HEADER HYDROLASE,ONCOPROTEIN/INHIBITOR 18-OCT-23 8UN5 TITLE KRAS-G13D-GDP IN COMPLEX WITH CPD38 ((E)-1-((3S)-4-(7-(6-AMINO-4- TITLE 2 METHYL-3-(TRIFLUOROMETHYL)PYRIDIN-2-YL)-6-CHLORO-8-FLUORO-2-(((S)-2- TITLE 3 METHYLENETETRAHYDRO-1H-PYRROLIZIN-7A(5H)-YL)METHOXY)QUINAZOLIN-4-YL)- TITLE 4 3-METHYLPIPERAZIN-1-YL)-3-(1,2,3,4-TETRAHYDROISOQUINOLIN-8-YL)PROP-2- TITLE 5 EN-1-ONE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GTPASE, RESIDUES 2-168; COMPND 5 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GTPASE, KRAS, G13D, ONCOGENIC, RIBOSOME, HYDROLASE, ONCOPROTEIN- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.H.ULTSCH REVDAT 2 31-JAN-24 8UN5 1 JRNL REVDAT 1 20-DEC-23 8UN5 0 JRNL AUTH C.NILEWSKI,S.LABADIE,B.WEI,S.MALHOTRA,S.DO,L.GAZZARD,L.LIU, JRNL AUTH 2 C.SHAO,J.MURRAY,Y.IZRAYELIT,A.GUSTAFSON,N.F.ENDRES,F.MA, JRNL AUTH 3 X.YE,J.ZOU,M.EVANGELISTA JRNL TITL STRUCTURE-BASED DESIGN AND EVALUATION OF REVERSIBLE KRAS JRNL TITL 2 G13D INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 15 21 2024 JRNL REFN ISSN 1948-5875 JRNL PMID 38229748 JRNL DOI 10.1021/ACSMEDCHEMLETT.3C00478 REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3936 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 60.6 REMARK 3 NUMBER OF REFLECTIONS : 45344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.580 REMARK 3 FREE R VALUE TEST SET COUNT : 2077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1900 - 3.2400 0.97 4573 246 0.1373 0.1529 REMARK 3 2 3.2300 - 2.5700 0.97 4652 202 0.1575 0.1951 REMARK 3 3 2.5700 - 2.2400 0.97 4672 166 0.1603 0.2155 REMARK 3 4 2.2400 - 2.0400 0.96 4567 223 0.1706 0.2167 REMARK 3 5 2.0400 - 1.8900 0.95 4570 223 0.1853 0.2306 REMARK 3 6 1.8900 - 1.7800 0.88 4217 149 0.2091 0.2421 REMARK 3 7 1.7800 - 1.6900 0.74 3508 189 0.2202 0.2711 REMARK 3 8 1.6900 - 1.6200 0.65 3102 151 0.2610 0.3148 REMARK 3 9 1.6200 - 1.5600 0.59 2787 151 0.2802 0.2370 REMARK 3 10 1.5600 - 1.5000 0.51 2420 143 0.2960 0.3653 REMARK 3 11 1.5000 - 1.4600 0.41 1955 124 0.3684 0.3704 REMARK 3 12 1.4600 - 1.4100 0.28 1354 63 0.4344 0.4715 REMARK 3 13 1.4100 - 1.3800 0.15 714 37 0.5729 0.7859 REMARK 3 14 1.3800 - 1.3400 0.03 148 9 0.7496 0.9744 REMARK 3 15 1.3400 - 1.3100 0.01 28 1 0.7178 0.0167 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2963 REMARK 3 ANGLE : 0.988 4037 REMARK 3 CHIRALITY : 0.071 434 REMARK 3 PLANARITY : 0.004 507 REMARK 3 DIHEDRAL : 23.803 1093 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4710 -1.8384 -20.6209 REMARK 3 T TENSOR REMARK 3 T11: 0.1198 T22: 0.1498 REMARK 3 T33: 0.1581 T12: 0.0145 REMARK 3 T13: 0.0040 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 0.2082 L22: 0.5926 REMARK 3 L33: 0.8051 L12: 0.1272 REMARK 3 L13: -0.0337 L23: 0.0161 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: 0.0031 S13: 0.0436 REMARK 3 S21: -0.0998 S22: -0.1727 S23: -0.1822 REMARK 3 S31: 0.0349 S32: 0.2355 S33: -0.0012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6533 -4.1029 -8.2221 REMARK 3 T TENSOR REMARK 3 T11: 0.0907 T22: 0.0814 REMARK 3 T33: 0.0660 T12: -0.0242 REMARK 3 T13: 0.0038 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.6351 L22: 1.5651 REMARK 3 L33: 1.7842 L12: 0.0503 REMARK 3 L13: -0.4472 L23: -0.7629 REMARK 3 S TENSOR REMARK 3 S11: 0.0885 S12: -0.1239 S13: 0.0002 REMARK 3 S21: 0.2003 S22: -0.1232 S23: -0.0526 REMARK 3 S31: -0.1712 S32: 0.1033 S33: 0.0063 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9715 6.8251 -14.1799 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.1219 REMARK 3 T33: 0.1361 T12: 0.0062 REMARK 3 T13: 0.0110 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.8010 L22: 0.8126 REMARK 3 L33: 1.2298 L12: -0.2693 REMARK 3 L13: -0.2445 L23: -0.4936 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: -0.0836 S13: 0.1256 REMARK 3 S21: 0.0579 S22: -0.0536 S23: -0.0166 REMARK 3 S31: -0.3231 S32: -0.0143 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4193 -28.6635 -34.1912 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.1087 REMARK 3 T33: 0.1187 T12: 0.0002 REMARK 3 T13: 0.0056 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.3901 L22: 0.4648 REMARK 3 L33: 1.2171 L12: -0.4214 REMARK 3 L13: 0.1743 L23: -0.1083 REMARK 3 S TENSOR REMARK 3 S11: -0.0838 S12: 0.0042 S13: -0.0976 REMARK 3 S21: 0.0895 S22: 0.0339 S23: 0.1126 REMARK 3 S31: 0.1704 S32: -0.0831 S33: -0.0024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2812 -28.4216 -33.9922 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.1361 REMARK 3 T33: 0.1962 T12: 0.0132 REMARK 3 T13: 0.0217 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.3475 L22: 0.1601 REMARK 3 L33: 0.5107 L12: 0.0406 REMARK 3 L13: -0.1237 L23: -0.0320 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.0470 S13: -0.3560 REMARK 3 S21: 0.0516 S22: 0.0150 S23: 0.2464 REMARK 3 S31: -0.0289 S32: -0.1262 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4607 -35.8473 -49.5611 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.1153 REMARK 3 T33: 0.1276 T12: -0.0249 REMARK 3 T13: -0.0018 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 1.9171 L22: 0.0847 REMARK 3 L33: 2.1618 L12: 0.1234 REMARK 3 L13: -1.1759 L23: 0.2574 REMARK 3 S TENSOR REMARK 3 S11: -0.1720 S12: 0.1094 S13: -0.3333 REMARK 3 S21: 0.0312 S22: 0.0382 S23: 0.1527 REMARK 3 S31: 0.5983 S32: -0.0824 S33: -0.4486 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9635 -21.6332 -48.4115 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.1280 REMARK 3 T33: 0.1218 T12: -0.0199 REMARK 3 T13: -0.0089 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.2598 L22: 0.9495 REMARK 3 L33: 0.8943 L12: -0.2194 REMARK 3 L13: -0.3642 L23: 0.3218 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: 0.0855 S13: -0.0894 REMARK 3 S21: -0.1405 S22: -0.0050 S23: 0.0196 REMARK 3 S31: -0.0113 S32: -0.0388 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8589 -10.4956 -41.5447 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.1022 REMARK 3 T33: 0.1269 T12: -0.0350 REMARK 3 T13: -0.0319 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: -0.0001 L22: 0.1964 REMARK 3 L33: 0.5402 L12: -0.0032 REMARK 3 L13: 0.0128 L23: -0.2342 REMARK 3 S TENSOR REMARK 3 S11: -0.1488 S12: 0.0393 S13: 0.0422 REMARK 3 S21: 0.1300 S22: 0.1022 S23: -0.2009 REMARK 3 S31: -0.4804 S32: 0.1310 S33: -0.0028 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0597 -15.4213 -34.6859 REMARK 3 T TENSOR REMARK 3 T11: 0.1246 T22: 0.1089 REMARK 3 T33: 0.1128 T12: 0.0023 REMARK 3 T13: -0.0076 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.2654 L22: 0.1644 REMARK 3 L33: 0.1698 L12: -0.0346 REMARK 3 L13: -0.1173 L23: 0.0735 REMARK 3 S TENSOR REMARK 3 S11: -0.0929 S12: 0.0607 S13: 0.1263 REMARK 3 S21: 0.0860 S22: 0.0108 S23: 0.0143 REMARK 3 S31: -0.1166 S32: 0.0537 S33: 0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2076 -19.2237 -40.6404 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.1772 REMARK 3 T33: 0.1507 T12: -0.0044 REMARK 3 T13: -0.0210 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0526 L22: 0.5806 REMARK 3 L33: 1.2138 L12: -0.0921 REMARK 3 L13: 0.0127 L23: -0.1767 REMARK 3 S TENSOR REMARK 3 S11: -0.0260 S12: 0.0671 S13: -0.1937 REMARK 3 S21: 0.0079 S22: 0.1306 S23: 0.2881 REMARK 3 S31: -0.1996 S32: -0.4235 S33: 0.0240 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000278402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979110 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45350 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 31.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 38.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TQA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.5, 30% W/V REMARK 280 PEG 5,000MME, EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 590 O HOH A 622 1.84 REMARK 500 O HOH A 546 O HOH A 577 1.87 REMARK 500 O HOH A 508 O HOH A 541 1.92 REMARK 500 OG SER A 122 O HOH A 401 1.93 REMARK 500 O HOH B 484 O HOH B 490 1.93 REMARK 500 OE2 GLU A 3 O HOH A 402 1.98 REMARK 500 O HOH B 440 O HOH B 501 2.02 REMARK 500 O HOH B 378 O HOH B 510 2.03 REMARK 500 O HOH B 330 O HOH B 443 2.03 REMARK 500 OD2 ASP B 105 O HOH B 301 2.04 REMARK 500 OD2 ASP B 132 O HOH B 302 2.06 REMARK 500 O HOH B 373 O HOH B 477 2.08 REMARK 500 O HOH B 435 O HOH B 501 2.08 REMARK 500 O HOH B 492 O HOH B 503 2.09 REMARK 500 OE1 GLN A 70 O HOH A 403 2.10 REMARK 500 NE2 GLN A 61 O HOH A 404 2.10 REMARK 500 O HOH B 372 O HOH B 390 2.10 REMARK 500 O HOH A 574 O HOH A 594 2.11 REMARK 500 O HOH A 512 O HOH A 543 2.11 REMARK 500 O HOH A 452 O HOH A 625 2.12 REMARK 500 O HOH A 528 O HOH A 569 2.14 REMARK 500 O HOH A 518 O HOH A 618 2.14 REMARK 500 CD2 LEU A 79 CG2 VAL A 112 2.17 REMARK 500 O HOH B 460 O HOH B 489 2.18 REMARK 500 O HOH B 484 O HOH B 495 2.19 REMARK 500 O2 GOL A 302 O HOH A 405 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 576 O HOH B 473 1666 1.95 REMARK 500 O HOH A 415 O HOH B 462 1565 2.05 REMARK 500 O HOH A 437 O HOH A 596 1655 2.11 REMARK 500 O HOH A 593 O HOH B 423 1566 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 135 C ARG A 135 O 0.118 REMARK 500 LYS B 5 C LYS B 5 O 0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 122.97 -38.98 REMARK 500 ARG A 149 -1.40 85.31 REMARK 500 SER B 122 43.54 -84.47 REMARK 500 ARG B 149 -1.08 87.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 303 O1B 95.9 REMARK 620 3 HOH A 419 O 89.1 87.8 REMARK 620 4 HOH A 422 O 85.4 95.8 173.7 REMARK 620 5 HOH A 435 O 84.6 170.9 83.1 93.3 REMARK 620 6 HOH A 461 O 174.2 87.2 95.9 89.5 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 201 O2B 95.0 REMARK 620 3 HOH B 323 O 91.6 89.0 REMARK 620 4 HOH B 326 O 83.8 93.9 174.8 REMARK 620 5 HOH B 336 O 88.0 173.5 85.1 92.2 REMARK 620 6 HOH B 354 O 174.4 85.7 94.0 90.6 91.9 REMARK 620 N 1 2 3 4 5 DBREF 8UN5 A 2 168 UNP P01116 RASK_HUMAN 2 168 DBREF 8UN5 B 2 168 UNP P01116 RASK_HUMAN 2 168 SEQADV 8UN5 GLY A 0 UNP P01116 EXPRESSION TAG SEQADV 8UN5 SER A 1 UNP P01116 EXPRESSION TAG SEQADV 8UN5 ASP A 13 UNP P01116 GLY 13 VARIANT SEQADV 8UN5 GLY B 0 UNP P01116 EXPRESSION TAG SEQADV 8UN5 SER B 1 UNP P01116 EXPRESSION TAG SEQADV 8UN5 ASP B 13 UNP P01116 GLY 13 VARIANT SEQRES 1 A 169 GLY SER THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 A 169 ASP VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 A 169 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 