data_8UIP # _entry.id 8UIP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8UIP pdb_00008uip 10.2210/pdb8uip/pdb WWPDB D_1000278185 ? ? EMDB EMD-42301 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-05-01 2 'Structure model' 1 1 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8UIP _pdbx_database_status.recvd_initial_deposition_date 2023-10-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM Structure of Human Ninjurin1 Ring Segment' _pdbx_database_related.db_id EMD-42301 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email wu@crystal.harvard.edu _pdbx_contact_author.name_first Hao _pdbx_contact_author.name_last Wu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7281-8579 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'David, L.' 1 0000-0002-9750-543X 'Wu, H.' 2 0000-0002-7281-8579 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 187 _citation.language ? _citation.page_first 2224 _citation.page_last 2235.e16 _citation.title 'NINJ1 mediates plasma membrane rupture by cutting and releasing membrane disks.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2024.03.008 _citation.pdbx_database_id_PubMed 38614101 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'David, L.' 1 ? primary 'Borges, J.P.' 2 ? primary 'Hollingsworth, L.R.' 3 ? primary 'Volchuk, A.' 4 ? primary 'Jansen, I.' 5 ? primary 'Garlick, E.' 6 ? primary 'Steinberg, B.E.' 7 ? primary 'Wu, H.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Ninjurin-1 _entity.formula_weight 16356.998 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDSGTEEYELNGGLPPGTPGSPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPL VVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFGVQKPLMDMAPQQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MDSGTEEYELNGGLPPGTPGSPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPL VVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFGVQKPLMDMAPQQ ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 SER n 1 4 GLY n 1 5 THR n 1 6 GLU n 1 7 GLU n 1 8 TYR n 1 9 GLU n 1 10 LEU n 1 11 ASN n 1 12 GLY n 1 13 GLY n 1 14 LEU n 1 15 PRO n 1 16 PRO n 1 17 GLY n 1 18 THR n 1 19 PRO n 1 20 GLY n 1 21 SER n 1 22 PRO n 1 23 ASP n 1 24 ALA n 1 25 SER n 1 26 PRO n 1 27 ALA n 1 28 ARG n 1 29 TRP n 1 30 GLY n 1 31 TRP n 1 32 ARG n 1 33 HIS n 1 34 GLY n 1 35 PRO n 1 36 ILE n 1 37 ASN n 1 38 VAL n 1 39 ASN n 1 40 HIS n 1 41 TYR n 1 42 ALA n 1 43 SER n 1 44 LYS n 1 45 LYS n 1 46 SER n 1 47 ALA n 1 48 ALA n 1 49 GLU n 1 50 SER n 1 51 MET n 1 52 LEU n 1 53 ASP n 1 54 ILE n 1 55 ALA n 1 56 LEU n 1 57 LEU n 1 58 MET n 1 59 ALA n 1 60 ASN n 1 61 ALA n 1 62 SER n 1 63 GLN n 1 64 LEU n 1 65 LYS n 1 66 ALA n 1 67 VAL n 1 68 VAL n 1 69 GLU n 1 70 GLN n 1 71 GLY n 1 72 PRO n 1 73 SER n 1 74 PHE n 1 75 ALA n 1 76 PHE n 1 77 TYR n 1 78 VAL n 1 79 PRO n 1 80 LEU n 1 81 VAL n 1 82 VAL n 1 83 LEU n 1 84 ILE n 1 85 SER n 1 86 ILE n 1 87 SER n 1 88 LEU n 1 89 VAL n 1 90 LEU n 1 91 GLN n 1 92 ILE n 