HEADER TRANSFERASE 11-OCT-23 8UJH TITLE X-RAY CRYSTAL STRUCTURE OF TOXOPLASMA GONDII GALNAC-T3 IN COMPLEX WITH TITLE 2 UDP-GALNAC, MN2+, AND A CST1 DIGLYCOPEPTIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.41; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SAG-RELATED SEQUENCE SRS44; COMPND 8 CHAIN: C; COMPND 9 EC: 3.4.21.72; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII ME49; SOURCE 3 ORGANISM_TAXID: 508771; SOURCE 4 GENE: TGME49_318730; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SMD1168; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 11 ORGANISM_TAXID: 5811 KEYWDS GT-A FOLD GALNAC GLYCOSYLTRANSFERASE, MUCIN-TYPE O-GLYCOSYLATION, KEYWDS 2 TOXOPLASMA GONDII CYST WALL GLYCOSYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.KUMAR,N.L.SAMARA REVDAT 2 22-MAY-24 8UJH 1 JRNL REVDAT 1 15-MAY-24 8UJH 0 JRNL AUTH P.KUMAR,T.TOMITA,T.A.GERKEN,C.J.BALLARD,Y.S.LEE,L.M.WEISS, JRNL AUTH 2 N.L.SAMARA JRNL TITL A TOXOPLASMA GONDII O-GLYCOSYLTRANSFERASE THAT MODULATES JRNL TITL 2 BRADYZOITE CYST WALL RIGIDITY IS DISTINCT FROM HOST JRNL TITL 3 HOMOLOGUES. JRNL REF NAT COMMUN V. 15 3792 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38710711 JRNL DOI 10.1038/S41467-024-48253-W REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 20556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7400 - 5.0600 0.99 2956 146 0.1680 0.1940 REMARK 3 2 5.0600 - 4.0200 1.00 2825 160 0.1335 0.1780 REMARK 3 3 4.0200 - 3.5100 1.00 2770 154 0.1705 0.2229 REMARK 3 4 3.5100 - 3.1900 1.00 2787 142 0.2172 0.2723 REMARK 3 5 3.1900 - 2.9600 1.00 2785 130 0.2458 0.3098 REMARK 3 6 2.9600 - 2.7900 1.00 2755 140 0.2821 0.3798 REMARK 3 7 2.7900 - 2.6500 0.97 2672 134 0.2943 0.3175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.337 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.683 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4431 REMARK 3 ANGLE : 0.513 6011 REMARK 3 CHIRALITY : 0.040 623 REMARK 3 PLANARITY : 0.004 782 REMARK 3 DIHEDRAL : 13.183 1646 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1186 -17.6321 20.2794 REMARK 3 T TENSOR REMARK 3 T11: 0.4352 T22: 0.3871 REMARK 3 T33: 0.2959 T12: -0.1171 REMARK 3 T13: -0.0335 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 3.1540 L22: 2.7660 REMARK 3 L33: 1.8633 L12: 0.9702 REMARK 3 L13: -0.3178 L23: 0.4016 REMARK 3 S TENSOR REMARK 3 S11: -0.3550 S12: 0.5102 S13: -0.2650 REMARK 3 S21: -0.5392 S22: 0.1684 S23: 0.2323 REMARK 3 S31: -0.0148 S32: -0.0893 S33: 0.1559 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 440 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4072 -9.4351 38.3389 REMARK 3 T TENSOR REMARK 3 T11: 0.3752 T22: 0.2631 REMARK 3 T33: 0.2939 T12: 0.0138 REMARK 3 T13: -0.0186 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.1948 L22: 0.7709 REMARK 3 