HEADER HYDROLASE,ONCOPROTEIN/INHIBITOR 18-OCT-23 8UN4 TITLE KRAS-G13D-GDP IN COMPLEX WITH CPD36 ((E)-1-((3S)-4-(7-(6-AMINO-4- TITLE 2 METHYL-3-(TRIFLUOROMETHYL)PYRIDIN-2-YL)-6-CHLORO-8-FLUORO-2-(((S)-2- TITLE 3 METHYLENETETRAHYDRO-1H-PYRROLIZIN-7A(5H)-YL)METHOXY)QUINAZOLIN-4-YL)- TITLE 4 3-METHYLPIPERAZIN-1-YL)-3-(4-((DIMETHYLAMINO)METHYL)-5-METHYLPYRIDIN- TITLE 5 2-YL)PROP-2-EN-1-ONE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-169; COMPND 5 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS GTPASE, KRAS, G13D, ONCOGENIC, HYDROLASE, ONCOPROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.H.ULTSCH REVDAT 2 31-JAN-24 8UN4 1 JRNL REVDAT 1 20-DEC-23 8UN4 0 JRNL AUTH C.NILEWSKI,S.LABADIE,B.WEI,S.MALHOTRA,S.DO,L.GAZZARD,L.LIU, JRNL AUTH 2 C.SHAO,J.MURRAY,Y.IZRAYELIT,A.GUSTAFSON,N.F.ENDRES,F.MA, JRNL AUTH 3 X.YE,J.ZOU,M.EVANGELISTA JRNL TITL STRUCTURE-BASED DESIGN AND EVALUATION OF REVERSIBLE KRAS JRNL TITL 2 G13D INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 15 21 2024 JRNL REFN ISSN 1948-5875 JRNL PMID 38229748 JRNL DOI 10.1021/ACSMEDCHEMLETT.3C00478 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1-4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.4 REMARK 3 NUMBER OF REFLECTIONS : 21127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7400 - 3.1500 0.99 3454 182 0.1552 0.1710 REMARK 3 2 3.1500 - 2.5000 1.00 3342 161 0.1810 0.1959 REMARK 3 3 2.5000 - 2.1800 1.00 3272 181 0.1825 0.2261 REMARK 3 4 2.1800 - 1.9800 1.00 3226 195 0.2120 0.2607 REMARK 3 5 1.9800 - 1.8400 0.98 3207 143 0.2645 0.2855 REMARK 3 6 1.8400 - 1.7300 0.74 2395 139 0.3300 0.3679 REMARK 3 7 1.7300 - 1.6500 0.27 862 53 0.5735 0.5875 REMARK 3 8 1.6500 - 1.5700 0.09 299 16 1.0418 0.7339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3612 19.2178 13.5593 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1702 REMARK 3 T33: 0.1137 T12: -0.0181 REMARK 3 T13: -0.0078 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.5456 L22: 1.8660 REMARK 3 L33: 0.7139 L12: -0.3991 REMARK 3 L13: 0.3102 L23: 0.2186 REMARK 3 S TENSOR REMARK 3 S11: -0.1340 S12: 0.2783 S13: 0.1815 REMARK 3 S21: -0.1198 S22: -0.0353 S23: 0.0302 REMARK 3 S31: -0.0939 S32: 0.0493 S33: -0.0184 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2369 24.4999 21.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.2095 REMARK 3 T33: 0.2604 T12: 0.0111 REMARK 3 T13: 0.0750 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.7140 L22: 0.3780 REMARK 3 L33: 0.3782 L12: -0.3662 REMARK 3 L13: 0.3927 L23: -0.1149 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.0115 S13: 0.3529 REMARK 3 S21: -0.0048 S22: 0.0027 S23: -0.0181 REMARK 3 S31: -0.1317 S32: 0.0091 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7109 21.3967 5.5948 REMARK 3 T TENSOR REMARK 3 T11: 0.1941 T22: 0.4200 REMARK 3 T33: 0.2108 T12: -0.0755 REMARK 3 T13: 0.0044 T23: 0.1220 REMARK 3 L TENSOR REMARK 3 L11: 0.2495 L22: 0.8620 REMARK 3 L33: 0.0893 L12: -0.2999 REMARK 3 L13: -0.1245 L23: 0.1887 REMARK 3 S TENSOR REMARK 3 S11: -0.2075 S12: 0.5805 S13: 0.3179 REMARK 3 S21: -0.1993 S22: -0.0951 S23: -0.0757 REMARK 3 S31: -0.1432 S32: 0.2435 S33: -0.2735 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4475 5.2195 14.2511 REMARK 3 T TENSOR REMARK 3 T11: 0.3114 T22: 0.2621 REMARK 3 T33: 0.3347 T12: -0.0597 REMARK 3 T13: 0.0578 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.6578 L22: 0.7726 REMARK 3 L33: 0.2010 L12: 0.1297 REMARK 3 L13: 0.2233 L23: -0.2715 REMARK 3 S TENSOR REMARK 3 S11: -0.1447 S12: 0.1500 S13: -0.3001 REMARK 3 S21: 0.0344 S22: 0.2360 S23: 0.6319 REMARK 3 S31: 0.3267 S32: -0.5056 S33: 0.0065 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8237 7.2712 19.2716 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.1268 REMARK 3 T33: 0.1900 T12: 0.0147 REMARK 3 T13: 0.0684 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.3008 L22: 1.6237 REMARK 3 L33: 1.0184 L12: -0.1752 REMARK 3 L13: 0.7441 L23: -0.2438 REMARK 3 S TENSOR REMARK 3 S11: -0.1229 S12: 0.0441 S13: -0.4377 REMARK 3 S21: 0.1092 S22: 0.0521 S23: -0.2513 REMARK 3 S31: 0.3622 S32: -0.0098 S33: 0.0065 