1 93 GLY n 1 94 VAL n 1 95 GLY n 1 96 VAL n 1 97 LEU n 1 98 LEU n 1 99 ILE n 1 100 PHE n 1 101 LEU n 1 102 VAL n 1 103 LYS n 1 104 TYR n 1 105 ASP n 1 106 LEU n 1 107 ASN n 1 108 ASN n 1 109 PRO n 1 110 ALA n 1 111 LYS n 1 112 HIS n 1 113 ALA n 1 114 LYS n 1 115 LEU n 1 116 ASP n 1 117 PHE n 1 118 LEU n 1 119 ASN n 1 120 ASN n 1 121 LEU n 1 122 ALA n 1 123 THR n 1 124 GLY n 1 125 LEU n 1 126 VAL n 1 127 PHE n 1 128 ILE n 1 129 ILE n 1 130 VAL n 1 131 VAL n 1 132 VAL n 1 133 ASN n 1 134 ILE n 1 135 PHE n 1 136 ILE n 1 137 THR n 1 138 ALA n 1 139 PHE n 1 140 GLY n 1 141 VAL n 1 142 GLN n 1 143 LYS n 1 144 PRO n 1 145 LEU n 1 146 MET n 1 147 ASP n 1 148 MET n 1 149 ALA n 1 150 PRO n 1 151 GLN n 1 152 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 152 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NINJ1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia phage EcSzw_1' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 2419742 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASP 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 GLY 4 4 ? ? ? A . n A 1 5 THR 5 5 ? ? ? A . n A 1 6 GLU 6 6 ? ? ? A . n A 1 7 GLU 7 7 ? ? ? A . n A 1 8 TYR 8 8 ? ? ? A . n A 1 9 GLU 9 9 ? ? ? A . n A 1 10 LEU 10 10 ? ? ? A . n A 1 11 ASN 11 11 ? ? ? A . n A 1 12 GLY 12 12 ? ? ? A . n A 1 13 GLY 13 13 ? ? ? A . n A 1 14 LEU 14 14 ? ? ? A . n A 1 15 PRO 15 15 ? ? ? A . n A 1 16 PRO 16 16 ? ? ? A . n A 1 17 GLY 17 17 ? ? ? A . n A 1 18 THR 18 18 ? ? ? A . n A 1 19 PRO 19 19 ? ? ? A . n A 1 20 GLY 20 20 ? ? ? A . n A 1 21 SER 21 21 ? ? ? A . n A 1 22 PRO 22 22 ? ? ? A . n A 1 23 ASP 23 23 ? ? ? A . n A 1 24 ALA 24 24 ? ? ? A . n A 1 25 SER 25 25 ? ? ? A . n A 1 26 PRO 26 26 ? ? ? A . n A 1 27 ALA 27 27 ? ? ? A . n A 1 28 ARG 28 28 ? ? ? A . n A 1 29 TRP 29 29 ? ? ? A . n A 1 30 GLY 30 30 ? ? ? A . n A 1 31 TRP 31 31 ? ? ? A . n A 1 32 ARG 32 32 ? ? ? A . n A 1 33 HIS 33 33 ? ? ? A . n A 1 34 GLY 34 34 ? ? ? A . n A 1 35 PRO 35 35 ? ? ? A . n A 1 36 ILE 36 36 ? ? ? A . n A 1 37 ASN 37 37 ? ? ? A . n A 1 38 VAL 38 38 ? ? ? A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 MET 51 51 51 MET MET A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 HIS 112 112 112 HIS HIS A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ASN 133 133 133 ASN ASN A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 GLY 140 140 ? ? ? A . n A 1 141 VAL 141 141 ? ? ? A . n A 1 142 GLN 142 142 ? ? ? A . n A 1 143 LYS 143 143 ? ? ? A . n A 1 144 PRO 144 144 ? ? ? A . n A 1 145 LEU 145 145 ? ? ? A . n A 1 146 MET 146 146 ? ? ? A . n A 1 147 ASP 147 147 ? ? ? A . n A 1 148 MET 148 148 ? ? ? A . n A 1 149 ALA 149 149 ? ? ? A . n A 1 150 PRO 150 150 ? ? ? A . n A 1 151 GLN 151 151 ? ? ? A . n A 1 152 GLN 152 152 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 ASP 2 2 ? ? ? B . n B 1 3 SER 3 3 ? ? ? B . n B 1 4 GLY 4 4 ? ? ? B . n B 1 5 THR 5 5 ? ? ? B . n B 1 6 GLU 6 6 ? ? ? B . n B 1 7 GLU 7 7 ? ? ? B . n B 1 8 