HEADER TRANSFERASE 15-OCT-23 8UKW TITLE CRYSTAL STRUCTURE THE EXTRACELLULAR REGION OF THE EPIDERMAL GROWTH TITLE 2 FACTOR RECEPTOR VARIANT III (EGFRVIII) AT PH 5.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-ERBB-1,RECEPTOR TYROSINE-PROTEIN KINASE COMPND 5 ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: VAR_066493; SOURCE 6 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 10 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS CELL SURFACE RECEPTOR, GLYCOPROTEIN, EXTRACELLULAR, GLIOBLASTOMA, KEYWDS 2 ONCOGENIC VARIANT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.STAYROOK,K.M.FERGUSON REVDAT 2 03-JUL-24 8UKW 1 JRNL REVDAT 1 12-JUN-24 8UKW 0 JRNL AUTH A.BAGCHI,S.E.STAYROOK,K.T.XENAKI,C.A.STARBIRD,S.DOULKERIDOU, JRNL AUTH 2 R.EL KHOULATI,R.C.ROOVERS,K.R.SCHMITZ, JRNL AUTH 3 P.M.P.VAN BERGEN EN HENEGOUWEN,K.M.FERGUSON JRNL TITL STRUCTURAL INSIGHTS INTO THE ROLE AND TARGETING OF EGFRVIII. JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38908376 JRNL DOI 10.1016/J.STR.2024.05.018 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 33198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3300 - 5.3100 0.97 2860 167 0.2011 0.2002 REMARK 3 2 5.3100 - 4.2200 0.97 2846 146 0.1633 0.1915 REMARK 3 3 4.2200 - 3.6900 0.98 2870 130 0.1817 0.2209 REMARK 3 4 3.6900 - 3.3500 0.99 2894 132 0.2122 0.2422 REMARK 3 5 3.3500 - 3.1100 1.00 2883 148 0.2305 0.2579 REMARK 3 6 3.1100 - 2.9300 1.00 2903 137 0.2662 0.3382 REMARK 3 7 2.9300 - 2.7800 1.00 2890 139 0.2681 0.3078 REMARK 3 8 2.7800 - 2.6600 1.00 2852 151 0.2711 0.3070 REMARK 3 9 2.6600 - 2.5600 1.00 2850 157 0.2753 0.3474 REMARK 3 10 2.5600 - 2.4700 1.00 2889 143 0.2929 0.3375 REMARK 3 11 2.4700 - 2.3900 1.00 2863 148 0.3300 0.3767 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4857 REMARK 3 ANGLE : 0.812 6599 REMARK 3 CHIRALITY : 0.057 771 REMARK 3 PLANARITY : 0.006 857 REMARK 3 DIHEDRAL : 6.195 721 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278187. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 300 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33254 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 48.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.70500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7 MG/ML PROTEIN, 27.5% PEG 3350, 50 MM REMARK 280 NA CITRATE PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.14700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 268 REMARK 465 GLU A 269 REMARK 465 GLU A 270 REMARK 465 LYS A 271 REMARK 465 LYS A 272 REMARK 465 GLY A 273 REMARK 465 ASN A 274 REMARK 465 TYR A 275 REMARK 465 VAL A 276 REMARK 465 VAL A 277 REMARK 465 THR A 278 REMARK 465 ASP A 279 REMARK 465 HIS A 280 REMARK 465 