HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-OCT-23 8UOL TITLE CRYSTAL STRUCTURE OF HUMAN NUAK1-MARK3 (6 MUTATIONS) KINASE DOMAIN TITLE 2 CHIMERA BOUND WITH SMALL MOLECULE INHIBITOR #31 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP/MICROTUBULE AFFINITY-REGULATING KINASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: C-TAK1,CTAK1,CDC25C-ASSOCIATED PROTEIN KINASE 1,ELKL MOTIF COMPND 5 KINASE 2,EMK-2,PROTEIN KINASE STK10,SER/THR PROTEIN KINASE PAR-1,PAR- COMPND 6 1A,SERINE/THREONINE-PROTEIN KINASE P78; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MARK3, CTAK1, EMK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, SERINE/THREONINE-PROTEIN KINASE, NUAK1, MARK3, TRANSFERASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.L.DELKER,J.ABENDROTH REVDAT 3 04-MAR-26 8UOL 1 REMARK REVDAT 2 04-JUN-25 8UOL 1 JRNL REVDAT 1 23-OCT-24 8UOL 0 JRNL AUTH K.G.POULLENNEC,E.JNOFF,J.ABENDROTH,N.BHUMA,M.CALMIANO, JRNL AUTH 2 L.CALMUS,A.CARDENAS,J.P.COURADE,C.DELATOUR,A.HALL,T.DE HARO, JRNL AUTH 3 S.L.DELKER,T.DEMAUDE,N.GAIKWAD,D.GHAVATE,A.R.GHOLAP, JRNL AUTH 4 M.KIERKOWICZ,R.LE MESTRE,N.VAN HIJFTE,S.VERHEIJDEN, JRNL AUTH 5 K.VERNEROVA,V.DE WEVER,N.WAGHMODE JRNL TITL DISCOVERY OF UCB9386: A POTENT, SELECTIVE, AND JRNL TITL 2 BRAIN-PENETRANT NUAK1 INHIBITOR SUITABLE FOR IN VIVO JRNL TITL 3 PHARMACOLOGICAL STUDIES. JRNL REF J.MED.CHEM. V. 67 20879 2024 JRNL REFN ISSN 0022-2623 JRNL PMID 39588908 JRNL DOI 10.1021/ACS.JMEDCHEM.4C01237 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4_4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 51315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.6800 - 3.7200 0.99 3348 112 0.1382 0.1922 REMARK 3 2 3.7200 - 3.2500 1.00 3287 143 0.1616 0.1653 REMARK 3 3 3.2500 - 2.9500 0.99 3285 164 0.1786 0.2274 REMARK 3 4 2.9500 - 2.7400 1.00 3288 120 0.1840 0.2056 REMARK 3 5 2.7400 - 2.5800 1.00 3291 145 0.1935 0.2551 REMARK 3 6 2.5800 - 2.4500 1.00 3262 145 0.1899 0.2413 REMARK 3 7 2.4500 - 2.3400 0.99 3269 138 0.1826 0.2210 REMARK 3 8 2.3400 - 2.2500 0.99 3310 129 0.1771 0.2215 REMARK 3 9 2.2500 - 2.1800 0.99 3292 144 0.1768 0.1938 REMARK 3 10 2.1800 - 2.1100 0.99 3269 123 0.1788 0.2305 REMARK 3 11 2.1100 - 2.0500 0.99 3212 131 0.1907 0.2373 REMARK 3 12 2.0500 - 1.9900 0.99 3294 140 0.2094 0.2777 REMARK 3 13 1.9900 - 1.9400 0.99 3264 140 0.2177 0.3013 REMARK 3 14 1.9400 - 1.9000 0.99 3246 138 0.2305 0.2686 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.000 5216 REMARK 3 ANGLE : 0.830 7004 REMARK 3 CHIRALITY : 0.050 761 REMARK 3 PLANARITY : 0.000 880 REMARK 3 DIHEDRAL : 13.440 2030 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8380 -7.8109 34.2357 