data_8UKG # _entry.id 8UKG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.396 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8UKG pdb_00008ukg 10.2210/pdb8ukg/pdb WWPDB D_1000278088 ? ? BMRB 31110 ? 10.13018/BMR31110 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-09-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8UKG _pdbx_database_status.recvd_initial_deposition_date 2023-10-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR structure of the lasso peptide wygwalassin-A1' _pdbx_database_related.db_id 31110 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email douglasm@illinois.edu _pdbx_contact_author.name_first Doug _pdbx_contact_author.name_last Mitchell _pdbx_contact_author.name_mi A _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-9564-0953 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Saad, H.' 1 0000-0002-4387-0474 'Zhu, L.' 2 0000-0002-6657-271X 'Harris, L.A.' 3 0000-0002-0312-8806 'Shelton, K.E.' 4 0000-0002-9887-929X 'Mitchell, D.A.' 5 0000-0002-9564-0953 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 0006-2960 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 63 _citation.language ? _citation.page_first 865 _citation.page_last 879 _citation.title 'Tryptophan-Centric Bioinformatics Identifies New Lasso Peptide Modifications.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.4c00035 _citation.pdbx_database_id_PubMed 38498885 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Harris, L.A.' 1 ? primary 'Saad, H.' 2 ? primary 'Shelton, K.E.' 3 ? primary 'Zhu, L.' 4 0000-0002-6657-271X primary 'Guo, X.' 5 ? primary 'Mitchell, D.A.' 6 0000-0002-9564-0953 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Lassopeptide wygwalassin-A1' _entity.formula_weight 1705.822 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'W(PQ4)G(WWB)ASNDGEGTAII' _entity_poly.pdbx_seq_one_letter_code_can WXGXASNDGEGTAII _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 PQ4 n 1 3 GLY n 1 4 WWB n 1 5 ALA n 1 6 SER n 1 7 ASN n 1 8 ASP n 1 9 GLY n 1 10 GLU n 1 11 GLY n 1 12 THR n 1 13 ALA n 1 14 ILE n 1 15 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 15 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces katrae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 68223 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Streptomyces katrae' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 68223 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 PQ4 'peptide linking' . '(2Z)-2-amino-3-(4-hydroxyphenyl)prop-2-enoic acid' ? 'C9 H9 N O3' 179.173 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 WWB 'L-peptide linking' n '5-(3-methylbut-2-en-1-yl)-L-tryptophan' ? 'C16 H20 N2 O2' 272.342 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 1 1 TRP TRP A . n A 1 2 PQ4 2 2 2 PQ4 DHY A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 WWB 4 4 4 WWB PRW A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 ILE 15 15 15 ILE ILE A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8UKG _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8UKG _struct.title 'Solution NMR structure of the lasso peptide wygwalassin-A1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8UKG _struct_keywords.text 'Lassopeptide, UNKNOWN FUNCTION' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8UKG _struct_ref.pdbx_db_accession 8UKG _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8UKG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 15 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8UKG _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 15 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TRP 1 C ? ? ? 