GLY A 281 REMARK 465 SER A 282 REMARK 465 SER A 283 REMARK 465 VAL A 284 REMARK 465 ARG A 285 REMARK 465 ALA A 286 REMARK 465 CYS A 287 REMARK 465 GLY A 288 REMARK 465 ALA A 289 REMARK 465 ASP A 290 REMARK 465 SER A 291 REMARK 465 TYR A 292 REMARK 465 GLU A 293 REMARK 465 MET A 294 REMARK 465 GLU A 295 REMARK 465 GLU A 296 REMARK 465 ASP A 297 REMARK 465 GLY A 298 REMARK 465 VAL A 299 REMARK 465 ARG A 300 REMARK 465 LYS A 301 REMARK 465 CYS A 302 REMARK 465 LYS A 303 REMARK 465 LYS A 304 REMARK 465 THR A 614 REMARK 465 ASN A 615 REMARK 465 GLY A 616 REMARK 465 PRO A 617 REMARK 465 LYS A 618 REMARK 465 HIS A 619 REMARK 465 HIS A 620 REMARK 465 HIS A 621 REMARK 465 HIS A 622 REMARK 465 HIS A 623 REMARK 465 HIS A 624 REMARK 465 LEU B 268 REMARK 465 GLU B 269 REMARK 465 GLU B 270 REMARK 465 LYS B 271 REMARK 465 LYS B 272 REMARK 465 GLY B 273 REMARK 465 ASN B 274 REMARK 465 TYR B 275 REMARK 465 VAL B 276 REMARK 465 VAL B 277 REMARK 465 THR B 278 REMARK 465 ASP B 279 REMARK 465 HIS B 280 REMARK 465 GLY B 281 REMARK 465 SER B 282 REMARK 465 SER B 283 REMARK 465 VAL B 284 REMARK 465 ARG B 285 REMARK 465 ALA B 286 REMARK 465 CYS B 287 REMARK 465 GLY B 288 REMARK 465 ALA B 289 REMARK 465 ASP B 290 REMARK 465 SER B 291 REMARK 465 TYR B 292 REMARK 465 GLU B 293 REMARK 465 MET B 294 REMARK 465 GLU B 295 REMARK 465 GLU B 296 REMARK 465 ASP B 297 REMARK 465 GLY B 298 REMARK 465 VAL B 299 REMARK 465 ARG B 300 REMARK 465 LYS B 301 REMARK 465 CYS B 302 REMARK 465 LYS B 303 REMARK 465 THR B 614 REMARK 465 ASN B 615 REMARK 465 GLY B 616 REMARK 465 PRO B 617 REMARK 465 LYS B 618 REMARK 465 HIS B 619 REMARK 465 HIS B 620 REMARK 465 HIS B 621 REMARK 465 HIS B 622 REMARK 465 HIS B 623 REMARK 465 HIS B 624 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 GLN A 366 CG CD OE1 NE2 REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 LYS A 454 CG CD CE NZ REMARK 470 GLU A 519 CG CD OE1 OE2 REMARK 470 MET A 543 CG SD CE REMARK 470 GLU A 578 CG CD OE1 OE2 REMARK 470 ASN A 580 CG OD1 ND2 REMARK 470 THR A 581 OG1 CG2 REMARK 470 GLU A 610 CG CD OE1 OE2 REMARK 470 LYS B 304 CG CD CE NZ REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 ILE B 318 CG1 CG2 CD1 REMARK 470 LYS B 322 CG CD CE NZ REMARK 470 LYS B 333 CG CD CE NZ REMARK 470 LYS B 336 CG CD CE NZ REMARK 470 GLN B 366 CG CD OE1 NE2 REMARK 470 LYS B 375 CG CD CE NZ REMARK 470 LYS B 443 CG CD CE NZ REMARK 470 LYS B 454 CG CD CE NZ REMARK 470 LYS B 455 CG CD CE NZ REMARK 470 GLU B 472 CG CD OE1 OE2 REMARK 470 MET B 576 CG SD CE REMARK 470 GLU B 578 CG CD OE1 OE2 REMARK 470 ASN B 579 CG OD1 ND2 REMARK 470 ASN B 580 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 337 O5 NAG A 701 2.08 REMARK 500 ND2 ASN A 504 O5 