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4121 16.6911 24.7869 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.2123 REMARK 3 T33: 0.2807 T12: 0.0388 REMARK 3 T13: -0.0733 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.5801 L22: 1.4350 REMARK 3 L33: 0.3859 L12: 0.8786 REMARK 3 L13: 0.3217 L23: -0.1430 REMARK 3 S TENSOR REMARK 3 S11: -0.1959 S12: -0.2770 S13: 0.0104 REMARK 3 S21: 0.4322 S22: 0.1266 S23: -0.6881 REMARK 3 S31: -0.0884 S32: 0.1584 S33: -0.0094 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8347 14.5449 7.0169 REMARK 3 T TENSOR REMARK 3 T11: 0.1821 T22: 0.3616 REMARK 3 T33: 0.2519 T12: -0.0120 REMARK 3 T13: 0.1147 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.9374 L22: 1.4461 REMARK 3 L33: 3.2864 L12: 1.2638 REMARK 3 L13: 1.0274 L23: 0.6581 REMARK 3 S TENSOR REMARK 3 S11: 0.0814 S12: 0.6465 S13: -0.3695 REMARK 3 S21: -0.3014 S22: 0.2838 S23: -0.7388 REMARK 3 S31: 0.3376 S32: 0.5232 S33: 0.2851 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000278401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979110 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21157 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 46.663 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.87300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MMT PH 5.0, 25 % W/V POLYETHYLENE REMARK 280 GLYCOL 1,500, EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 20.36500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.74500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 20.36500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.74500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 437 O HOH A 456 1.76 REMARK 500 OD2 ASP A 132 O HOH A 301 1.97 REMARK 500 O HOH A 354 O HOH A 465 2.00 REMARK 500 O HOH A 383 O HOH A 410 2.09 REMARK 500 O HOH A 341 O HOH A 383 2.12 REMARK 500 O HOH A 425 O HOH A 440 2.15 REMARK 500 O HOH A 316 O HOH A 390 2.17 REMARK 500 O HOH A 309 O HOH A 447 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 461 O HOH A 477 2555 1.94 REMARK 500 O HOH A 454 O HOH A 456 3555 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 122 46.27 -99.35 REMARK 500 ARG A 149 -6.28 85.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 482 DISTANCE = 7.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 202 O1B 92.9 REMARK 620 3 HOH A 306 O 94.1 84.9 REMARK 620 4 HOH A 311 O 82.8 98.7 175.3 REMARK 620 5 HOH A 320 O 175.9 89.4 89.6 93.5 REMARK 620 6 HOH A 365 O 88.1 172.5 87.7 88.7 90.1 REMARK 620 N 1 2 3 4 5 DBREF 8UN4 A 2 169 UNP P01116 RASK_HUMAN 2 169 SEQADV 8UN4 GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 8UN4 SER A 1 UNP P01116 EXPRESSION TAG SEQADV 8UN4 ASP A 13 UNP P01116 GLY 13 VARIANT SEQRES 1 A 170 GLY SER THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 170 ASP VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 170 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 170 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 14 A 170 LYS HET MG A 201 1 HET GDP A 202 28 HET XV3 A 203 103 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM XV3 (2E)-1-{(3S)-4-[(7M)-7-[6-AMINO-4-METHYL-3- HETNAM 2 XV3 (TRIFLUOROMETHYL)PYRIDIN-2-YL]-6-CHLORO-8-FLUORO-2- HETNAM 3 XV3 {[(4R,7AS)-2-METHYLIDENETETRAHYDRO-1H-PYRROLIZIN- HETNAM 4 XV3 7A(5H)-YL]METHOXY}QUINAZOLIN-4-YL]-3-METHYLPIPERAZIN- HETNAM 5 XV3 1-YL}-3-{4-[(DIMETHYLAMINO)METHYL]-5-METHYLPYRIDIN-2- HETNAM 6 XV3 YL}PROP-2-EN-1-ONE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 XV3 C41 H46 CL F4 N9 O2 FORMUL 5 HOH *182(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 THR A 74 1 10 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 GLU A 168 1 18 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 201 1555 1555 2.03 LINK MG MG A 201 O1B GDP A 202 1555 1555 2.03 LINK MG MG A 201 O HOH A 306 1555 1555 2.17 LINK MG MG A 201 O HOH A 311 1555 1555 2.12 LINK MG MG A 201 O HOH A 320 1555 1555 2.19 LINK MG MG A 201 O HOH A 365 1555 1555 2.16 CRYST1 40.730 55.690 85.490 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024552 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011697 0.00000