L33: 1.6250 L12: 0.8305 REMARK 3 L13: 0.1600 L23: 0.0644 REMARK 3 S TENSOR REMARK 3 S11: -0.1754 S12: -0.0097 S13: -0.0111 REMARK 3 S21: -0.0711 S22: 0.0541 S23: 0.1923 REMARK 3 S31: -0.1914 S32: -0.0145 S33: 0.1305 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 441 THROUGH 628 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8433 -16.9106 60.0071 REMARK 3 T TENSOR REMARK 3 T11: 0.3031 T22: 0.2362 REMARK 3 T33: 0.2616 T12: 0.0233 REMARK 3 T13: -0.0028 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 0.6376 L22: 3.9023 REMARK 3 L33: 6.1932 L12: -0.1258 REMARK 3 L13: 0.3061 L23: -3.1204 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: -0.0777 S13: 0.0001 REMARK 3 S21: 0.3815 S22: 0.0700 S23: 0.0666 REMARK 3 S31: -0.1370 S32: -0.0356 S33: 0.0380 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6093 -20.7769 40.6505 REMARK 3 T TENSOR REMARK 3 T11: 1.2372 T22: 0.9140 REMARK 3 T33: 0.5058 T12: -0.1142 REMARK 3 T13: -0.0095 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 7.6984 L22: 1.1875 REMARK 3 L33: 5.3203 L12: 2.5715 REMARK 3 L13: -3.2931 L23: -2.2338 REMARK 3 S TENSOR REMARK 3 S11: 0.6416 S12: 0.7359 S13: 0.5928 REMARK 3 S21: 0.3845 S22: -0.1361 S23: -0.1701 REMARK 3 S31: -0.7213 S32: -1.1621 S33: -0.4814 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR; REMARK 200 LIQUID NITROGEN COOLED REMARK 200 OPTICS : FMB OXFORD DUAL CRYSTAL DCM; IDT REMARK 200 KB MIRROR SYSTEM REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20609 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.29000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 1.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES PH 9.5 AND 14-20% PEG 8000 REMARK 280 (W/V), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.41650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.02350 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.41650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.02350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 73 REMARK 465 ALA A 74 REMARK 465 ARG A 75 REMARK 465 ASP A 76 REMARK 465 VAL A 77 REMARK 465 GLN A 78 REMARK 465 GLU A 79 REMARK 465 GLY A 80 REMARK 465 VAL A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 PHE A 84 REMARK 465 GLU A 85 REMARK 465 GLU A 86 REMARK 465 SER A 87 REMARK 465 GLY A 88 REMARK 465 GLY A 89 REMARK 465 ALA A 90 REMARK 465 GLN A 91 REMARK 465 LEU A 92 REMARK 465 PRO A 93 REMARK 465 PRO A 94 REMARK 465 ARG A 95 REMARK 465 VAL A 96 REMARK 465 HIS A 97 REMARK 465 ALA A 98 REMARK 465 LEU A 99 REMARK 465 GLU A 100 REMARK 465 VAL A 101 REMARK 465 LEU A 102 REMARK 465 SER A 629 REMARK 465 ARG A 630 REMARK 465 SER A 631 REMARK 465 ILE A 632 REMARK 465 ARG A 633 REMARK 465 SER A 634 REMARK 465 GLY A 635 REMARK 465 THR C 8 REMARK 465 THR C 9 REMARK 465 THR C 10 REMARK 465 THR C 11 