NAG A 702 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 547 CB CYS A 547 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 604 CA - CB - SG ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 393 50.87 -98.42 REMARK 500 GLN A 411 -53.77 -136.51 REMARK 500 TYR A 447 -18.15 70.13 REMARK 500 ASN A 469 -169.53 -102.38 REMARK 500 ASN A 504 -85.72 -120.16 REMARK 500 MET A 543 -67.66 -94.85 REMARK 500 HIS A 560 -80.15 -122.67 REMARK 500 ASN A 579 167.19 150.87 REMARK 500 LEU B 393 50.68 -99.47 REMARK 500 GLN B 411 -55.10 -134.37 REMARK 500 SER B 418 36.34 72.72 REMARK 500 TYR B 447 -14.71 65.52 REMARK 500 ASN B 469 -165.34 -103.40 REMARK 500 GLU B 472 -71.49 -52.43 REMARK 500 ASN B 504 -81.08 -111.87 REMARK 500 SER B 529 19.00 55.23 REMARK 500 HIS B 560 -76.82 -129.43 REMARK 500 ALA B 573 80.09 -154.06 REMARK 500 ASN B 579 169.38 154.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8UKX RELATED DB: PDB REMARK 900 8UKX CONTAINS THE SAME PROTEIN WITH DIFFERENT SPACE GROUP AND PH REMARK 900 RELATED ID: 8UKV RELATED DB: PDB REMARK 900 8UKV CONTAINS THE SAME PROTEIN IN COMPLEX WITH A NANOBODY DBREF 8UKW A 268 273 UNP P00533 EGFR_HUMAN 25 30 DBREF 8UKW A 274 618 UNP P00533 EGFR_HUMAN 298 642 DBREF 8UKW B 268 273 UNP P00533 EGFR_HUMAN 25 30 DBREF 8UKW B 274 618 UNP P00533 EGFR_HUMAN 298 642 SEQADV 8UKW GLY A 273 UNP P00533 VAL 30 ENGINEERED MUTATION SEQADV 8UKW SER A 283 UNP P00533 CYS 307 ENGINEERED MUTATION SEQADV 8UKW HIS A 619 UNP P00533 EXPRESSION TAG SEQADV 8UKW HIS A 620 UNP P00533 EXPRESSION TAG SEQADV 8UKW HIS A 621 UNP P00533 EXPRESSION TAG SEQADV 8UKW HIS A 622 UNP P00533 EXPRESSION TAG SEQADV 8UKW HIS A 623 UNP P00533 EXPRESSION TAG SEQADV 8UKW HIS A 624 UNP P00533 EXPRESSION TAG SEQADV 8UKW GLY B 273 UNP P00533 VAL 30 ENGINEERED MUTATION SEQADV 8UKW SER B 283 UNP P00533 CYS 307 ENGINEERED MUTATION SEQADV 8UKW HIS B 619 UNP P00533 EXPRESSION TAG SEQADV 8UKW HIS B 620 UNP P00533 EXPRESSION TAG SEQADV 8UKW HIS B 621 UNP P00533 EXPRESSION TAG SEQADV 8UKW HIS B 622 UNP P00533 EXPRESSION TAG SEQADV 8UKW HIS B 623 UNP P00533 EXPRESSION TAG SEQADV 8UKW HIS B 624 UNP P00533 EXPRESSION TAG SEQRES 1 A 357 LEU GLU GLU LYS LYS GLY ASN TYR VAL VAL THR ASP HIS SEQRES 2 A 357 GLY SER SER VAL ARG ALA CYS GLY ALA ASP SER TYR GLU SEQRES 3 A 357 MET GLU GLU ASP GLY VAL ARG LYS CYS LYS LYS CYS GLU SEQRES 4 A 357 GLY PRO CYS ARG LYS VAL CYS ASN GLY ILE GLY ILE GLY SEQRES 5 A 357 GLU PHE LYS ASP SER LEU SER ILE ASN ALA THR ASN ILE SEQRES 6 A 357 LYS HIS PHE LYS ASN CYS THR SER ILE SER GLY ASP LEU SEQRES 7 A 357 HIS ILE LEU PRO VAL ALA PHE ARG GLY ASP SER PHE THR SEQRES 8 A 357 HIS THR PRO PRO LEU ASP PRO GLN GLU LEU ASP ILE LEU SEQRES 9 A 357 LYS THR