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.1382 REMARK 3 T33: 0.1518 T12: -0.0149 REMARK 3 T13: -0.0064 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 2.3885 L22: 2.0562 REMARK 3 L33: 3.8271 L12: 0.1746 REMARK 3 L13: -0.3878 L23: -0.2825 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.2274 S13: 0.1071 REMARK 3 S21: -0.2129 S22: 0.0254 S23: -0.0525 REMARK 3 S31: -0.2145 S32: 0.3345 S33: 0.0032 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1341 -20.6253 27.9516 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.1903 REMARK 3 T33: 0.1787 T12: 0.0221 REMARK 3 T13: -0.0242 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.8579 L22: 2.6065 REMARK 3 L33: 1.2474 L12: 1.6264 REMARK 3 L13: 0.2978 L23: 0.9083 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.0351 S13: -0.0083 REMARK 3 S21: -0.2056 S22: -0.0181 S23: 0.0896 REMARK 3 S31: -0.0761 S32: -0.0152 S33: 0.0304 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8495 -29.3022 18.1288 REMARK 3 T TENSOR REMARK 3 T11: 0.2529 T22: 0.2430 REMARK 3 T33: 0.2112 T12: -0.0286 REMARK 3 T13: -0.0921 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.1177 L22: 4.5446 REMARK 3 L33: 2.2125 L12: -0.1516 REMARK 3 L13: 0.0417 L23: 0.3408 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: 0.3264 S13: 0.1088 REMARK 3 S21: -0.5419 S22: -0.1102 S23: 0.2746 REMARK 3 S31: -0.1196 S32: -0.2289 S33: 0.1519 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 314 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4922 -5.1160 46.8667 REMARK 3 T TENSOR REMARK 3 T11: 0.2146 T22: 0.3195 REMARK 3 T33: 0.3094 T12: 0.0599 REMARK 3 T13: 0.0015 T23: -0.0662 REMARK 3 L TENSOR REMARK 3 L11: 2.1004 L22: 1.4168 REMARK 3 L33: 3.2693 L12: 1.7404 REMARK 3 L13: 2.4485 L23: 2.1178 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: -0.1503 S13: 0.0769 REMARK 3 S21: -0.0748 S22: -0.2698 S23: 0.4283 REMARK 3 S31: -0.0345 S32: -0.4499 S33: 0.2406 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9364 -1.7079 -11.7060 REMARK 3 T TENSOR REMARK 3 T11: 0.1699 T22: 0.2468 REMARK 3 T33: 0.2119 T12: -0.0211 REMARK 3 T13: 0.0518 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 2.9241 L22: 2.1478 REMARK 3 L33: 2.4816 L12: 0.9134 REMARK 3 L13: 0.2346 L23: 0.4278 REMARK 3 S TENSOR REMARK 3 S11: -0.1268 S12: 0.4426 S13: -0.0905 REMARK 3 S21: -0.2368 S22: 0.0341 S23: -0.3089 REMARK 3 S31: -0.1536 S32: 0.3959 S33: 0.0758 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3115 3.3151 3.2681 REMARK 3 T TENSOR REMARK 3 T11: 0.1572 T22: 0.2072 REMARK 3 T33: 0.1567 T12: -0.0165 REMARK 3 T13: -0.0261 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 1.3451 L22: 2.6013 REMARK 3 L33: 