HEADER PEPTIDE BINDING PROTEIN 22-OCT-23 8UPI TITLE STRUCTURE OF A PERIPLASMIC PEPTIDE BINDING PROTEIN FROM MESORHIZOBIUM TITLE 2 SP. AP09 BOUND TO AMINOSERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM SP. AP09; SOURCE 3 ORGANISM_TAXID: 2135476; SOURCE 4 GENE: MESOLJ113B_06930; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ABC-TRANSPORTER-ASSOCIATED PERIPLASMIC BINDING PROTEIN, PEPTIDE KEYWDS 2 BINDING PROTEIN, AMINO ACID BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.L.FRKIC,O.B.SMITH,M.RAHMAN,J.A.KACZMARSKI,C.J.JACKSON REVDAT 4 23-OCT-24 8UPI 1 REMARK REVDAT 3 05-JUN-24 8UPI 1 JRNL REVDAT 2 22-MAY-24 8UPI 1 JRNL REVDAT 1 08-NOV-23 8UPI 0 JRNL AUTH O.B.SMITH,R.L.FRKIC,M.G.RAHMAN,C.J.JACKSON,J.A.KACZMARSKI JRNL TITL IDENTIFICATION AND CHARACTERIZATION OF A BACTERIAL JRNL TITL 2 PERIPLASMIC SOLUTE BINDING PROTEIN THAT BINDS L-AMINO ACID JRNL TITL 3 AMIDES. JRNL REF BIOCHEMISTRY V. 63 1322 2024 JRNL REFN ISSN 0006-2960 JRNL PMID 38696389 JRNL DOI 10.1021/ACS.BIOCHEM.4C00096 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 66819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 3419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.5100 - 4.4600 0.99 2866 166 0.1400 0.1772 REMARK 3 2 4.4500 - 3.5400 0.98 2730 123 0.1277 0.1680 REMARK 3 3 3.5400 - 3.1000 0.99 2727 134 0.1475 0.1958 REMARK 3 4 3.1000 - 2.8100 1.00 2710 148 0.1638 0.1865 REMARK 3 5 2.8100 - 2.6100 1.00 2746 118 0.1641 0.2075 REMARK 3 6 2.6100 - 2.4600 1.00 2680 150 0.1733 0.2070 REMARK 3 7 2.4600 - 2.3400 1.00 2689 147 0.1740 0.2137 REMARK 3 8 2.3400 - 2.2300 0.93 2527 128 0.2267 0.3103 REMARK 3 9 2.2300 - 2.1500 0.95 2524 139 0.2029 0.2978 REMARK 3 10 2.1500 - 2.0700 1.00 2703 116 0.1663 0.2221 REMARK 3 11 2.0700 - 2.0100 1.00 2669 146 0.1778 0.2213 REMARK 3 12 2.0100 - 1.9500 0.99 2660 140 0.1871 0.2296 REMARK 3 13 1.9500 - 1.9000 0.96 2551 151 0.2859 0.3273 REMARK 3 14 1.9000 - 1.8500 0.92 2453 139 0.2280 0.2960 REMARK 3 15 1.8500 - 1.8100 1.00 2648 146 0.1887 0.2290 REMARK 3 16 1.8100 - 1.7700 1.00 2683 139 0.1876 0.2421 REMARK 3 17 1.7700 - 1.7400 1.00 2626 154 0.1897 0.2529 REMARK 3 18 1.7400 - 1.7100 1.00 2658 146 0.2070 0.2894 REMARK 3 19 1.7100 - 1.6800 0.99 2645 145 0.2159 0.2726 REMARK 3 20 1.6800 - 1.6500 0.99 2628 154 0.2253 0.2746 REMARK 3 21 1.6500 - 1.6200 0.98 2589 170 0.2271 0.2504 REMARK 3 22 1.6200 - 1.6000 0.98 2567 146 0.2420 0.3159 REMARK 3 23 1.6000 - 1.5700 0.97 2583 133 0.2498 0.3263 REMARK 3 24 1.5700 - 1.5500 0.95 2538 141 0.2825 0.3057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 NULL REMARK 3 ANGLE : 0.801 NULL REMARK 3 CHIRALITY : 0.052 599 REMARK 3 PLANARITY : 0.009 771 REMARK 3 DIHEDRAL : 6.270 579 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2794 -3.7929 7.1287 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.0560 REMARK 3 T33: 0.0628 T12: -0.0025 REMARK 3 T13: -0.0021 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.2781 L22: 0.2669 REMARK 3 L33: 0.6060 L12: 0.0607 REMARK 3 L13: 0.0050 L23: -0.0306 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: 0.0501 S13: -0.0291 REMARK 3 S21: -0.0084 S22: 0.0248 S23: -0.0279 REMARK 3 S31: 0.0418 S32: -0.0488 S33: -0.0025 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0779 -1.4372 11.8489 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.1045 REMARK 3 T33: 0.0988 T12: 0.0227 REMARK 3 T13: 0.0003 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.7416 L22: 1.4740 REMARK 3 L33: 0.9062 L12: 0.3486 REMARK 3 L13: 0.4404 L23: 0.1464 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: -0.0119 S13: -0.0399 REMARK 3 S21: 0.0807 S22: -0.0161 S23: -0.1370 REMARK 3 S31: 0.0284 S32: 0.0789 S33: 0.0273 