VAL LYS GLU ILE THR GLY PHE LEU LEU ILE GLN SEQRES 10 A 357 ALA TRP PRO GLU ASN ARG THR ASP LEU HIS ALA PHE GLU SEQRES 11 A 357 ASN LEU GLU ILE ILE ARG GLY ARG THR LYS GLN HIS GLY SEQRES 12 A 357 GLN PHE SER LEU ALA VAL VAL SER LEU ASN ILE THR SER SEQRES 13 A 357 LEU GLY LEU ARG SER LEU LYS GLU ILE SER ASP GLY ASP SEQRES 14 A 357 VAL ILE ILE SER GLY ASN LYS ASN LEU CYS TYR ALA ASN SEQRES 15 A 357 THR ILE ASN TRP LYS LYS LEU PHE GLY THR SER GLY GLN SEQRES 16 A 357 LYS THR LYS ILE ILE SER ASN ARG GLY GLU ASN SER CYS SEQRES 17 A 357 LYS ALA THR GLY GLN VAL CYS HIS ALA LEU CYS SER PRO SEQRES 18 A 357 GLU GLY CYS TRP GLY PRO GLU PRO ARG ASP CYS VAL SER SEQRES 19 A 357 CYS ARG ASN VAL SER ARG GLY ARG GLU CYS VAL ASP LYS SEQRES 20 A 357 CYS ASN LEU LEU GLU GLY GLU PRO ARG GLU PHE VAL GLU SEQRES 21 A 357 ASN SER GLU CYS ILE GLN CYS HIS PRO GLU CYS LEU PRO SEQRES 22 A 357 GLN ALA MET ASN ILE THR CYS THR GLY ARG GLY PRO ASP SEQRES 23 A 357 ASN CYS ILE GLN CYS ALA HIS TYR ILE ASP GLY PRO HIS SEQRES 24 A 357 CYS VAL LYS THR CYS PRO ALA GLY VAL MET GLY GLU ASN SEQRES 25 A 357 ASN THR LEU VAL TRP LYS TYR ALA ASP ALA GLY HIS VAL SEQRES 26 A 357 CYS HIS LEU CYS HIS PRO ASN CYS THR TYR GLY CYS THR SEQRES 27 A 357 GLY PRO GLY LEU GLU GLY CYS PRO THR ASN GLY PRO LYS SEQRES 28 A 357 HIS HIS HIS HIS HIS HIS SEQRES 1 B 357 LEU GLU GLU LYS LYS GLY ASN TYR VAL VAL THR ASP HIS SEQRES 2 B 357 GLY SER SER VAL ARG ALA CYS GLY ALA ASP SER TYR GLU SEQRES 3 B 357 MET GLU GLU ASP GLY VAL ARG LYS CYS LYS LYS CYS GLU SEQRES 4 B 357 GLY PRO CYS ARG LYS VAL CYS ASN GLY ILE GLY ILE GLY SEQRES 5 B 357 GLU PHE LYS ASP SER LEU SER ILE ASN ALA THR ASN ILE SEQRES 6 B 357 LYS HIS PHE LYS ASN CYS THR SER ILE SER GLY ASP LEU SEQRES 7 B 357 HIS ILE LEU PRO VAL ALA PHE ARG GLY ASP SER PHE THR SEQRES 8 B 357 HIS THR PRO PRO LEU ASP PRO GLN GLU LEU ASP ILE LEU SEQRES 9 B 357 LYS THR VAL LYS GLU ILE THR GLY PHE LEU LEU ILE GLN SEQRES 10 B 357 ALA TRP PRO GLU ASN ARG THR ASP LEU HIS ALA PHE GLU SEQRES 11 B 357 ASN LEU GLU ILE ILE ARG GLY ARG THR LYS GLN HIS GLY SEQRES 12 B 357 GLN PHE SER LEU ALA VAL VAL SER LEU ASN ILE THR SER SEQRES 13 B 357 LEU GLY LEU ARG SER LEU LYS GLU ILE SER ASP GLY ASP SEQRES 14 B 357 VAL ILE ILE SER GLY ASN LYS ASN LEU CYS TYR ALA ASN SEQRES 15 B 357 THR ILE ASN TRP LYS LYS LEU PHE GLY THR SER GLY GLN SEQRES 16 B 357 LYS THR LYS ILE ILE SER ASN ARG GLY GLU ASN SER CYS SEQRES 17 B 357 LYS ALA THR GLY GLN VAL CYS HIS ALA LEU CYS SER PRO SEQRES 18 B 357 GLU GLY CYS TRP GLY PRO GLU PRO ARG ASP CYS VAL SER SEQRES 19 B 357 CYS ARG ASN VAL SER ARG GLY ARG GLU CYS VAL ASP LYS SEQRES 20 B 357 CYS ASN LEU LEU GLU GLY GLU PRO ARG GLU PHE VAL GLU SEQRES 21 B 357 ASN SER GLU CYS ILE GLN