2.3001 L12: 0.7251 REMARK 3 L13: -0.0767 L23: 1.3629 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0580 S13: -0.0880 REMARK 3 S21: 0.0952 S22: -0.0899 S23: -0.0679 REMARK 3 S31: -0.0113 S32: 0.1274 S33: 0.0849 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 172 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8878 5.3791 6.0598 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.2419 REMARK 3 T33: 0.3240 T12: -0.0270 REMARK 3 T13: -0.0202 T23: 0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.8820 L22: 4.0972 REMARK 3 L33: 1.6026 L12: 0.5152 REMARK 3 L13: -0.9007 L23: 1.0512 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: 0.0455 S13: -0.1012 REMARK 3 S21: 0.1898 S22: -0.0160 S23: -0.8091 REMARK 3 S31: 0.0729 S32: 0.3269 S33: 0.0316 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3473 12.3207 14.2644 REMARK 3 T TENSOR REMARK 3 T11: 0.2683 T22: 0.2219 REMARK 3 T33: 0.2167 T12: 0.0011 REMARK 3 T13: -0.0447 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 1.2846 L22: 3.5642 REMARK 3 L33: 1.4289 L12: 1.5899 REMARK 3 L13: 0.7017 L23: 0.9990 REMARK 3 S TENSOR REMARK 3 S11: 0.3246 S12: -0.2805 S13: -0.1658 REMARK 3 S21: 0.7288 S22: -0.2589 S23: -0.5145 REMARK 3 S31: 0.1302 S32: -0.0126 S33: 0.0005 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 339 THROUGH 367 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4350 -11.5796 -2.5910 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.2099 REMARK 3 T33: 0.1695 T12: -0.0323 REMARK 3 T13: 0.0402 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 6.5300 L22: 2.9767 REMARK 3 L33: 5.7468 L12: -0.0447 REMARK 3 L13: 0.3183 L23: -1.2135 REMARK 3 S TENSOR REMARK 3 S11: -0.1277 S12: -0.5758 S13: -0.5020 REMARK 3 S21: 0.3456 S22: -0.0110 S23: -0.0822 REMARK 3 S31: 0.2973 S32: -0.0065 S33: 0.0992 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.130 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UCB INTERNAL STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG E12 CONDITION: 0.1 M IMIDAZOLE PH REMARK 280 8.0, 10 (%V/V) PEG 8000, 2.5MM COMPOUND 31), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.44000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 ALA A 44 REMARK 465 MET A 45 REMARK 465 GLY A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 GLU A 49 REMARK 465 GLN A 50 REMARK 465 GLY A 207 REMARK 465 LYS A 208 REMARK 465 LEU A 209 REMARK 465 ASP A 210 REMARK 465 THR A 211 REMARK 465 PHE A 212 REMARK 465 CYS A 213 REMARK 465 GLY A 214 REMARK 465 GLN A 225 REMARK 465 GLY A 226 REMARK 465 LYS A 227 REMARK 465 LYS A 228 REMARK 465 GLY B 43 REMARK 465 ALA B 44 REMARK 465 MET B 45 REMARK 465 GLY B 46 REMARK 465 SER B 