REMARK 465 THR C 12 REMARK 465 THR C 13 REMARK 465 THR C 14 REMARK 465 LYS C 15 REMARK 465 LYS C 16 REMARK 465 PRO C 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 802 O HOH A 818 1.84 REMARK 500 O2B UDP A 701 O HOH A 801 1.95 REMARK 500 OG1 THR C 4 O5 NGA C 101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 278 67.38 -151.05 REMARK 500 CYS A 322 -82.96 -104.57 REMARK 500 LEU A 330 65.87 60.15 REMARK 500 GLN A 349 72.25 -161.12 REMARK 500 ALA A 378 -128.43 53.43 REMARK 500 PHE A 385 -112.58 54.99 REMARK 500 THR A 388 -6.65 78.97 REMARK 500 ASP A 442 -135.48 53.60 REMARK 500 ASP A 552 103.38 -169.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 703 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD2 REMARK 620 2 HIS A 278 NE2 107.1 REMARK 620 3 HIS A 414 NE2 89.3 87.1 REMARK 620 4 UDP A 701 O1A 102.3 82.8 166.4 REMARK 620 5 UDP A 701 PB 105.7 142.5 111.1 72.9 REMARK 620 6 UDP A 701 O1B 71.9 179.0 93.2 97.1 38.2 REMARK 620 7 UDP A 701 O2B 141.7 104.9 112.8 61.7 38.2 75.9 REMARK 620 8 HOH A 801 O 162.6 63.2 76.2 91.1 88.7 117.8 54.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 704 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 333 NE2 REMARK 620 2 GLU A 336 OE1 132.0 REMARK 620 3 GLU A 336 OE2 98.9 61.0 REMARK 620 4 HOH A 802 O 77.6 118.7 62.4 REMARK 620 5 HOH A 817 O 118.3 91.5 142.9 122.7 REMARK 620 6 HOH A 818 O 108.2 116.3 95.4 49.7 73.8 REMARK 620 N 1 2 3 4 5 DBREF1 8UJH A 74 635 UNP A0A125YMZ8_TOXGM DBREF2 8UJH A A0A125YMZ8 74 635 DBREF 8UJH C 1 17 UNP S8EZL1 S8EZL1_TOXGM 2192 2208 SEQADV 8UJH GLY A 73 UNP A0A125YMZ EXPRESSION TAG SEQADV 8UJH SER A 297 UNP A0A125YMZ GLY 297 ENGINEERED MUTATION SEQRES 1 A 563 GLY ALA ARG ASP VAL GLN GLU GLY VAL SER SER PHE GLU SEQRES 2 A 563 GLU SER GLY GLY ALA GLN LEU PRO PRO ARG VAL HIS ALA SEQRES 3 A 563 LEU GLU VAL LEU GLU GLY ALA GLY PRO GLY ARG LEU HIS SEQRES 4 A 563 GLY ARG LEU GLY ILE LYS PRO ASP GLY GLN PRO GLY TYR SEQRES 5 A 563 THR ARG ALA PRO SER PRO PRO THR ASP LEU SER MET PRO SEQRES 6 A 563 GLN ALA LEU ALA ARG GLY GLY GLY PHE ASN LEU TYR LEU SEQRES 7 A 563 SER ASP HIS LEU GLU LEU ASP ARG THR ALA PRO ASP ALA SEQRES 8 A 563 ARG HIS ALA SER CYS ARG GLN LEU HIS TYR ASP LEU SER SEQRES 9 A 563 THR LEU PRO LYS ALA SER VAL ILE ILE VAL PHE TYR ASN SEQRES 10 A 563 GLU PRO PHE SER THR LEU MET ARG SER VAL HIS SER VAL SEQRES 11 A 563 LEU ASN GLY THR PRO PRO GLN ILE LEU GLU GLU LEU ILE SEQRES 12 A 563 LEU VAL ASP ASP GLY SER THR LEU PRO TYR ILE ARG GLU SEQRES 13 A 563 ASP GLY ASN GLN GLN LEU VAL GLU TYR LEU LYS LEU LEU SEQRES 14 A 563 PRO ALA LYS VAL ARG LEU ILE ARG ASN GLU VAL ARG LYS SEQRES 15 A 563 GLY ILE VAL GLY ALA ARG MET LYS GLY ILE ARG ALA SER SEQRES 16 A 563 ARG ALA PRO ILE PHE ALA ILE LEU ASP SER HIS ILE GLU SEQRES 17 A 563 VAL SER PRO GLN TRP LEU GLU PRO LEU LEU LEU ARG