CYS HIS PRO GLU CYS LEU PRO SEQRES 22 B 357 GLN ALA MET ASN ILE THR CYS THR GLY ARG GLY PRO ASP SEQRES 23 B 357 ASN CYS ILE GLN CYS ALA HIS TYR ILE ASP GLY PRO HIS SEQRES 24 B 357 CYS VAL LYS THR CYS PRO ALA GLY VAL MET GLY GLU ASN SEQRES 25 B 357 ASN THR LEU VAL TRP LYS TYR ALA ASP ALA GLY HIS VAL SEQRES 26 B 357 CYS HIS LEU CYS HIS PRO ASN CYS THR TYR GLY CYS THR SEQRES 27 B 357 GLY PRO GLY LEU GLU GLY CYS PRO THR ASN GLY PRO LYS SEQRES 28 B 357 HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG A 701 14 HET NAG A 702 14 HET NAG B 701 14 HET NAG B 702 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 10(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 10 HOH *117(H2 O) HELIX 1 AA1 ILE A 318 LYS A 322 5 5 HELIX 2 AA2 ASN A 331 LYS A 336 5 6 HELIX 3 AA3 LEU A 348 GLY A 354 1 7 HELIX 4 AA4 ASP A 364 VAL A 374 5 11 HELIX 5 AA5 LEU A 393 GLU A 397 5 5 HELIX 6 AA6 LYS A 407 GLY A 410 5 4 HELIX 7 AA7 TYR A 447 ILE A 451 5 5 HELIX 8 AA8 ASN A 452 LEU A 456 5 5 HELIX 9 AA9 GLY A 471 THR A 478 1 8 HELIX 10 AB1 GLU A 495 CYS A 499 5 5 HELIX 11 AB2 GLY A 608 CYS A 612 5 5 HELIX 12 AB3 ILE B 318 LYS B 322 5 5 HELIX 13 AB4 ASN B 331 LYS B 336 5 6 HELIX 14 AB5 LEU B 348 GLY B 354 1 7 HELIX 15 AB6 ASP B 355 HIS B 359 5 5 HELIX 16 AB7 ASP B 364 VAL B 374 5 11 HELIX 17 AB8 LEU B 393 GLU B 397 5 5 HELIX 18 AB9 LYS B 407 GLY B 410 5 4 HELIX 19 AC1 TYR B 447 ILE B 451 5 5 HELIX 20 AC2 ASN B 452 LEU B 456 5 5 HELIX 21 AC3 GLY B 471 THR B 478 1 8 HELIX 22 AC4 GLU B 495 CYS B 499 5 5 HELIX 23 AC5 GLY B 608 CYS B 612 5 5 SHEET 1 AA1 5 VAL A 312 ASN A 314 0 SHEET 2 AA1 5 SER A 340 SER A 342 1 O SER A 342 N CYS A 313 SHEET 3 AA1 5 GLU A 376 ILE A 377 1 O GLU A 376 N ILE A 341 SHEET 4 AA1 5 ILE A 401 ILE A 402 1 O ILE A 401 N ILE A 377 SHEET 5 AA1 5 GLU A 431 ILE A 432 1 O GLU A 431 N ILE A 402 SHEET 1 AA2 5 LEU A 345 ILE A 347 0 SHEET 2 AA2 5 LEU A 381 ILE A 383 1 O LEU A 382 N LEU A 345 SHEET 3 AA2 5 PHE A 412 VAL A 417 1 O ALA A 415 N ILE A 383 SHEET 4 AA2 5 ASP A 436 SER A 440 1 O ASP A 436 N SER A 413 SHEET 5 AA2 5 THR A 464 ILE A 467 1 O LYS A 465 N ILE A 439 SHEET 1 AA3 2 VAL A 505 ARG A 507 0 SHEET 2 AA3 2 GLU A 510 VAL A 512 -1 O VAL A 512 N VAL A 505 SHEET 1 AA4 2 GLU A 524 GLU A 527 0 SHEET 2 AA4 2 GLU A 530 GLN A 533 -1 O ILE A 532 N PHE A 525 SHEET 1 AA5 2 TYR A 561 ASP A 563 0 SHEET 2 AA5 2 HIS A 566 VAL A 568 -1 O HIS A 566 N ASP A 563 SHEET 1 AA6 3 ALA A 573 MET A 576 0 SHEET 2 AA6 3 LEU A 582 ALA A 587 -1 O VAL A 583 N VAL A 575 SHEET 3 AA6 3 CYS A 593 LEU A 595 -1 O HIS A 594 N TYR A 586 SHEET 1 AA7 5 VAL B 312 ASN B 314 0 SHEET 2 AA7 5 SER B 340 SER B 342 1 O SER B 340 N CYS B 313 SHEET 3 AA7 5 GLU B 376 ILE B 377 1 O GLU B 376 N ILE B 341 