47 REMARK 465 ASP B 48 REMARK 465 GLU B 49 REMARK 465 GLY B 206 REMARK 465 GLY B 207 REMARK 465 LYS B 208 REMARK 465 LEU B 209 REMARK 465 ASP B 210 REMARK 465 THR B 211 REMARK 465 PHE B 212 REMARK 465 CYS B 213 REMARK 465 GLN B 225 REMARK 465 GLY B 226 REMARK 465 LYS B 227 REMARK 465 LYS B 228 REMARK 465 SER B 368 REMARK 465 SER B 369 REMARK 465 GLU B 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1158 O HOH B 1183 2.14 REMARK 500 OD1 ASP B 88 OG1 THR B 90 2.16 REMARK 500 NH1 ARG B 57 O HOH B 1001 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 271 OE2 GLU B 344 2555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 59 -140.45 -117.03 REMARK 500 ASN A 66 -123.77 57.79 REMARK 500 ARG A 177 -6.90 77.66 REMARK 500 ASP A 178 41.93 -145.06 REMARK 500 ASP A 230 22.04 -146.26 REMARK 500 HIS A 311 57.95 -114.10 REMARK 500 ASP A 314 45.42 -144.55 REMARK 500 ASN B 55 31.26 -91.28 REMARK 500 LEU B 59 -145.22 -120.88 REMARK 500 ASN B 66 -130.63 51.39 REMARK 500 ARG B 177 -17.09 79.17 REMARK 500 ASP B 178 45.93 -140.18 REMARK 500 SER B 215 103.59 53.01 REMARK 500 ASP B 230 22.27 -143.85 REMARK 500 ASP B 314 44.10 -155.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1209 DISTANCE = 6.33 ANGSTROMS DBREF 8UOL A 48 370 UNP P27448 MARK3_HUMAN 48 370 DBREF 8UOL B 48 370 UNP P27448 MARK3_HUMAN 48 370 SEQADV 8UOL GLY A 43 UNP P27448 EXPRESSION TAG SEQADV 8UOL ALA A 44 UNP P27448 EXPRESSION TAG SEQADV 8UOL MET A 45 UNP P27448 EXPRESSION TAG SEQADV 8UOL GLY A 46 UNP P27448 EXPRESSION TAG SEQADV 8UOL SER A 47 UNP P27448 EXPRESSION TAG SEQADV 8UOL LEU A 62 UNP P27448 ILE 62 ENGINEERED MUTATION SEQADV 8UOL ARG A 72 UNP P27448 LEU 72 ENGINEERED MUTATION SEQADV 8UOL ILE A 116 UNP P27448 VAL 116 ENGINEERED MUTATION SEQADV 8UOL LYS A 137 UNP P27448 GLY 137 ENGINEERED MUTATION SEQADV 8UOL TYR A 141 UNP P27448 PHE 141 ENGINEERED MUTATION SEQADV 8UOL GLU A 146 UNP P27448 ALA 146 ENGINEERED MUTATION SEQADV 8UOL GLY B 43 UNP P27448 EXPRESSION TAG SEQADV 8UOL ALA B 44 UNP P27448 EXPRESSION TAG SEQADV 8UOL MET B 45 UNP P27448 EXPRESSION TAG SEQADV 8UOL GLY B 46 UNP P27448 EXPRESSION TAG SEQADV 8UOL SER B 47 UNP P27448 EXPRESSION TAG SEQADV 8UOL LEU B 62 UNP P27448 ILE 62 ENGINEERED MUTATION SEQADV 8UOL ARG B 72 UNP P27448 LEU 72 ENGINEERED MUTATION SEQADV 8UOL ILE B 116 UNP P27448 VAL 116 ENGINEERED MUTATION SEQADV 8UOL LYS B 137 UNP P27448 GLY 137 ENGINEERED MUTATION SEQADV 8UOL TYR B 141 UNP P27448 PHE 141 ENGINEERED MUTATION SEQADV 8UOL GLU B 146 UNP P27448 ALA 146 ENGINEERED MUTATION SEQRES 1 A 328 GLY ALA MET GLY SER ASP GLU GLN PRO HIS ILE GLY ASN SEQRES 2 A 328 TYR ARG LEU LEU LYS THR LEU GLY LYS GLY ASN PHE ALA SEQRES 3 A 328 LYS