1_555 A PQ4 2 N ? ? A TRP 1 A PQ4 2 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale one ? A TRP 1 N ? ? ? 1_555 A ASP 8 CG ? ? A TRP 1 A ASP 8 1_555 ? ? ? ? ? ? ? 1.322 sing ? covale3 covale both ? A PQ4 2 C ? ? ? 1_555 A GLY 3 N ? ? A PQ4 2 A GLY 3 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A GLY 3 C ? ? ? 1_555 A WWB 4 N ? ? A GLY 3 A WWB 4 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A WWB 4 C ? ? ? 1_555 A ALA 5 N ? ? A WWB 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 8UKG _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 WWB A 4 ? ? -143.81 43.26 2 1 ALA A 5 ? ? -163.56 -109.00 3 2 ALA A 5 ? ? -152.54 -114.21 4 3 WWB A 4 ? ? -146.80 46.16 5 3 ALA A 5 ? ? -168.57 -104.52 6 4 WWB A 4 ? ? -145.37 45.09 7 4 ALA A 5 ? ? -169.74 -99.96 8 5 WWB A 4 ? ? -145.96 44.10 9 5 ALA A 5 ? ? -161.76 -106.16 10 6 ALA A 5 ? ? 174.96 -166.26 11 6 SER A 6 ? ? 35.10 -164.89 12 7 WWB A 4 ? ? -150.71 46.04 13 7 ALA A 5 ? ? -163.94 -105.28 14 8 SER A 6 ? ? 36.74 -166.24 15 9 SER A 6 ? ? 87.65 -168.40 16 9 GLU A 10 ? ? -136.21 -51.91 17 10 SER A 6 ? ? 35.93 -164.15 18 11 WWB A 4 ? ? -146.76 46.21 19 11 ALA A 5 ? ? -169.10 -109.09 20 12 ALA A 5 ? ? -173.94 -154.10 21 12 SER A 6 ? ? 37.26 -166.63 22 13 ALA A 5 ? ? -173.33 -176.86 23 13 SER A 6 ? ? 44.08 178.57 24 14 ALA A 5 ? ? -177.98 -178.73 25 14 SER A 6 ? ? 37.47 -168.77 26 15 WWB A 4 ? ? -150.91 48.35 27 15 ALA A 5 ? ? -164.26 -102.10 28 16 ALA A 5 ? ? 179.70 177.19 29 16 SER A 6 ? ? 36.96 -167.15 30 17 SER A 6 ? ? 36.86 -165.68 31 18 ALA A 5 ? ? -162.48 -168.53 32 18 SER A 6 ? ? 37.07 -167.57 33 19 ALA A 5 ? ? 178.60 -158.78 34 19 SER A 6 ? ? 36.04 -165.13 35 20 WWB A 4 ? ? -146.21 42.31 36 20 ALA A 5 ? ? -165.36 -98.60 # _pdbx_nmr_ensemble.entry_id 8UKG _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8UKG _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria medoid # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.2 mM lassopeptide, 100% CD3OH' _pdbx_nmr_sample_details.solvent_system '100% CD3OH' _pdbx_nmr_sample_details.label wygwalassin-A1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details '0.2mM sample in CD3OH' # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component lassopeptide _pdbx_nmr_exptl_sample.concentration 0.2 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.15 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err 0.5 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D TOCSY' 1 isotropic 2 1 1 '2D NOESY' 1 isotropic 3 1 1 '2D HSQC' 2 isotropic # _pdbx_nmr_refine.entry_id 8UKG _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 2 'structure calculation' 'X-PLOR NIH' 2.51 'Schwieters, Kuszewski, Tjandra and Clore' 5 collection VnmrJ 4.2A Agilent 6 collection TopSpin 4.1.4 'Bruker Biospin' 1 'chemical shift assignment' 'MestreLab (Mnova / MestReNova / MestReC)' 14.3.0 'Mestrelab Research S.L.' 3 'peak picking' Sparky ? Goddard 4 refinement 'X-PLOR NIH' 2.51 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLU N N N N 47 GLU CA C N S 48 GLU C C N N 49 GLU O O N N 50 GLU CB C N N 51 GLU CG C N N 52 GLU CD C N N 53 GLU OE1 O N N 54 GLU OE2 O N N 55 GLU OXT O N N 56 GLU H H N N 57 GLU H2 H N N 58 GLU HA H N N 59 GLU HB2 H N N 60 GLU HB3 H N N 61 GLU HG2 H N N 62 GLU HG3 H N N 