TYR 8 8 ? ? ? B . n B 1 9 GLU 9 9 ? ? ? B . n B 1 10 LEU 10 10 ? ? ? B . n B 1 11 ASN 11 11 ? ? ? B . n B 1 12 GLY 12 12 ? ? ? B . n B 1 13 GLY 13 13 ? ? ? B . n B 1 14 LEU 14 14 ? ? ? B . n B 1 15 PRO 15 15 ? ? ? B . n B 1 16 PRO 16 16 ? ? ? B . n B 1 17 GLY 17 17 ? ? ? B . n B 1 18 THR 18 18 ? ? ? B . n B 1 19 PRO 19 19 ? ? ? B . n B 1 20 GLY 20 20 ? ? ? B . n B 1 21 SER 21 21 ? ? ? B . n B 1 22 PRO 22 22 ? ? ? B . n B 1 23 ASP 23 23 ? ? ? B . n B 1 24 ALA 24 24 ? ? ? B . n B 1 25 SER 25 25 ? ? ? B . n B 1 26 PRO 26 26 ? ? ? B . n B 1 27 ALA 27 27 ? ? ? B . n B 1 28 ARG 28 28 ? ? ? B . n B 1 29 TRP 29 29 ? ? ? B . n B 1 30 GLY 30 30 ? ? ? B . n B 1 31 TRP 31 31 ? ? ? B . n B 1 32 ARG 32 32 ? ? ? B . n B 1 33 HIS 33 33 ? ? ? B . n B 1 34 GLY 34 34 ? ? ? B . n B 1 35 PRO 35 35 ? ? ? B . n B 1 36 ILE 36 36 ? ? ? B . n B 1 37 ASN 37 37 ? ? ? B . n B 1 38 VAL 38 38 ? ? ? B . n B 1 39 ASN 39 39 39 ASN ASN B . n B 1 40 HIS 40 40 40 HIS HIS B . n B 1 41 TYR 41 41 41 TYR TYR B . n B 1 42 ALA 42 42 42 ALA ALA B . n B 1 43 SER 43 43 43 SER SER B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 ALA 47 47 47 ALA ALA B . n B 1 48 ALA 48 48 48 ALA ALA B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 SER 50 50 50 SER SER B . n B 1 51 MET 51 51 51 MET MET B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 ASP 53 53 53 ASP ASP B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 ALA 55 55 55 ALA ALA B . n B 1 56 LEU 56 56 56 LEU LEU B . n B 1 57 LEU 57 57 57 LEU LEU B . n B 1 58 MET 58 58 58 MET MET B . n B 1 59 ALA 59 59 59 ALA ALA B . n B 1 60 ASN 60 60 60 ASN ASN B . n B 1 61 ALA 61 61 61 ALA ALA B . n B 1 62 SER 62 62 62 SER SER B . n B 1 63 GLN 63 63 63 GLN GLN B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 LYS 65 65 65 LYS LYS B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 VAL 68 68 68 VAL VAL B . n B 1 69 GLU 69 69 69 GLU GLU B . n B 1 70 GLN 70 70 70 GLN GLN B . n B 1 71 GLY 71 71 71 GLY GLY B . n B 1 72 PRO 72 72 72 PRO PRO B . n B 1 73 SER 73 73 73 SER SER B . n B 1 74 PHE 74 74 74 PHE PHE B . n B 1 75 ALA 75 75 75 ALA ALA B . n B 1 76 PHE 76 76 76 PHE PHE B . n B 1 77 TYR 77 77 77 TYR TYR B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 LEU 80 80 80 LEU LEU B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 SER 85 85 85 SER SER B . n B 1 86 ILE 86 86 86 ILE ILE B . n B 1 87 SER 87 87 87 SER SER B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 VAL 89 89 89 VAL VAL B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 GLN 91 91 91 GLN GLN B . n B 1 92 ILE 92 92 92 ILE ILE B . n B 1 93 GLY 93 93 93 GLY GLY B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 GLY 95 95 95 GLY GLY B . n B 1 96 VAL 96 96 96 VAL VAL B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 LEU 98 98 98 LEU LEU B . n B 1 99 ILE 99 99 99 ILE ILE B . n B 1 100 PHE 100 100 100 PHE PHE B . n B 1 101 LEU 101 101 101 LEU LEU B . n B 1 102 VAL 102 102 102 VAL VAL B . n B 1 103 LYS 