VAL LYS ARG ALA ARG HIS ILE LEU THR GLY ARG GLU SEQRES 4 A 328 VAL ALA ILE LYS ILE ILE ASP LYS THR GLN LEU ASN PRO SEQRES 5 A 328 THR SER LEU GLN LYS LEU PHE ARG GLU VAL ARG ILE MET SEQRES 6 A 328 LYS ILE LEU ASN HIS PRO ASN ILE ILE LYS LEU PHE GLU SEQRES 7 A 328 VAL ILE GLU THR GLU LYS THR LEU TYR LEU ILE MET GLU SEQRES 8 A 328 TYR ALA SER LYS GLY GLU VAL TYR ASP TYR LEU VAL GLU SEQRES 9 A 328 HIS GLY ARG MET LYS GLU LYS GLU ALA ARG SER LYS PHE SEQRES 10 A 328 ARG GLN ILE VAL SER ALA VAL GLN TYR CYS HIS GLN LYS SEQRES 11 A 328 ARG ILE VAL HIS ARG ASP LEU LYS ALA GLU ASN LEU LEU SEQRES 12 A 328 LEU ASP ALA ASP MET ASN ILE LYS ILE ALA ASP PHE GLY SEQRES 13 A 328 PHE SER ASN GLU PHE THR VAL GLY GLY LYS LEU ASP THR SEQRES 14 A 328 PHE CYS GLY SER PRO PRO TYR ALA ALA PRO GLU LEU PHE SEQRES 15 A 328 GLN GLY LYS LYS TYR ASP GLY PRO GLU VAL ASP VAL TRP SEQRES 16 A 328 SER LEU GLY VAL ILE LEU TYR THR LEU VAL SER GLY SER SEQRES 17 A 328 LEU PRO PHE ASP GLY GLN ASN LEU LYS GLU LEU ARG GLU SEQRES 18 A 328 ARG VAL LEU ARG GLY LYS TYR ARG ILE PRO PHE TYR MET SEQRES 19 A 328 SER THR ASP CYS GLU ASN LEU LEU LYS ARG PHE LEU VAL SEQRES 20 A 328 LEU ASN PRO ILE LYS ARG GLY THR LEU GLU GLN ILE MET SEQRES 21 A 328 LYS ASP ARG TRP ILE ASN ALA GLY HIS GLU GLU ASP GLU SEQRES 22 A 328 LEU LYS PRO PHE VAL GLU PRO GLU LEU ASP ILE SER ASP SEQRES 23 A 328 GLN LYS ARG ILE ASP ILE MET VAL GLY MET GLY TYR SER SEQRES 24 A 328 GLN GLU GLU ILE GLN GLU SER LEU SER LYS MET LYS TYR SEQRES 25 A 328 ASP GLU ILE THR ALA THR TYR LEU LEU LEU GLY ARG LYS SEQRES 26 A 328 SER SER GLU SEQRES 1 B 328 GLY ALA MET GLY SER ASP GLU GLN PRO HIS ILE GLY ASN SEQRES 2 B 328 TYR ARG LEU LEU LYS THR LEU GLY LYS GLY ASN PHE ALA SEQRES 3 B 328 LYS VAL LYS ARG ALA ARG HIS ILE LEU THR GLY ARG GLU SEQRES 4 B 328 VAL ALA ILE LYS ILE ILE ASP LYS THR GLN LEU ASN PRO SEQRES 5 B 328 THR SER LEU GLN LYS LEU PHE ARG GLU VAL ARG ILE MET SEQRES 6 B 328 LYS ILE LEU ASN HIS PRO ASN ILE ILE LYS LEU PHE GLU SEQRES 7 B 328 VAL ILE GLU THR GLU LYS THR LEU TYR LEU ILE MET GLU SEQRES 8 B 328 TYR ALA SER LYS GLY GLU VAL TYR ASP TYR LEU VAL GLU SEQRES 9 B 328 HIS GLY ARG MET LYS GLU LYS GLU ALA ARG SER LYS PHE SEQRES 10 B 328 ARG GLN ILE VAL SER ALA VAL GLN TYR CYS HIS GLN LYS SEQRES 11 B 328 ARG ILE VAL HIS ARG ASP LEU LYS ALA GLU ASN LEU LEU SEQRES 12 B 328 LEU ASP ALA ASP MET ASN ILE LYS ILE ALA ASP PHE GLY SEQRES 13 B 328 PHE SER ASN GLU PHE THR VAL GLY GLY LYS LEU ASP THR SEQRES 14 B 328 PHE CYS GLY SER PRO PRO TYR ALA ALA PRO GLU LEU PHE SEQRES 15 B 328 GLN GLY LYS LYS TYR ASP GLY PRO GLU VAL ASP VAL TRP SEQRES 16 B 328 SER LEU GLY VAL ILE LEU TYR THR LEU VAL SER GLY SER SEQRES 17 B 328 LEU PRO