HEADER TRANSCRIPTION 11-OCT-23 8UJY TITLE CRYSTAL STRUCTURE OF HUMAN WD REPEAT-CONTAINING PROTEIN 5 IN COMPLEX TITLE 2 WITH 4-(3,5-DIMETHOXYBENZYL)-9-(4-FLUORO-2-METHYLPHENYL)-7-((2-IMINO- TITLE 3 3-METHYL-2,3-DIHYDRO-1H-IMIDAZOL-1-YL)METHYL)-3,4-DIHYDROBENZO[F][1, TITLE 4 4]OXAZEPIN-5(2H)-ONE (COMPOUND 8) COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 23-334; COMPND 5 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WDR5, CANCER, DRUG DISCOVERY, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHAO,K.AMPORNDANAI,S.W.FESIK REVDAT 3 10-JAN-24 8UJY 1 JRNL REVDAT 2 27-DEC-23 8UJY 1 JRNL REVDAT 1 20-DEC-23 8UJY 0 JRNL AUTH K.B.TEUSCHER,J.J.MILLS,J.TIAN,C.HAN,K.M.MEYERS,J.SAI, JRNL AUTH 2 T.M.SOUTH,M.M.CROW,M.VAN MEVEREN,J.L.SENSINTAFFAR,B.ZHAO, JRNL AUTH 3 K.AMPORNDANAI,W.J.MOORE,G.M.STOTT,W.P.TANSEY,T.LEE,S.W.FESIK JRNL TITL STRUCTURE-BASED DISCOVERY OF POTENT, ORALLY BIOAVAILABLE JRNL TITL 2 BENZOXAZEPINONE-BASED WD REPEAT DOMAIN 5 INHIBITORS. JRNL REF J.MED.CHEM. V. 66 16783 2023 JRNL REFN ISSN 0022-2623 JRNL PMID 38085679 JRNL DOI 10.1021/ACS.JMEDCHEM.3C01529 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 34545 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.962 REMARK 3 FREE R VALUE TEST SET COUNT : 1714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2565 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 144 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4658 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.91300 REMARK 3 B22 (A**2) : 2.28000 REMARK 3 B33 (A**2) : -1.87000 REMARK 3 B12 (A**2) : -0.30200 REMARK 3 B13 (A**2) : 0.30600 REMARK 3 B23 (A**2) : -0.02400 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.263 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.735 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4856 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4431 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6615 ; 1.532 ; 1.785 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10237 ; 0.526 ; 1.751 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 607 ; 8.222 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 23 ;37.079 ;14.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 757 ;12.805 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 741 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5648 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1060 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 852 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 54 ; 0.212 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2332 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 429 ; 0.237 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2439 ; 2.473 ; 2.370 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2440 ; 2.473 ; 2.372 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3042 ; 3.790 ; 4.238 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3043 ; 3.790 ; 4.240 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2417 ; 2.510 ; 2.624 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2418 ; 2.510 ; 2.625 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3573 ; 3.872 ; 4.737 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3574 ; 3.871 ; 4.738 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 32 A 333 NULL REMARK 3 1 A 32 A 333 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8UJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 28.658 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 7.0, 0.2 M AMMONIUM REMARK 280 ACETATE, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 211 REMARK 465 ASP A 212 REMARK 465 GLY B 23 REMARK 465 THR B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 PRO B 28 REMARK 465 THR B 29 REMARK 465 PRO B 30 REMARK 465 VAL B 31 REMARK 465 ASP B 211 REMARK 465 ASP B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 87 CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ARG A 181 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 207 CE NZ REMARK 470 ILE A 210 CG1 CG2 CD1 REMARK 470 LYS A 239 CE NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 LYS B 87 CE NZ REMARK 470 LYS B 109 NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 LYS B 207 CE NZ REMARK 470 ILE B 210 CG1 CG2 CD1 REMARK 470 LYS B 227 CG CD CE NZ REMARK 470 LYS B 239 CE NZ REMARK 470 LYS B 245 CD CE NZ REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 CYS B 334 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER B 97 HG SER B 141 1.15 REMARK 500 H SER A 97 HG SER A 141 1.25 REMARK 500 HD1 HIS A 178 H PHE A 222 1.33 REMARK 500 HH12 ARG A 154 HG CYS A 163 1.34 REMARK 500 HD1 HIS B 178 H PHE B 222 1.34 REMARK 500 H LYS B 159 O HOH B 508 1.53 REMARK 500 H CYS B 309 O HOH B 515 1.59 REMARK 500 O HOH A 684 O HOH A 747 1.74 REMARK 500 O HOH A 595 O HOH A 703 1.90 REMARK 500 O HOH A 729 O HOH A 755 1.90 REMARK 500 O HOH A 603 O HOH A 672 2.01 REMARK 500 O HOH A 540 O HOH A 658 2.02 REMARK 500 O HOH B 665 O HOH B 706 2.03 REMARK 500 O HOH A 715 O HOH A 723 2.04 REMARK 500 O HOH A 703 O HOH A 756 2.06 REMARK 500 O HOH A 677 O HOH A 707 2.08 REMARK 500 O HOH B 601 O HOH B 662 2.08 REMARK 500 O HOH A 521 O HOH A 666 2.10 REMARK 500 O HOH A 516 O HOH A 711 2.10 REMARK 500 O HOH A 648 O HOH A 738 2.13 REMARK 500 O HOH B 580 O HOH B 666 2.13 REMARK 500 O HOH B 686 O HOH B 687 2.14 REMARK 500 O THR B 200 O HOH B 501 2.19 REMARK 500 O HOH A 594 O HOH A 694 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 767 O HOH A 768 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 67 10.58 83.66 REMARK 500 LYS A 109 4.94 83.11 REMARK 500 GLU A 151 5.80 85.58 REMARK 500 ASN A 214 79.55 -166.29 REMARK 500 LEU A 234 39.32 -80.77 REMARK 500 LYS A 259 -46.93 -131.19 REMARK 500 LYS A 291 9.70 82.50 REMARK 500 LYS B 67 11.34 81.37 REMARK 500 LYS B 109 6.64 80.81 REMARK 500 GLU B 151 4.38 86.54 REMARK 500 ASN B 214 80.66 -159.07 REMARK 500 LEU B 234 41.15 -85.04 REMARK 500 LYS B 259 -46.51 -130.58 REMARK 500 ASN B 281 14.72 82.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 181 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 766 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 767 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH A 768 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH B 710 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B 711 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH B 712 DISTANCE = 7.01 ANGSTROMS DBREF 8UJY A 24 334 UNP P61964 WDR5_HUMAN 24 334 DBREF 8UJY B 24 334 UNP P61964 WDR5_HUMAN 24 334 SEQADV 8UJY GLY A 23 UNP P61964 EXPRESSION TAG SEQADV 8UJY GLY B 23 UNP P61964 EXPRESSION TAG SEQRES 1 A 312 GLY THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN TYR SEQRES 2 A 312 ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA VAL SEQRES 3 A 312 SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU ALA SEQRES 4 A 312 SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY ALA SEQRES 5 A 312 TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS LYS SEQRES 6 A 312 LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER ASN SEQRES 7 A 312 LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS ILE SEQRES 8 A 312 TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU LYS SEQRES 9 A 312 GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN PRO SEQRES 10 A 312 GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SER SEQRES 11 A 312 VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU LYS SEQRES 12 A 312 THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL HIS SEQRES 13 A 312 PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER TYR SEQRES 14 A 312 ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY GLN SEQRES 15 A 312 CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO VAL SEQRES 16 A 312 SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE LEU SEQRES 17 A 312 ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP TYR SEQRES 18 A 312 SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS LYS SEQRES 19 A 312 ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL THR SEQRES 20 A 312 GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN LEU SEQRES 21 A 312 VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL GLN SEQRES 22 A 312 LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR ALA SEQRES 23 A 312 CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA LEU SEQRES 24 A 312 GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP CYS SEQRES 1 B 312 GLY THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN TYR SEQRES 2 B 312 ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA VAL SEQRES 3 B 312 SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU ALA SEQRES 4 B 312 SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY ALA SEQRES 5 B 312 TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS LYS SEQRES 6 B 312 LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER ASN SEQRES 7 B 312 LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS ILE SEQRES 8 B 312 TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU LYS SEQRES 9 B 312 GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN PRO SEQRES 10 B 312 GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SER SEQRES 11 B 312 VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU LYS SEQRES 12 B 312 THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL HIS SEQRES 13 B 312 PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER TYR SEQRES 14 B 312 ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY GLN SEQRES 15 B 312 CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO VAL SEQRES 16 B 312 SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE LEU SEQRES 17 B 312 ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP TYR SEQRES 18 B 312 SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS LYS SEQRES 19 B 312 ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL THR SEQRES 20 B 312 GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN LEU SEQRES 21 B 312 VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL GLN SEQRES 22 B 312 LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR ALA SEQRES 23 B 312 CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA LEU SEQRES 24 B 312 GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP CYS HET VV3 A 401 70 HET VV3 B 401 70 HETNAM VV3 (9P)-4-[(3,5-DIMETHOXYPHENYL)METHYL]-9-(4-FLUORO-2- HETNAM 2 VV3 METHYLPHENYL)-7-{[(2E)-2-IMINO-3-METHYL-2,3-DIHYDRO- HETNAM 3 VV3 1H-IMIDAZOL-1-YL]METHYL}-3,4-DIHYDRO-1,4-BENZOXAZEPIN- HETNAM 4 VV3 5(2H)-ONE FORMUL 3 VV3 2(C30 H31 F N4 O4) FORMUL 5 HOH *480(H2 O) SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52 SHEET 3 AA2 4 LEU A 68 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 SER A 84 -1 O ILE A 83 N ILE A 69 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 AA3 4 LEU A 111 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LEU A 125 -1 O LEU A 125 N LEU A 111 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 206 N ILE A 197 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LEU A 249 N LEU A 240 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O VAL A 275 N ASN A 265 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285 SHEET 1 AA8 4 ALA B 36 LEU B 41 0 SHEET 2 AA8 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41 SHEET 3 AA8 4 ILE B 315 ALA B 320 -1 N ILE B 316 O TRP B 330 SHEET 4 AA8 4 VAL B 304 CYS B 309 -1 N ALA B 308 O ALA B 317 SHEET 1 AA9 4 VAL B 48 PHE B 53 0 SHEET 2 AA9 4 TRP B 59 SER B 64 -1 O ALA B 61 N LYS B 52 SHEET 3 AA9 4 LEU B 68 GLY B 73 -1 O TRP B 72 N LEU B 60 SHEET 4 AA9 4 PHE B 79 SER B 84 -1 O ILE B 83 N ILE B 69 SHEET 1 AB1 4 ILE B 90 TRP B 95 0 SHEET 2 AB1 4 LEU B 101 SER B 106 -1 O VAL B 103 N ALA B 94 SHEET 3 AB1 4 LEU B 111 ASP B 115 -1 O TRP B 114 N LEU B 102 SHEET 4 AB1 4 CYS B 121 LEU B 125 -1 O LEU B 125 N LEU B 111 SHEET 1 AB2 4 VAL B 132 PHE B 137 0 SHEET 2 AB2 4 LEU B 143 SER B 148 -1 O VAL B 145 N ASN B 136 SHEET 3 AB2 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144 SHEET 4 AB2 4 CYS B 163 LEU B 167 -1 O LEU B 167 N VAL B 153 SHEET 1 AB3 4 VAL B 174 PHE B 179 0 SHEET 2 AB3 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178 SHEET 3 AB3 4 CYS B 195 ASP B 199 -1 O TRP B 198 N ILE B 186 SHEET 4 AB3 4 CYS B 205 LEU B 209 -1 O LEU B 206 N ILE B 197 SHEET 1 AB4 4 VAL B 217 PHE B 222 0 SHEET 2 AB4 4 TYR B 228 THR B 233 -1 O LEU B 230 N LYS B 221 SHEET 3 AB4 4 THR B 237 ASP B 242 -1 O TRP B 241 N ILE B 229 SHEET 4 AB4 4 LYS B 247 TYR B 252 -1 O LEU B 249 N LEU B 240 SHEET 1 AB5 4 ALA B 264 SER B 267 0 SHEET 2 AB5 4 TRP B 273 SER B 276 -1 O VAL B 275 N ASN B 265 SHEET 3 AB5 4 VAL B 283 ASN B 287 -1 O TYR B 284 N SER B 276 SHEET 4 AB5 4 ILE B 293 LEU B 297 -1 O LEU B 297 N VAL B 283 CRYST1 46.810 47.680 68.869 88.04 89.27 74.66 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021363 -0.005860 -0.000085 0.00000 SCALE2 0.000000 0.021748 -0.000696 0.00000 SCALE3 0.000000 0.000000 0.014529 0.00000