103 103 103 LYS LYS B . n B 1 104 TYR 104 104 104 TYR TYR B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 LEU 106 106 106 LEU LEU B . n B 1 107 ASN 107 107 107 ASN ASN B . n B 1 108 ASN 108 108 108 ASN ASN B . n B 1 109 PRO 109 109 109 PRO PRO B . n B 1 110 ALA 110 110 110 ALA ALA B . n B 1 111 LYS 111 111 111 LYS LYS B . n B 1 112 HIS 112 112 112 HIS HIS B . n B 1 113 ALA 113 113 113 ALA ALA B . n B 1 114 LYS 114 114 114 LYS LYS B . n B 1 115 LEU 115 115 115 LEU LEU B . n B 1 116 ASP 116 116 116 ASP ASP B . n B 1 117 PHE 117 117 117 PHE PHE B . n B 1 118 LEU 118 118 118 LEU LEU B . n B 1 119 ASN 119 119 119 ASN ASN B . n B 1 120 ASN 120 120 120 ASN ASN B . n B 1 121 LEU 121 121 121 LEU LEU B . n B 1 122 ALA 122 122 122 ALA ALA B . n B 1 123 THR 123 123 123 THR THR B . n B 1 124 GLY 124 124 124 GLY GLY B . n B 1 125 LEU 125 125 125 LEU LEU B . n B 1 126 VAL 126 126 126 VAL VAL B . n B 1 127 PHE 127 127 127 PHE PHE B . n B 1 128 ILE 128 128 128 ILE ILE B . n B 1 129 ILE 129 129 129 ILE ILE B . n B 1 130 VAL 130 130 130 VAL VAL B . n B 1 131 VAL 131 131 131 VAL VAL B . n B 1 132 VAL 132 132 132 VAL VAL B . n B 1 133 ASN 133 133 133 ASN ASN B . n B 1 134 ILE 134 134 134 ILE ILE B . n B 1 135 PHE 135 135 135 PHE PHE B . n B 1 136 ILE 136 136 136 ILE ILE B . n B 1 137 THR 137 137 137 THR THR B . n B 1 138 ALA 138 138 138 ALA ALA B . n B 1 139 PHE 139 139 139 PHE PHE B . n B 1 140 GLY 140 140 ? ? ? B . n B 1 141 VAL 141 141 ? ? ? B . n B 1 142 GLN 142 142 ? ? ? B . n B 1 143 LYS 143 143 ? ? ? B . n B 1 144 PRO 144 144 ? ? ? B . n B 1 145 LEU 145 145 ? ? ? B . n B 1 146 MET 146 146 ? ? ? B . n B 1 147 ASP 147 147 ? ? ? B . n B 1 148 MET 148 148 ? ? ? B . n B 1 149 ALA 149 149 ? ? ? B . n B 1 150 PRO 150 150 ? ? ? B . n B 1 151 GLN 151 151 ? ? ? B . n B 1 152 GLN 152 152 ? ? ? B . n C 1 1 MET 1 1 ? ? ? C . n C 1 2 ASP 2 2 ? ? ? C . n C 1 3 SER 3 3 ? ? ? C . n C 1 4 GLY 4 4 ? ? ? C . n C 1 5 THR 5 5 ? ? ? C . n C 1 6 GLU 6 6 ? ? ? C . n C 1 7 GLU 7 7 ? ? ? C . n C 1 8 TYR 8 8 ? ? ? C . n C 1 9 GLU 9 9 ? ? ? C . n C 1 10 LEU 10 10 ? ? ? C . n C 1 11 ASN 11 11 ? ? ? C . n C 1 12 GLY 12 12 ? ? ? C . n C 1 13 GLY 13 13 ? ? ? C . n C 1 14 LEU 14 14 ? ? ? C . n C 1 15 PRO 15 15 ? ? ? C . n C 1 16 PRO 16 16 ? ? ? C . n C 1 17 GLY 17 17 ? ? ? C . n C 1 18 THR 18 18 ? ? ? C . n C 1 19 PRO 19 19 ? ? ? C . n C 1 20 GLY 20 20 ? ? ? C . n C 1 21 SER 21 21 ? ? ? C . n C 1 22 PRO 22 22 ? ? ? C . n C 1 23 ASP 23 23 ? ? ? C . n C 1 24 ALA 24 24 ? ? ? C . n C 1 25 SER 25 25 ? ? ? C . n C 1 26 PRO 26 26 ? ? ? C . n C 1 27 ALA 27 27 ? ? ? C . n C 1 28 ARG 28 28 ? ? ? C . n C 1 29 TRP 29 29 ? ? ? C . n C 1 30 GLY 30 30 ? ? ? C . n C 1 31 TRP 31 31 ? ? ? C . n C 1 32 ARG 32 32 ? ? ? C . n C 1 33 HIS 33 33 ? ? ? C . n C 1 34 GLY 34 34 ? ? ? C . n C 1 35 PRO 35 35 ? ? ? C . n C 1 36 ILE 36 36 ? ? ? C . n C 1 37 ASN 37 37 ? ? ? C . n C 1 38 VAL 38 38 ? ? ? C . n C 1 39 ASN 39 39 39 ASN ASN C . n C 1 40 HIS 40 40 40 HIS