ILE SEQRES 18 A 563 LYS GLU ASP SER ARG ARG VAL VAL MET PRO GLN ILE ASP SEQRES 19 A 563 GLY ILE ASP ALA GLU THR PHE LYS HIS ILE ALA GLY GLY SEQRES 20 A 563 ILE GLY CYS LYS LEU GLY PHE LEU TRP LYS LEU MET GLU SEQRES 21 A 563 HIS SER TYR GLU GLY HIS GLN THR ALA ARG LEU PRO PRO SEQRES 22 A 563 GLU GLU ARG GLN PRO SER PRO THR ASP PHE GLN THR SER SEQRES 23 A 563 PRO ALA MET ALA GLY GLY LEU PHE ALA ALA ASN LYS ALA SEQRES 24 A 563 PHE PHE PHE ASP VAL GLY ALA TYR ASP GLU ASP PHE GLN SEQRES 25 A 563 PHE TRP GLY THR GLU ASN LEU GLU LEU SER PHE ARG LEU SEQRES 26 A 563 TRP GLN CYS GLY GLY VAL LEU GLU CYS ALA PRO CYS SER SEQRES 27 A 563 ARG VAL TYR HIS ILE PHE ARG LYS GLY GLY SER GLY TYR SEQRES 28 A 563 SER SER PRO GLY ASP SER ILE THR ILE ASN LYS MET ARG SEQRES 29 A 563 THR MET LEU TRP MET ASP GLU TYR ALA ASP LEU ALA TRP SEQRES 30 A 563 ARG VAL ILE GLY LYS PRO ARG VAL ASN TYR ARG PRO GLU SEQRES 31 A 563 SER LEU GLU LYS ARG ARG GLU TRP ARG LYS ARG LYS GLY SEQRES 32 A 563 CYS LYS SER PHE ARG TRP PHE MET GLU ASN VAL PHE PRO SEQRES 33 A 563 GLU GLY ASP VAL VAL THR LEU ASP ASP VAL PRO TYR LEU SEQRES 34 A 563 GLY PRO LEU ARG ASN ASP LYS ILE GLY MET CYS LEU ASP SEQRES 35 A 563 ASN MET GLY TRP ALA SER PRO GLY HIS ALA VAL GLY LEU SEQRES 36 A 563 GLU TYR CYS HIS GLY GLY ASP THR GLN THR PHE MET PHE SEQRES 37 A 563 PHE ARG LYS VAL GLY HIS VAL MET PRO VAL ASN ASP ASP SEQRES 38 A 563 GLU ALA CYS LEU GLN PRO SER GLY ARG LEU ASP TRP CYS SEQRES 39 A 563 ARG GLY THR ALA GLN PHE TRP TRP ASP PHE THR SER SER SEQRES 40 A 563 GLY GLN LEU MET PHE ARG GLU THR LYS GLN CYS LEU SER SEQRES 41 A 563 ALA PHE GLY ARG LYS LEU ARG MET VAL GLU CYS ASP ASP SEQRES 42 A 563 THR ASP PRO TYR GLN ILE TRP SER TRP THR ALA TYR ASN SEQRES 43 A 563 PRO PRO ASP THR PHE THR PHE PRO SER VAL SER ARG SER SEQRES 44 A 563 ILE ARG SER GLY SEQRES 1 C 17 THR THR THR THR LYS LYS PRO THR THR THR THR THR THR SEQRES 2 C 17 THR LYS LYS PRO HET UDP A 701 36 HET GOL A 702 13 HET MN A 703 1 HET MN A 704 1 HET NGA C 101 28 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 MN 2(MN 2+) FORMUL 7 NGA C8 H15 N O6 FORMUL 8 HOH *19(H2 O) HELIX 1 AA1 SER A 135 GLY A 143 1 9 HELIX 2 AA2 ASN A 147 LEU A 154 1 8 HELIX 3 AA3 HIS A 165 GLN A 170 1 6 HELIX 4 AA4 PRO A 191 THR A 206 1 16 HELIX 5 AA5 PRO A 207 GLN A 209 5 3 HELIX 6 AA6 GLN A 232 LYS A 239 1 8 HELIX 7 AA7 GLY A 255 SER A 267 1 13 HELIX 8 AA8 LEU A 286 ASP A 296 1 11 HELIX 9 AA9 GLU A 336 ALA A 341 1 6 HELIX 10 AB1 ARG A 342 LEU A 343 5 2 HELIX 11 AB2 PRO A 344 ARG A 348 5 5 HELIX 12 AB3 LYS A 370 VAL A 376 1 7 HELIX 13 AB4 THR A 388 CYS A 400 1 13 HELIX 14 AB5 PRO A 426 MET A 438 1 13 HELIX 15 AB6 LEU A 439 GLU A 443 5 5 HELIX 16 AB7 TYR A 444 ILE A 452 1 9 HELIX 17 AB8 ARG A 460 GLY A 475 1 16 HELIX 18 AB9 SER A 478 VAL A 486 1 9 HELIX 19 AC1 THR A 494 VAL A 498 5 5 HELIX 20 