A 169 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 A 169 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 A 169 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 A 169 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 A 169 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 A 169 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 A 169 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 A 169 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 A 169 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 A 169 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU SEQRES 1 B 169 GLY SER THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 B 169 ASP VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 B 169 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 B 169 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 B 169 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 B 169 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 B 169 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 B 169 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 B 169 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 B 169 LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN SEQRES 11 B 169 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE SEQRES 12 B 169 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA SEQRES 13 B 169 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU HET GOL A 301 14 HET GOL A 302 14 HET GDP A 303 28 HET MG A 304 1 HET XQ6 A 305 99 HET GDP B 201 28 HET MG B 202 1 HET XQ6 B 203 99 HETNAM GOL GLYCEROL HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM XQ6 (2E)-1-{(3S)-4-[(7M)-7-[6-AMINO-4-METHYL-3- HETNAM 2 XQ6 (TRIFLUOROMETHYL)PYRIDIN-2-YL]-6-CHLORO-8-FLUORO-2- HETNAM 3 XQ6 {[(4R,7AS)-2-METHYLIDENETETRAHYDRO-1H-PYRROLIZIN- HETNAM 4 XQ6 7A(5H)-YL]METHOXY}QUINAZOLIN-4-YL]-3-METHYLPIPERAZIN- HETNAM 5 XQ6 1-YL}-3-(1,2,3,4-TETRAHYDROISOQUINOLIN-8-YL)PROP-2-EN- HETNAM 6 XQ6 1-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 GDP 2(C10 H15 N5 O11 P2) FORMUL 6 MG 2(MG 2+) FORMUL 7 XQ6 2(C41 H43 CL F4 N8 O2) FORMUL 11 HOH *457(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 THR A 74 1 10 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 GLU A 168 1 18 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 SER B 65 THR B 74 1 10 HELIX 9 AA9 ASN B 86 ASP B 92 1 7 HELIX 10 AB1 ASP B 92 ASP B 105 1 14 HELIX 11 AB2 ASP B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 GLU B 168 1 18 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O ILE B 55 N TYR B 40 SHEET 3 AA2 6 THR B 2 GLY B 10 1 N VAL B 8 O LEU B 56 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 LINK OG SER A 17 MG MG A 304 1555 1555 2.19 LINK O1B GDP A 303 MG MG A 304 1555 1555 1.99 LINK MG MG A 304 O HOH A 419 1555 1555 2.09 LINK MG MG A 304 O HOH A 422 1555 1555 2.14 LINK MG MG A 304 O HOH A 435 1555 1555 2.22 LINK MG MG A 304 O HOH A 461 1555 1555 2.16 LINK OG SER B 17 MG MG B 202 1555 1555 2.12 LINK O2B GDP B 201 MG MG B 202 1555 1555 2.11 LINK MG MG B 202 O HOH B 323 1555 1555 2.09 LINK MG MG B 202 O HOH B 326 1555 1555 2.13 LINK MG MG B 202 O HOH B 336 1555 1555 2.17 LINK MG MG B 202 O HOH B 354 1555 1555 2.15 CRYST1 38.960 41.620 55.550 90.17 91.35 116.28 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025667 0.012674 0.000796 0.00000 SCALE2 0.000000 0.026797 0.000401 0.00000 SCALE3 0.000000 0.000000 0.018009 0.00000