HIS C . n C 1 41 TYR 41 41 41 TYR TYR C . n C 1 42 ALA 42 42 42 ALA ALA C . n C 1 43 SER 43 43 43 SER SER C . n C 1 44 LYS 44 44 44 LYS LYS C . n C 1 45 LYS 45 45 45 LYS LYS C . n C 1 46 SER 46 46 46 SER SER C . n C 1 47 ALA 47 47 47 ALA ALA C . n C 1 48 ALA 48 48 48 ALA ALA C . n C 1 49 GLU 49 49 49 GLU GLU C . n C 1 50 SER 50 50 50 SER SER C . n C 1 51 MET 51 51 51 MET MET C . n C 1 52 LEU 52 52 52 LEU LEU C . n C 1 53 ASP 53 53 53 ASP ASP C . n C 1 54 ILE 54 54 54 ILE ILE C . n C 1 55 ALA 55 55 55 ALA ALA C . n C 1 56 LEU 56 56 56 LEU LEU C . n C 1 57 LEU 57 57 57 LEU LEU C . n C 1 58 MET 58 58 58 MET MET C . n C 1 59 ALA 59 59 59 ALA ALA C . n C 1 60 ASN 60 60 60 ASN ASN C . n C 1 61 ALA 61 61 61 ALA ALA C . n C 1 62 SER 62 62 62 SER SER C . n C 1 63 GLN 63 63 63 GLN GLN C . n C 1 64 LEU 64 64 64 LEU LEU C . n C 1 65 LYS 65 65 65 LYS LYS C . n C 1 66 ALA 66 66 66 ALA ALA C . n C 1 67 VAL 67 67 67 VAL VAL C . n C 1 68 VAL 68 68 68 VAL VAL C . n C 1 69 GLU 69 69 69 GLU GLU C . n C 1 70 GLN 70 70 70 GLN GLN C . n C 1 71 GLY 71 71 71 GLY GLY C . n C 1 72 PRO 72 72 72 PRO PRO C . n C 1 73 SER 73 73 73 SER SER C . n C 1 74 PHE 74 74 74 PHE PHE C . n C 1 75 ALA 75 75 75 ALA ALA C . n C 1 76 PHE 76 76 76 PHE PHE C . n C 1 77 TYR 77 77 77 TYR TYR C . n C 1 78 VAL 78 78 78 VAL VAL C . n C 1 79 PRO 79 79 79 PRO PRO C . n C 1 80 LEU 80 80 80 LEU LEU C . n C 1 81 VAL 81 81 81 VAL VAL C . n C 1 82 VAL 82 82 82 VAL VAL C . n C 1 83 LEU 83 83 83 LEU LEU C . n C 1 84 ILE 84 84 84 ILE ILE C . n C 1 85 SER 85 85 85 SER SER C . n C 1 86 ILE 86 86 86 ILE ILE C . n C 1 87 SER 87 87 87 SER SER C . n C 1 88 LEU 88 88 88 LEU LEU C . n C 1 89 VAL 89 89 89 VAL VAL C . n C 1 90 LEU 90 90 90 LEU LEU C . n C 1 91 GLN 91 91 91 GLN GLN C . n C 1 92 ILE 92 92 92 ILE ILE C . n C 1 93 GLY 93 93 93 GLY GLY C . n C 1 94 VAL 94 94 94 VAL VAL C . n C 1 95 GLY 95 95 95 GLY GLY C . n C 1 96 VAL 96 96 96 VAL VAL C . n C 1 97 LEU 97 97 97 LEU LEU C . n C 1 98 LEU 98 98 98 LEU LEU C . n C 1 99 ILE 99 99 99 ILE ILE C . n C 1 100 PHE 100 100 100 PHE PHE C . n C 1 101 LEU 101 101 101 LEU LEU C . n C 1 102 VAL 102 102 102 VAL VAL C . n C 1 103 LYS 103 103 103 LYS LYS C . n C 1 104 TYR 104 104 104 TYR TYR C . n C 1 105 ASP 105 105 105 ASP ASP C . n C 1 106 LEU 106 106 106 LEU LEU C . n C 1 107 ASN 107 107 107 ASN ASN C . n C 1 108 ASN 108 108 108 ASN ASN C . n C 1 109 PRO 109 109 109 PRO PRO C . n C 1 110 ALA 110 110 110 ALA ALA C . n C 1 111 LYS 111 111 111 LYS LYS C . n C 1 112 HIS 112 112 112 HIS HIS C . n C 1 113 ALA 113 113 113 ALA ALA C . n C 1 114 LYS 114 114 114 LYS LYS C . n C 1 115 LEU 115 115 115 LEU LEU C . n C 1 116 ASP 116 116 116 ASP ASP C . n C 1 117 PHE 117 117 117 PHE PHE C . n C 1 118 LEU 118 118 118 LEU LEU C . n C 1 119 ASN 119 119 119 ASN ASN C . n C 1 120 ASN 120 120 120 ASN ASN C . n C 1 121 LEU 121 121 121 LEU LEU C . n C 1 122 ALA 122 122 122 ALA ALA C . n C 1 123 THR 123 123 123 THR THR C . n C 1 124 GLY 124 