63 GLU HE2 H N N 64 GLU HXT H N N 65 GLY N N N N 66 GLY CA C N N 67 GLY C C N N 68 GLY O O N N 69 GLY OXT O N N 70 GLY H H N N 71 GLY H2 H N N 72 GLY HA2 H N N 73 GLY HA3 H N N 74 GLY HXT H N N 75 ILE N N N N 76 ILE CA C N S 77 ILE C C N N 78 ILE O O N N 79 ILE CB C N S 80 ILE CG1 C N N 81 ILE CG2 C N N 82 ILE CD1 C N N 83 ILE OXT O N N 84 ILE H H N N 85 ILE H2 H N N 86 ILE HA H N N 87 ILE HB H N N 88 ILE HG12 H N N 89 ILE HG13 H N N 90 ILE HG21 H N N 91 ILE HG22 H N N 92 ILE HG23 H N N 93 ILE HD11 H N N 94 ILE HD12 H N N 95 ILE HD13 H N N 96 ILE HXT H N N 97 PQ4 N N N N 98 PQ4 CA C N N 99 PQ4 CB C N N 100 PQ4 CG C Y N 101 PQ4 CD1 C Y N 102 PQ4 CE1 C Y N 103 PQ4 CZ C Y N 104 PQ4 OH O N N 105 PQ4 CE2 C Y N 106 PQ4 CD2 C Y N 107 PQ4 C C N N 108 PQ4 O O N N 109 PQ4 OXT O N N 110 PQ4 H H N N 111 PQ4 H2 H N N 112 PQ4 HB2 H N N 113 PQ4 HD1 H N N 114 PQ4 HE1 H N N 115 PQ4 HH H N N 116 PQ4 HE2 H N N 117 PQ4 HD2 H N N 118 PQ4 HXT H N N 119 SER N N N N 120 SER CA C N S 121 SER C C N N 122 SER O O N N 123 SER CB C N N 124 SER OG O N N 125 SER OXT O N N 126 SER H H N N 127 SER H2 H N N 128 SER HA H N N 129 SER HB2 H N N 130 SER HB3 H N N 131 SER HG H N N 132 SER HXT H N N 133 THR N N N N 134 THR CA C N S 135 THR C C N N 136 THR O O N N 137 THR CB C N R 138 THR OG1 O N N 139 THR CG2 C N N 140 THR OXT O N N 141 THR H H N N 142 THR H2 H N N 143 THR HA H N N 144 THR HB H N N 145 THR HG1 H N N 146 THR HG21 H N N 147 THR HG22 H N N 148 THR HG23 H N N 149 THR HXT H N N 150 TRP N N N N 151 TRP CA C N S 152 TRP C C N N 153 TRP O O N N 154 TRP CB C N N 155 TRP CG C Y N 156 TRP CD1 C Y N 157 TRP CD2 C Y N 158 TRP NE1 N Y N 159 TRP CE2 C Y N 160 TRP CE3 C Y N 161 TRP CZ2 C Y N 162 TRP CZ3 C Y N 163 TRP CH2 C Y N 164 TRP OXT O N N 165 TRP H H N N 166 TRP H2 H N N 167 TRP HA H N N 168 TRP HB2 H N N 169 TRP HB3 H N N 170 TRP HD1 H N N 171 TRP HE1 H N N 172 TRP HE3 H N N 173 TRP HZ2 H N N 174 TRP HZ3 H N N 175 TRP HH2 H N N 176 TRP HXT H N N 177 WWB N N N N 178 WWB CA C N S 179 WWB C C N N 180 WWB O O N N 181 WWB CB C N N 182 WWB CG C Y N 183 WWB CD1 C Y N 184 WWB CD2 C Y N 185 WWB CE2 C Y N 186 WWB CE3 C Y N 187 WWB NE1 N Y N 188 WWB CZ2 C Y N 189 WWB CZ3 C Y N 190 WWB CH2 C Y N 191 WWB CP1 C N N 192 WWB CP2 C N N 193 WWB CP3 C N N 194 WWB CP4 C N N 195 WWB CP5 C N N 196 WWB OXT O N N 197 WWB H H N N 198 WWB H2 H N N 199 WWB HA H N N 200 WWB HB3 H N N 201 WWB HB2 H N N 202 WWB HD1 H N N 203 WWB HE3 H N N 204 WWB HE1 H N N 205 WWB HZ2 H N N 206 WWB HH2 H N N 207 WWB HP11 H N N 208 WWB HP12 H N N 209 WWB HP2 H N N 210 WWB HP41 H N N 211 WWB HP42 H N N 212 WWB HP43 H N N 213 WWB HP52 H N N 214 WWB HP53 H N N 215 WWB HP51 H N N 216 WWB HXT H N N 217 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLU N CA sing N N 44 GLU N H sing N N 45 GLU N H2 sing N N 46 GLU CA C sing N N 47 GLU CA CB sing N N 48 GLU CA HA sing N N 49 GLU C O doub N N 50 GLU C OXT sing N N 51 GLU CB CG sing N N 52 GLU CB HB2 sing N N 53 GLU CB HB3 sing N N 54 GLU CG CD sing N N 55 GLU CG HG2 sing N N 56 GLU CG HG3 sing N N 57 GLU CD OE1 doub N N 58 GLU CD OE2 sing N N 59 GLU OE2 HE2 sing N N 60 GLU OXT HXT sing N N 61 GLY N CA sing N N 62 GLY N H sing N N 63 GLY N H2 sing N N 64 GLY CA C sing N N 65 GLY CA HA2 sing N N 66 GLY CA HA3 sing N N 67 GLY C O doub N N 68 GLY C OXT sing N N 69 GLY OXT HXT sing N N 70 ILE N CA sing N N 71 ILE N H sing N N 72 ILE N H2 sing N N 73 ILE CA C sing N N 74 ILE CA CB sing N N 75 ILE CA HA sing N N 76 ILE C O doub