AC2 GLY A 533 THR A 535 5 3 HELIX 21 AC3 THR A 569 PHE A 572 5 4 HELIX 22 AC4 ALA A 593 LYS A 597 5 5 HELIX 23 AC5 ASP A 607 ILE A 611 5 5 SHEET 1 AA1 5 VAL A 245 ASN A 250 0 SHEET 2 AA1 5 LEU A 211 ASP A 219 1 N LEU A 216 O ARG A 246 SHEET 3 AA1 5 ALA A 181 PHE A 187 1 N VAL A 183 O ILE A 215 SHEET 4 AA1 5 ILE A 271 LEU A 275 1 O ALA A 273 N ILE A 184 SHEET 5 AA1 5 PHE A 366 ASN A 369 -1 O PHE A 366 N ILE A 274 SHEET 1 AA2 4 ILE A 279 VAL A 281 0 SHEET 2 AA2 4 VAL A 403 ILE A 415 -1 O TYR A 413 N GLU A 280 SHEET 3 AA2 4 ARG A 299 ILE A 308 1 N VAL A 300 O VAL A 403 SHEET 4 AA2 4 HIS A 315 ILE A 316 -1 O ILE A 316 N GLY A 307 SHEET 1 AA3 3 ILE A 279 VAL A 281 0 SHEET 2 AA3 3 VAL A 403 ILE A 415 -1 O TYR A 413 N GLU A 280 SHEET 3 AA3 3 GLN A 356 THR A 357 -1 N GLN A 356 O CYS A 406 SHEET 1 AA4 2 LEU A 324 LEU A 327 0 SHEET 2 AA4 2 MET A 331 SER A 334 -1 O HIS A 333 N GLY A 325 SHEET 1 AA5 5 GLY A 526 GLU A 528 0 SHEET 2 AA5 5 MET A 511 ASP A 514 -1 N CYS A 512 O GLU A 528 SHEET 3 AA5 5 TYR A 500 ASN A 506 -1 N ASN A 506 O MET A 511 SHEET 4 AA5 5 THR A 537 PHE A 541 -1 O PHE A 538 N GLY A 502 SHEET 5 AA5 5 HIS A 546 PRO A 549 -1 O MET A 548 N MET A 539 SHEET 1 AA6 4 GLY A 526 GLU A 528 0 SHEET 2 AA6 4 MET A 511 ASP A 514 -1 N CYS A 512 O GLU A 528 SHEET 3 AA6 4 TYR A 500 ASN A 506 -1 N ASN A 506 O MET A 511 SHEET 4 AA6 4 SER A 613 ALA A 616 -1 O SER A 613 N ARG A 505 SHEET 1 AA7 2 ALA A 555 LEU A 557 0 SHEET 2 AA7 2 LEU A 563 TRP A 565 -1 O ASP A 564 N CYS A 556 SHEET 1 AA8 4 TRP A 574 PHE A 576 0 SHEET 2 AA8 4 LEU A 582 PHE A 584 -1 O MET A 583 N ASP A 575 SHEET 3 AA8 4 GLN A 589 SER A 592 -1 O GLN A 589 N PHE A 584 SHEET 4 AA8 4 ARG A 599 GLU A 602 -1 O VAL A 601 N CYS A 590 SSBOND 1 CYS A 168 CYS A 409 1555 1555 2.03 SSBOND 2 CYS A 322 CYS A 406 1555 1555 2.04 SSBOND 3 CYS A 400 CYS A 476 1555 1555 2.03 SSBOND 4 CYS A 512 CYS A 530 1555 1555 2.04 SSBOND 5 CYS A 556 CYS A 566 1555 1555 2.03 SSBOND 6 CYS A 590 CYS A 603 1555 1555 2.04 LINK OG1 THR C 4 C1 NGA C 101 1555 1555 1.45 LINK OD2 ASP A 276 MN MN A 703 1555 1555 2.03 LINK NE2 HIS A 278 MN MN A 703 1555 1555 2.24 LINK NE2 HIS A 333 MN MN A 704 1555 1555 2.28 LINK OE1 GLU A 336 MN MN A 704 1555 1555 2.19 LINK OE2 GLU A 336 MN MN A 704 1555 1555 2.14 LINK NE2 HIS A 414 MN MN A 703 1555 1555 2.25 LINK O1A UDP A 701 MN MN A 703 1555 1555 2.63 LINK PB UDP A 701 MN MN A 703 1555 1555 2.47 LINK O1B UDP A 701 MN MN A 703 1555 1555 2.01 LINK O2B UDP A 701 MN MN A 703 1555 1555 2.02 LINK MN MN A 703 O HOH A 801 1555 1555 2.19 LINK MN MN A 704 O HOH A 802 1555 1555 2.19 LINK MN MN A 704 O HOH A 817 1555 1555 2.18 LINK MN MN A 704 O HOH A 818 1555 1555 2.18 CRYST1 61.722 66.833 166.047 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016202 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006022 0.00000