124 124 GLY GLY C . n C 1 125 LEU 125 125 125 LEU LEU C . n C 1 126 VAL 126 126 126 VAL VAL C . n C 1 127 PHE 127 127 127 PHE PHE C . n C 1 128 ILE 128 128 128 ILE ILE C . n C 1 129 ILE 129 129 129 ILE ILE C . n C 1 130 VAL 130 130 130 VAL VAL C . n C 1 131 VAL 131 131 131 VAL VAL C . n C 1 132 VAL 132 132 132 VAL VAL C . n C 1 133 ASN 133 133 133 ASN ASN C . n C 1 134 ILE 134 134 134 ILE ILE C . n C 1 135 PHE 135 135 135 PHE PHE C . n C 1 136 ILE 136 136 136 ILE ILE C . n C 1 137 THR 137 137 137 THR THR C . n C 1 138 ALA 138 138 138 ALA ALA C . n C 1 139 PHE 139 139 139 PHE PHE C . n C 1 140 GLY 140 140 ? ? ? C . n C 1 141 VAL 141 141 ? ? ? C . n C 1 142 GLN 142 142 ? ? ? C . n C 1 143 LYS 143 143 ? ? ? C . n C 1 144 PRO 144 144 ? ? ? C . n C 1 145 LEU 145 145 ? ? ? C . n C 1 146 MET 146 146 ? ? ? C . n C 1 147 ASP 147 147 ? ? ? C . n C 1 148 MET 148 148 ? ? ? C . n C 1 149 ALA 149 149 ? ? ? C . n C 1 150 PRO 150 150 ? ? ? C . n C 1 151 GLN 151 151 ? ? ? C . n C 1 152 GLN 152 152 ? ? ? C . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8UIP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8UIP _struct.title 'Cryo-EM Structure of Human Ninjurin1 curved oligomer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8UIP _struct_keywords.text 'Ninjurin1, NINJ1, inflammation, inflammasome, pyroptosis, plasma membrane rupture, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NINJ1_HUMAN _struct_ref.pdbx_db_accession Q92982 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDSGTEEYELNGGLPPGTPGSPDASPARWGWRHGPINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPL VVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVNIFITAFGVQKPLMDMAPQQ ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8UIP A 1 ? 152 ? Q92982 1 ? 152 ? 1 152 2 1 8UIP B 1 ? 152 ? Q92982 1 ? 152 ? 1 152 3 1 8UIP C 1 ? 152 ? Q92982 1 ? 152 ? 1 152 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 43 ? GLU A 49 ? SER A 43 GLU A 49 1 ? 7 HELX_P HELX_P2 AA2 ILE A 54 ? GLN A 70 ? ILE A 54 GLN A 70 1 ? 17 HELX_P HELX_P3 AA3 PRO A 79 ? PHE A 100 ? PRO A 79 PHE A 100 1 ? 22 HELX_P HELX_P4 AA4 ALA A 110 ? PHE A 139 ? ALA A 110 PHE A 139 1 ? 30 HELX_P HELX_P5 AA5 SER B 43 ? GLU B 49 ? SER B 43 GLU B 49 1 ? 7 HELX_P HELX_P6 AA6 ILE B 54 ? GLN B 70 ? ILE B 54 GLN B 70 1 ? 17 HELX_P HELX_P7 AA7 PRO B 79 ? PHE B 100 ? PRO B 79 PHE B 100 1 ? 22 HELX_P HELX_P8 AA8 ALA B 110 ? PHE B 139 ? ALA B 110 PHE B 139 1 ? 30 HELX_P HELX_P9 AA9 SER C 43 ? GLU C 49 ? SER C 43 GLU C 49 1 ? 7 HELX_P HELX_P10 AB1 ILE C 54 ? GLN C 70 ? ILE C 54 GLN C 70 1 ? 17 HELX_P HELX_P11 AB2 PRO C 79 ? PHE C 100 ? PRO C 79 PHE C 100 1 ? 22 HELX_P HELX_P12 AB3 ALA C 110 ? PHE C 139 ? ALA C 110 PHE C 139 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O C ALA 42 ? ? OG C SER 46 ? ? 2.09 2 1 O A ALA 42 ? ? OG A SER 46 ? ? 2.09 3 1 O B ALA 42 ? ? OG B SER 46 ? ? 2.09 4 1 O B PHE 117 ? ? ND2 B ASN 120 ? ? 2.15 5 1 O A PHE 117 ? ? ND2 A ASN 120 ? ? 