N N 77 ILE C OXT sing N N 78 ILE CB CG1 sing N N 79 ILE CB CG2 sing N N 80 ILE CB HB sing N N 81 ILE CG1 CD1 sing N N 82 ILE CG1 HG12 sing N N 83 ILE CG1 HG13 sing N N 84 ILE CG2 HG21 sing N N 85 ILE CG2 HG22 sing N N 86 ILE CG2 HG23 sing N N 87 ILE CD1 HD11 sing N N 88 ILE CD1 HD12 sing N N 89 ILE CD1 HD13 sing N N 90 ILE OXT HXT sing N N 91 PQ4 O C doub N N 92 PQ4 C CA sing N N 93 PQ4 CD2 CE2 doub Y N 94 PQ4 CD2 CG sing Y N 95 PQ4 CA CB doub N Z 96 PQ4 CA N sing N N 97 PQ4 CB CG sing N N 98 PQ4 CE2 CZ sing Y N 99 PQ4 CG CD1 doub Y N 100 PQ4 CZ OH sing N N 101 PQ4 CZ CE1 doub Y N 102 PQ4 CD1 CE1 sing Y N 103 PQ4 C OXT sing N N 104 PQ4 N H sing N N 105 PQ4 N H2 sing N N 106 PQ4 CB HB2 sing N N 107 PQ4 CD1 HD1 sing N N 108 PQ4 CE1 HE1 sing N N 109 PQ4 OH HH sing N N 110 PQ4 CE2 HE2 sing N N 111 PQ4 CD2 HD2 sing N N 112 PQ4 OXT HXT sing N N 113 SER N CA sing N N 114 SER N H sing N N 115 SER N H2 sing N N 116 SER CA C sing N N 117 SER CA CB sing N N 118 SER CA HA sing N N 119 SER C O doub N N 120 SER C OXT sing N N 121 SER CB OG sing N N 122 SER CB HB2 sing N N 123 SER CB HB3 sing N N 124 SER OG HG sing N N 125 SER OXT HXT sing N N 126 THR N CA sing N N 127 THR N H sing N N 128 THR N H2 sing N N 129 THR CA C sing N N 130 THR CA CB sing N N 131 THR CA HA sing N N 132 THR C O doub N N 133 THR C OXT sing N N 134 THR CB OG1 sing N N 135 THR CB CG2 sing N N 136 THR CB HB sing N N 137 THR OG1 HG1 sing N N 138 THR CG2 HG21 sing N N 139 THR CG2 HG22 sing N N 140 THR CG2 HG23 sing N N 141 THR OXT HXT sing N N 142 TRP N CA sing N N 143 TRP N H sing N N 144 TRP N H2 sing N N 145 TRP CA C sing N N 146 TRP CA CB sing N N 147 TRP CA HA sing N N 148 TRP C O doub N N 149 TRP C OXT sing N N 150 TRP CB CG sing N N 151 TRP CB HB2 sing N N 152 TRP CB HB3 sing N N 153 TRP CG CD1 doub Y N 154 TRP CG CD2 sing Y N 155 TRP CD1 NE1 sing Y N 156 TRP CD1 HD1 sing N N 157 TRP CD2 CE2 doub Y N 158 TRP CD2 CE3 sing Y N 159 TRP NE1 CE2 sing Y N 160 TRP NE1 HE1 sing N N 161 TRP CE2 CZ2 sing Y N 162 TRP CE3 CZ3 doub Y N 163 TRP CE3 HE3 sing N N 164 TRP CZ2 CH2 doub Y N 165 TRP CZ2 HZ2 sing N N 166 TRP CZ3 CH2 sing Y N 167 TRP CZ3 HZ3 sing N N 168 TRP CH2 HH2 sing N N 169 TRP OXT HXT sing N N 170 WWB NE1 CD1 sing Y N 171 WWB NE1 CE2 sing Y N 172 WWB CZ2 CE2 doub Y N 173 WWB CZ2 CH2 sing Y N 174 WWB CD1 CG doub Y N 175 WWB CE2 CD2 sing Y N 176 WWB O C doub N N 177 WWB CH2 CZ3 doub Y N 178 WWB C CA sing N N 179 WWB CG CD2 sing Y N 180 WWB CG CB sing N N 181 WWB CD2 CE3 doub Y N 182 WWB CZ3 CE3 sing Y N 183 WWB CZ3 CP1 sing N N 184 WWB CA N sing N N 185 WWB CA CB sing N N 186 WWB CP5 CP3 sing N N 187 WWB CP1 CP2 sing N N 188 WWB CP3 CP4 sing N N 189 WWB CP3 CP2 doub N N 190 WWB C OXT sing N N 191 WWB N H sing N N 192 WWB N H2 sing N N 193 WWB CA HA sing N N 194 WWB CB HB3 sing N N 195 WWB CB HB2 sing N N 196 WWB CD1 HD1 sing N N 197 WWB CE3 HE3 sing N N 198 WWB NE1 HE1 sing N N 199 WWB CZ2 HZ2 sing N N 200 WWB CH2 HH2 sing N N 201 WWB CP1 HP11 sing N N 202 WWB CP1 HP12 sing N N 203 WWB CP2 HP2 sing N N 204 WWB CP4 HP41 sing N N 205 WWB CP4 HP42 sing N N 206 WWB CP4 HP43 sing N N 207 WWB CP5 HP52 sing N N 208 WWB CP5 HP53 sing N N 209 WWB CP5 HP51 sing N N 210 WWB OXT HXT sing N N 211 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM123998 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 VNMRS ? Varian 750 ? 2 'Avance II NEO' ? Bruker 600 ? # _atom_sites.entry_id 8UKG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_