PHE ASP GLY GLN ASN LEU LYS GLU LEU ARG GLU SEQRES 18 B 328 ARG VAL LEU ARG GLY LYS TYR ARG ILE PRO PHE TYR MET SEQRES 19 B 328 SER THR ASP CYS GLU ASN LEU LEU LYS ARG PHE LEU VAL SEQRES 20 B 328 LEU ASN PRO ILE LYS ARG GLY THR LEU GLU GLN ILE MET SEQRES 21 B 328 LYS ASP ARG TRP ILE ASN ALA GLY HIS GLU GLU ASP GLU SEQRES 22 B 328 LEU LYS PRO PHE VAL GLU PRO GLU LEU ASP ILE SER ASP SEQRES 23 B 328 GLN LYS ARG ILE ASP ILE MET VAL GLY MET GLY TYR SER SEQRES 24 B 328 GLN GLU GLU ILE GLN GLU SER LEU SER LYS MET LYS TYR SEQRES 25 B 328 ASP GLU ILE THR ALA THR TYR LEU LEU LEU GLY ARG LYS SEQRES 26 B 328 SER SER GLU HET X4H A 900 32 HET EDO A 901 4 HET EDO A 902 4 HET EDO A 903 4 HET X4H B 900 32 HET EDO B 901 4 HET EDO B 902 4 HET EDO B 903 4 HETNAM X4H NARAZACICLIB HETNAM EDO 1,2-ETHANEDIOL HETSYN X4H 8-CYCLOPENTYL-2-[4-(4-METHYLPIPERAZIN-1-YL)ANILINO]-7- HETSYN 2 X4H OXO-7,8-DIHYDROPYRIDO[2,3-D]PYRIMIDINE-6-CARBONITRILE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 X4H 2(C24 H27 N7 O) FORMUL 4 EDO 6(C2 H6 O2) FORMUL 11 HOH *422(H2 O) HELIX 1 AA1 THR A 90 LEU A 92 5 3 HELIX 2 AA2 ASN A 93 LYS A 108 1 16 HELIX 3 AA3 GLU A 139 GLY A 148 1 10 HELIX 4 AA4 LYS A 151 LYS A 172 1 22 HELIX 5 AA5 LYS A 180 GLU A 182 5 3 HELIX 6 AA6 SER A 200 THR A 204 5 5 HELIX 7 AA7 SER A 215 ALA A 219 5 5 HELIX 8 AA8 PRO A 232 GLY A 249 1 18 HELIX 9 AA9 ASN A 257 GLY A 268 1 12 HELIX 10 AB1 SER A 277 LEU A 288 1 12 HELIX 11 AB2 ASN A 291 ARG A 295 5 5 HELIX 12 AB3 THR A 297 MET A 302 1 6 HELIX 13 AB4 ASP A 304 ALA A 309 1 6 HELIX 14 AB5 ASP A 328 MET A 338 1 11 HELIX 15 AB6 SER A 341 MET A 352 1 12 HELIX 16 AB7 ASP A 355 LEU A 364 1 10 HELIX 17 AB8 THR B 90 LEU B 92 5 3 HELIX 18 AB9 ASN B 93 LYS B 108 1 16 HELIX 19 AC1 GLU B 139 GLY B 148 1 10 HELIX 20 AC2 LYS B 151 LYS B 172 1 22 HELIX 21 AC3 LYS B 180 GLU B 182 5 3 HELIX 22 AC4 SER B 200 THR B 204 5 5 HELIX 23 AC5 SER B 215 ALA B 219 5 5 HELIX 24 AC6 ALA B 220 PHE B 224 5 5 HELIX 25 AC7 GLY B 231 GLY B 249 1 19 HELIX 26 AC8 ASN B 257 GLY B 268 1 12 HELIX 27 AC9 SER B 277 LEU B 288 1 12 HELIX 28 AD1 ASN B 291 ARG B 295 5 5 HELIX 29 AD2 THR B 297 MET B 302 1 6 HELIX 30 AD3 ASP B 304 ALA B 309 1 6 HELIX 31 AD4 ASP B 328 MET B 338 1 11 HELIX 32 AD5 SER B 341 MET B 352 1 12 HELIX 33 AD6 ASP B 355 GLY B 365 1 11 SHEET 1 AA1 6 HIS A 52 ILE A 53 0 SHEET 2 AA1 6 TYR A 56 GLY A 65 -1 O TYR A 56 N ILE A 53 SHEET 3 AA1 6 ALA A 68 HIS A 75 -1 O VAL A 70 N LEU A 62 SHEET 4 AA1 6 GLU A 81 ASP A 88 -1 O ILE A 86 N LYS A 69 SHEET 5 AA1 6 THR A 127 MET A 132 -1 O MET A 132 N ALA A 83 SHEET 6 AA1 6 LEU A 118 GLU A 123 -1 N PHE A 119 O ILE A 131 SHEET 1 AA2 2 LEU A 184 LEU A 186 0 SHEET 2 AA2 2 ILE A 192 ILE A 