2.15 6 1 O C PHE 117 ? ? ND2 C ASN 120 ? ? 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 51 ? ? 71.44 -16.21 2 1 LEU A 52 ? ? -175.50 138.25 3 1 PHE A 76 ? ? -97.79 48.96 4 1 ASP A 105 ? ? 58.57 11.59 5 1 MET B 51 ? ? 71.41 -16.14 6 1 LEU B 52 ? ? -175.55 138.30 7 1 PHE B 76 ? ? -97.74 48.95 8 1 ASP B 105 ? ? 58.58 11.60 9 1 MET C 51 ? ? 71.46 -16.21 10 1 LEU C 52 ? ? -175.50 138.33 11 1 PHE C 76 ? ? -97.78 48.96 12 1 ASP C 105 ? ? 58.66 11.54 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8UIP _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol 'BACKBONE TRACE' # _em_3d_reconstruction.entry_id 8UIP _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 626231 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Ninjurin 1 ring oligomer' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8UIP _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8UIP _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8UIP _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASP 2 ? A ASP 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A GLY 4 ? A GLY 4 5 1 Y 1 A THR 5 ? A THR 5 6 1 Y 1 A GLU 6 ? A GLU 6 7 1 Y 1 A GLU 7 ? A GLU 7 8 1 Y 1 A TYR 8 ? A TYR 8 9 1 Y 1 A GLU 9 ? A GLU 9 10 1 Y 1 A LEU 10 ? A LEU 10 11 1 Y 1 A ASN 11 ? A ASN 11 12 1 Y 1 A GLY 12 ? A GLY 12 13 1 Y 1 A GLY 13 ? A GLY 13 14 1 Y 1 A LEU 14 ? A LEU 14 15 1 Y 1 A PRO 15 ? A PRO 15 16 1 Y 1 A PRO 16 ? A PRO 16 17 1 Y 1 A GLY 17 ? A GLY 17 18 1 Y 1 A THR 18 ? A THR 18 19 1 Y 1 A PRO 19 ? A PRO 19 20 1 Y 1 A GLY 20 ? A GLY 20 21 1 Y 1 A SER 21 ? A SER 21 22 1 Y 1 A PRO 22 ? A PRO 22 23 1 Y 1 A ASP 23 ? A ASP 23 24 1 Y 1 A ALA 24 ? A ALA 24 25 1 Y 1 A SER 25 ? A SER 25 26 1 Y 1 A PRO 26 ? A PRO 26 27 1 Y 1 A ALA 27 ? A ALA 27 28 1 Y 1 A ARG 28 ? A ARG 28 29 1 Y 1 A TRP 29 ? A TRP 29 30 1 Y 1 A GLY 30 ? A GLY 30 31 1 Y 1 A TRP 31 ? A TRP 31 32 1 Y 1 A ARG 32 ? A ARG 32 33 1 Y 1 A HIS 33 ? A HIS 33 34 1 Y 1 A GLY 34 ? A GLY 34 35 1 Y 1 A PRO 35 ? A PRO 35 36 1 Y 1 A ILE 36 ? A ILE 36 37 1 Y 1 A ASN 37 ? A ASN 37 38 1 Y 1 A VAL 38 ? A VAL 38 39 1 Y 1 A GLY 140 ? A GLY 140 40 1 Y 1 A VAL 141 ? A VAL 141 41 1 Y 1 A GLN 142 ? A GLN 142 42 1 Y 1 A LYS 143 ? A LYS 143 43 1 Y 1 A PRO 144 ? A PRO 144 44 1 Y 1 A LEU 145 ? A LEU 145 45 1 Y 1 A MET 146 ? A MET 146 46 1 Y 1 A ASP 147 ? A ASP 147 47 1 Y 1 A MET 148 ? A MET 148 48 1 Y 1 A ALA 149 ? A ALA 149 49 1 Y 1 A PRO 150 ? A PRO 150 50 1 Y 1 A GLN 151 ? A GLN 151 51 1 Y 1 A GLN 152 ? A GLN 152 52 1 Y 1 B MET 1 ? B MET 1 53 1 Y 1 B ASP 2 ? B ASP 2 54 1 Y 1 B SER 3 ? B SER 3 55 1 Y 1 B GLY 4 ? B GLY 4 56 1 Y 1 B THR 5 ? B THR 5 57 1 Y 1 B GLU 6 ? B GLU 6 58 1 Y 1 B GLU 7 ? B GLU 7 59 1 Y 1 B TYR 8 ? B TYR 8 60 1 Y 1 B GLU 9 ? B GLU 9 61 1 Y 1 B LEU 10 ? B LEU 10 62 1 Y 1 B ASN 11 ? B ASN 11 63 1 Y 1 B GLY 12 ? B GLY 12 64 1 Y 1 B GLY 13 ? B GLY 13 65 1 Y 1 B LEU 14 ? B LEU 14 66 1 Y 1 B PRO 15 ? B PRO 15 67 1 Y 1 B PRO 16 ? B PRO 16 68 1 Y 1 B GLY 17 ? B GLY 17 69 1 Y 1 B THR 18 ? B THR 