SHEET 4 AA7 5 ILE B 401 ILE B 402 1 O ILE B 401 N ILE B 377 SHEET 5 AA7 5 GLU B 431 ILE B 432 1 O GLU B 431 N ILE B 402 SHEET 1 AA8 5 LEU B 345 ILE B 347 0 SHEET 2 AA8 5 LEU B 381 ILE B 383 1 O LEU B 382 N LEU B 345 SHEET 3 AA8 5 PHE B 412 VAL B 417 1 O ALA B 415 N ILE B 383 SHEET 4 AA8 5 ASP B 436 SER B 440 1 O ASP B 436 N SER B 413 SHEET 5 AA8 5 THR B 464 ILE B 467 1 O LYS B 465 N VAL B 437 SHEET 1 AA9 2 VAL B 505 ARG B 507 0 SHEET 2 AA9 2 GLU B 510 VAL B 512 -1 O VAL B 512 N VAL B 505 SHEET 1 AB1 2 GLU B 524 GLU B 527 0 SHEET 2 AB1 2 GLU B 530 GLN B 533 -1 O ILE B 532 N PHE B 525 SHEET 1 AB2 2 TYR B 561 ASP B 563 0 SHEET 2 AB2 2 HIS B 566 VAL B 568 -1 O VAL B 568 N TYR B 561 SHEET 1 AB3 3 ALA B 573 MET B 576 0 SHEET 2 AB3 3 LEU B 582 ALA B 587 -1 O VAL B 583 N VAL B 575 SHEET 3 AB3 3 CYS B 593 LEU B 595 -1 O HIS B 594 N TYR B 586 SSBOND 1 CYS A 305 CYS A 309 1555 1555 2.04 SSBOND 2 CYS A 313 CYS A 338 1555 1555 2.03 SSBOND 3 CYS A 446 CYS A 475 1555 1555 2.06 SSBOND 4 CYS A 482 CYS A 491 1555 1555 2.04 SSBOND 5 CYS A 486 CYS A 499 1555 1555 2.05 SSBOND 6 CYS A 502 CYS A 511 1555 1555 2.06 SSBOND 7 CYS A 515 CYS A 531 1555 1555 2.05 SSBOND 8 CYS A 534 CYS A 547 1555 1555 2.04 SSBOND 9 CYS A 538 CYS A 555 1555 1555 2.05 SSBOND 10 CYS A 558 CYS A 567 1555 1555 2.04 SSBOND 11 CYS A 571 CYS A 593 1555 1555 2.04 SSBOND 12 CYS A 596 CYS A 604 1555 1555 2.04 SSBOND 13 CYS A 600 CYS A 612 1555 1555 2.03 SSBOND 14 CYS B 305 CYS B 309 1555 1555 2.04 SSBOND 15 CYS B 313 CYS B 338 1555 1555 2.03 SSBOND 16 CYS B 446 CYS B 475 1555 1555 2.04 SSBOND 17 CYS B 482 CYS B 491 1555 1555 2.04 SSBOND 18 CYS B 486 CYS B 499 1555 1555 2.04 SSBOND 19 CYS B 502 CYS B 511 1555 1555 2.05 SSBOND 20 CYS B 515 CYS B 531 1555 1555 2.05 SSBOND 21 CYS B 534 CYS B 547 1555 1555 2.06 SSBOND 22 CYS B 538 CYS B 555 1555 1555 2.04 SSBOND 23 CYS B 558 CYS B 567 1555 1555 2.05 SSBOND 24 CYS B 571 CYS B 593 1555 1555 2.05 SSBOND 25 CYS B 596 CYS B 604 1555 1555 2.04 SSBOND 26 CYS B 600 CYS B 612 1555 1555 2.02 LINK ND2 ASN A 328 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 337 C1 NAG A 701 1555 1555 1.43 LINK ND2 ASN A 504 C1 NAG A 702 1555 1555 1.43 LINK ND2 ASN B 328 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 420 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 504 C1 NAG B 701 1555 1555 1.44 LINK ND2 ASN B 544 C1 NAG B 702 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 CISPEP 1 GLU A 521 PRO A 522 0 -3.33 CISPEP 2 GLU B 521 PRO B 522 0 0.53 CRYST1 48.818 88.294 99.751 90.00 95.25 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020484 0.000000 0.001882 0.00000 SCALE2 0.000000 0.011326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010067 0.00000