194 -1 O LYS A 193 N LEU A 185 SHEET 1 AA3 6 HIS B 52 ILE B 53 0 SHEET 2 AA3 6 TYR B 56 GLY B 65 -1 O TYR B 56 N ILE B 53 SHEET 3 AA3 6 ALA B 68 HIS B 75 -1 O ARG B 72 N LYS B 60 SHEET 4 AA3 6 GLU B 81 ASP B 88 -1 O ILE B 86 N LYS B 69 SHEET 5 AA3 6 THR B 127 MET B 132 -1 O MET B 132 N ALA B 83 SHEET 6 AA3 6 LEU B 118 GLU B 123 -1 N GLU B 120 O ILE B 131 SHEET 1 AA4 2 LEU B 184 LEU B 186 0 SHEET 2 AA4 2 ILE B 192 ILE B 194 -1 O LYS B 193 N LEU B 185 CRYST1 51.150 94.880 68.760 90.00 92.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019550 0.000000 0.000870 0.00000 SCALE2 0.000000 0.010540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014558 0.00000 CONECT 5036 5039 5051 5058 CONECT 5037 5053 5061 CONECT 5038 5039 5062 CONECT 5039 5036 5038 CONECT 5040 5041 5052 5062 CONECT 5041 5040 5042 CONECT 5042 5041 5061 CONECT 5043 5052 5061 CONECT 5044 5054 5063 CONECT 5045 5054 5055 CONECT 5046 5055 5064 5067 CONECT 5047 5048 5057 CONECT 5048 5047 5049 CONECT 5049 5048 5059 CONECT 5050 5055 5066 CONECT 5051 5036 CONECT 5052 5040 5043 CONECT 5053 5037 5063 5065 CONECT 5054 5044 5045 5056 CONECT 5055 5045 5046 5050 CONECT 5056 5054 5064 5065 CONECT 5057 5047 5059 5064 CONECT 5058 5036 5060 CONECT 5059 5049 5057 CONECT 5060 5058 5062 CONECT 5061 5037 5042 5043 CONECT 5062 5038 5040 5060 CONECT 5063 5044 5053 CONECT 5064 5046 5056 5057 CONECT 5065 5053 5056 CONECT 5066 5050 CONECT 5067 5046 CONECT 5068 5069 5070 CONECT 5069 5068 CONECT 5070 5068 5071 CONECT 5071 5070 CONECT 5072 5073 5074 CONECT 5073 5072 CONECT 5074 5072 5075 CONECT 5075 5074 CONECT 5076 5077 5078 CONECT 5077 5076 CONECT 5078 5076 5079 CONECT 5079 5078 CONECT 5080 5083 5095 5102 CONECT 5081 5097 5105 CONECT 5082 5083 5106 CONECT 5083 5080 5082 CONECT 5084 5085 5096 5106 CONECT 5085 5084 5086 CONECT 5086 5085 5105 CONECT 5087 5096 5105 CONECT 5088 5098 5107 CONECT 5089 5098 5099 CONECT 5090 5099 5108 5111 CONECT 5091 5092 5101 CONECT 5092 5091 5093 CONECT 5093 5092 5103 CONECT 5094 5099 5110 CONECT 5095 5080 CONECT 5096 5084 5087 CONECT 5097 5081 5107 5109 CONECT 5098 5088 5089 5100 CONECT 5099 5089 5090 5094 CONECT 5100 5098 5108 5109 CONECT 5101 5091 5103 5108 CONECT 5102 5080 5104 CONECT 5103 5093 5101 CONECT 5104 5102 5106 CONECT 5105 5081 5086 5087 CONECT 5106 5082 5084 5104 CONECT 5107 5088 5097 CONECT 5108 5090 5100 5101 CONECT 5109 5097 5100 CONECT 5110 5094 CONECT 5111 5090 CONECT 5112 5113 5114 CONECT 5113 5112 CONECT 5114 5112 5115 CONECT 5115 5114 CONECT 5116 5117 5118 CONECT 5117 5116 CONECT 5118 5116 5119 CONECT 5119 5118 CONECT 5120 5121 5122 CONECT 5121 5120 CONECT 5122 5120 5123 CONECT 5123 5122 MASTER 453 0 8 33 16 0 0 6 5535 2 88 52 END