18 70 1 Y 1 B PRO 19 ? B PRO 19 71 1 Y 1 B GLY 20 ? B GLY 20 72 1 Y 1 B SER 21 ? B SER 21 73 1 Y 1 B PRO 22 ? B PRO 22 74 1 Y 1 B ASP 23 ? B ASP 23 75 1 Y 1 B ALA 24 ? B ALA 24 76 1 Y 1 B SER 25 ? B SER 25 77 1 Y 1 B PRO 26 ? B PRO 26 78 1 Y 1 B ALA 27 ? B ALA 27 79 1 Y 1 B ARG 28 ? B ARG 28 80 1 Y 1 B TRP 29 ? B TRP 29 81 1 Y 1 B GLY 30 ? B GLY 30 82 1 Y 1 B TRP 31 ? B TRP 31 83 1 Y 1 B ARG 32 ? B ARG 32 84 1 Y 1 B HIS 33 ? B HIS 33 85 1 Y 1 B GLY 34 ? B GLY 34 86 1 Y 1 B PRO 35 ? B PRO 35 87 1 Y 1 B ILE 36 ? B ILE 36 88 1 Y 1 B ASN 37 ? B ASN 37 89 1 Y 1 B VAL 38 ? B VAL 38 90 1 Y 1 B GLY 140 ? B GLY 140 91 1 Y 1 B VAL 141 ? B VAL 141 92 1 Y 1 B GLN 142 ? B GLN 142 93 1 Y 1 B LYS 143 ? B LYS 143 94 1 Y 1 B PRO 144 ? B PRO 144 95 1 Y 1 B LEU 145 ? B LEU 145 96 1 Y 1 B MET 146 ? B MET 146 97 1 Y 1 B ASP 147 ? B ASP 147 98 1 Y 1 B MET 148 ? B MET 148 99 1 Y 1 B ALA 149 ? B ALA 149 100 1 Y 1 B PRO 150 ? B PRO 150 101 1 Y 1 B GLN 151 ? B GLN 151 102 1 Y 1 B GLN 152 ? B GLN 152 103 1 Y 1 C MET 1 ? C MET 1 104 1 Y 1 C ASP 2 ? C ASP 2 105 1 Y 1 C SER 3 ? C SER 3 106 1 Y 1 C GLY 4 ? C GLY 4 107 1 Y 1 C THR 5 ? C THR 5 108 1 Y 1 C GLU 6 ? C GLU 6 109 1 Y 1 C GLU 7 ? C GLU 7 110 1 Y 1 C TYR 8 ? C TYR 8 111 1 Y 1 C GLU 9 ? C GLU 9 112 1 Y 1 C LEU 10 ? C LEU 10 113 1 Y 1 C ASN 11 ? C ASN 11 114 1 Y 1 C GLY 12 ? C GLY 12 115 1 Y 1 C GLY 13 ? C GLY 13 116 1 Y 1 C LEU 14 ? C LEU 14 117 1 Y 1 C PRO 15 ? C PRO 15 118 1 Y 1 C PRO 16 ? C PRO 16 119 1 Y 1 C GLY 17 ? C GLY 17 120 1 Y 1 C THR 18 ? C THR 18 121 1 Y 1 C PRO 19 ? C PRO 19 122 1 Y 1 C GLY 20 ? C GLY 20 123 1 Y 1 C SER 21 ? C SER 21 124 1 Y 1 C PRO 22 ? C PRO 22 125 1 Y 1 C ASP 23 ? C ASP 23 126 1 Y 1 C ALA 24 ? C ALA 24 127 1 Y 1 C SER 25 ? C SER 25 128 1 Y 1 C PRO 26 ? C PRO 26 129 1 Y 1 C ALA 27 ? C ALA 27 130 1 Y 1 C ARG 28 ? C ARG 28 131 1 Y 1 C TRP 29 ? C TRP 29 132 1 Y 1 C GLY 30 ? C GLY 30 133 1 Y 1 C TRP 31 ? C TRP 31 134 1 Y 1 C ARG 32 ? C ARG 32 135 1 Y 1 C HIS 33 ? C HIS 33 136 1 Y 1 C GLY 34 ? C GLY 34 137 1 Y 1 C PRO 35 ? C PRO 35 138 1 Y 1 C ILE 36 ? C ILE 36 139 1 Y 1 C ASN 37 ? C ASN 37 140 1 Y 1 C VAL 38 ? C VAL 38 141 1 Y 1 C GLY 140 ? C GLY 140 142 1 Y 1 C VAL 141 ? C VAL 141 143 1 Y 1 C GLN 142 ? C GLN 142 144 1 Y 1 C LYS 143 ? C LYS 143 145 1 Y 1 C PRO 144 ? C PRO 144 146 1 Y 1 C LEU 145 ? C LEU 145 147 1 Y 1 C MET 146 ? C MET 146 148 1 Y 1 C ASP 147 ? C ASP 147 149 1 Y 1 C MET 148 ? C MET 148 150 1 Y 1 C ALA 149 ? C ALA 149 151 1 Y 1 C PRO 150 ? C PRO 150 152 1 Y 1 C GLN 151 ? C GLN 151 153 1 Y 1 C GLN 152 ? C GLN 152 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 2419742 _em_entity_assembly_recombinant.organism 'Escherichia phage EcSzw_1' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 51.3 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 0.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AI139914 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8UIP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_