.92950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 19.29900 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 34.92950 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 6.43300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 238 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 32 O HOH A 201 2.15 REMARK 500 OH TYR A 3 O HOH A 202 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR B 2 O2 EDO A 104 3545 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 60.72 -108.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 247 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 N REMARK 620 2 GLU A 19 OE2 116.8 REMARK 620 3 GLU A 27 OE2 34.2 83.1 REMARK 620 4 MET B 1 N 6.7 122.3 39.3 REMARK 620 5 GLU B 19 OE2 116.5 1.3 82.8 122.0 REMARK 620 6 GLU B 27 OE2 33.7 83.8 1.0 38.6 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 29 NE2 REMARK 620 2 HIS A 33 NE2 98.9 REMARK 620 3 HIS B 12 NE2 130.1 32.8 REMARK 620 4 GLU B 29 OE2 20.9 90.9 123.7 REMARK 620 5 GLU B 33 OE2 127.1 43.2 19.5 129.5 REMARK 620 N 1 2 3 4 DBREF 8UG2 A 1 56 PDB 8UG2 8UG2 1 56 DBREF 8UG2 B 1 56 PDB 8UG2 8UG2 1 56 SEQRES 1 A 56 MET THR TYR LYS LEU ILE LEU ASN GLY LYS THR ARG LYS SEQRES 2 A 56 GLY VAL LEU THR VAL GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 A 56 GLU LYS HIS PHE LYS GLN HIS ALA ASN ASP LEU GLY VAL SEQRES 4 A 56 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 A 56 THR VAL THR GLU SEQRES 1 B 56 MET THR TYR LYS LEU ILE LEU ASN GLY LYS THR HIS LYS SEQRES 2 B 56 GLY VAL VAL THR VAL GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 B 56 GLU LYS GLU PHE LYS GLN GLU ALA ASN ASP VAL GLY VAL SEQRES 4 B 56 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 B 56 THR VAL THR GLU HET ZN A 101 1 HET ZN A 102 1 HET CL A 103 1 HET EDO A 104 10 HET CL B 101 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 5 CL 2(CL 1-) FORMUL 6 EDO C2 H6 O2 FORMUL 8 HOH *96(H2 O) HELIX 1 AA1 ASP A 22 LEU A 37 1 16 HELIX 2 AA2 ASP B 22 GLY B 38 1 17 SHEET 1 AA1 4 LYS A 13 GLU A 19 0 SHEET 2 AA1 4 THR A 2 ASN A 8 -1 N LEU A 7 O GLY A 14 SHEET 3 AA1 4 THR A 51 THR A 55 1 O VAL A 54 N ASN A 8 SHEET 4 AA1 4 GLU A 42 ASP A 46 -1 N GLU A 42 O THR A 55 SHEET 1 AA2 4 LYS B 13 GLU B 19 0 SHEET 2 AA2 4 THR B 2 ASN B 8 -1 N TYR B 3 O VAL B 18 SHEET 3 AA2 4 THR B 51 THR B 55 1 O PHE B 52 N LYS B 4 SHEET 4 AA2 4 GLU B 42 ASP B 46 -1 N ASP B 46 O THR B 51 LINK N AMET A 1 ZN ZN A 101 1555 1555 2.06 LINK OE2AGLU A 19 ZN ZN A 101 1555 1555 1.90 LINK OE2AGLU A 27 ZN ZN A 101 1555 4554 1.93 LINK NE2AHIS A 29 ZN ZN A 102 1555 1555 2.10 LINK NE2AHIS A 33 ZN ZN A 102 1555 1555 2.26 LINK ZN ZN A 101 N BMET B 1 1555 1555 2.06 LINK ZN ZN A 101 OE2BGLU B 19 1555 1555 1.92 LINK ZN ZN A 101 OE2BGLU B 27 4554 1555 1.83 LINK ZN ZN A 102 NE2BHIS B 12 6555 1555 2.41 LINK ZN ZN A 102 OE2BGLU B 29 1555 1555 2.29 LINK ZN ZN A 102 OE2BGLU B 33 1555 1555 2.15 CRYST1 69.859 69.859 25.732 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014315 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014315 0.000000 0.00000 SCALE3 0.000000 0.000000 0.038862 0.00000 CONECT 1 1655 CONECT 310 1655 CONECT 437 1656 CONECT 511 1656 CONECT 835 1655 CONECT 1129 1655 CONECT 1258 1656 CONECT 1331 1656 CONECT 1655 1 310 835 1129 CONECT 1656 437 511 1258 1331 CONECT 1658 1659 1660 1662 1663 CONECT 1659 1658 1664 CONECT 1660 1658 1661 1665 1666 CONECT 1661 1660 1667 CONECT 1662 1658 CONECT 1663 1658 CONECT 1664 1659 CONECT 1665 1660 CONECT 1666 1660 CONECT 1667 1661 MASTER 397 0 5 2 8 0 0 6 977 2 20 10 END