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7364 8.7049 31.0985 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.0777 REMARK 3 T33: 0.1152 T12: 0.0310 REMARK 3 T13: -0.0386 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 2.0192 L22: 0.5737 REMARK 3 L33: 1.2612 L12: 0.4971 REMARK 3 L13: -0.7498 L23: -0.3807 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0499 S13: 0.0932 REMARK 3 S21: 0.0175 S22: 0.0395 S23: -0.1073 REMARK 3 S31: -0.0195 S32: 0.0437 S33: -0.0396 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4670 13.7296 38.7342 REMARK 3 T TENSOR REMARK 3 T11: 0.1697 T22: 0.0855 REMARK 3 T33: 0.1131 T12: 0.0264 REMARK 3 T13: -0.0375 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 0.6131 L22: 0.4288 REMARK 3 L33: 2.4921 L12: 0.2234 REMARK 3 L13: -0.0982 L23: -0.0357 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: -0.1392 S13: 0.0255 REMARK 3 S21: 0.0909 S22: 0.0347 S23: -0.0701 REMARK 3 S31: -0.1683 S32: -0.1567 S33: -0.0068 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2132 -0.1128 32.7157 REMARK 3 T TENSOR REMARK 3 T11: 0.1212 T22: 0.0948 REMARK 3 T33: 0.1196 T12: 0.0246 REMARK 3 T13: -0.0443 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.5881 L22: 0.6046 REMARK 3 L33: 1.3286 L12: 0.2617 REMARK 3 L13: 0.2502 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: -0.0836 S13: -0.0540 REMARK 3 S21: 0.1580 S22: 0.0081 S23: -0.1946 REMARK 3 S31: 0.0351 S32: 0.0781 S33: -0.0271 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 443 THROUGH 478 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5762 13.1642 22.7442 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.0721 REMARK 3 T33: 0.0947 T12: 0.0438 REMARK 3 T13: -0.0057 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.9822 L22: 2.0133 REMARK 3 L33: 3.3146 L12: 0.2003 REMARK 3 L13: 0.6109 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: 0.0104 S13: 0.1315 REMARK 3 S21: -0.0390 S22: 0.1251 S23: 0.0573 REMARK 3 S31: -0.2756 S32: -0.0923 S33: -0.0638 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 479 THROUGH 520 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5813 9.2903 15.5604 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.1090 REMARK 3 T33: 0.1186 T12: 0.0213 REMARK 3 T13: -0.0145 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.0647 L22: 0.0325 REMARK 3 L33: 1.0828 L12: -0.0000 REMARK 3 L13: -0.1950 L23: 0.1404 REMARK 3 S TENSOR REMARK 3 S11: -0.0707 S12: -0.0458 S13: 0.1339 REMARK 3 S21: 0.0103 S22: 0.0530 S23: -0.0871 REMARK 3 S31: 0.0490 S32: 0.1599 S33: 0.0272 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : AGILENT SUPERNOVA REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67507 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.12350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.67750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.67750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.12350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 ASP A 6 REMARK 465 PRO A 7 REMARK 465 ASN A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 ASP A 521 REMARK 465 VAL A 522 REMARK 465 GLN A 523 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 396 O HOH A 701 2.14 REMARK 500 O GLY A 399 O HOH A 701 2.15 REMARK 500 OE2 GLU A 202 O HOH A 702 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1246 O HOH A 1249 4445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 14.47 -153.25 REMARK 500 ASP A 49 -155.34 -145.85 REMARK 500 ASP A 60 -92.28 -118.00 REMARK 500 GLN A 197 -50.84 -132.96 REMARK 500 ARG A 308 23.54 -77.80 REMARK 500 ALA A 400 83.93 60.96 REMARK 500 MET A 408 -40.02 -130.79 REMARK 500 TYR A 421 -83.36 -110.34 REMARK 500 VAL A 508 -61.21 -120.10 REMARK 500 PRO A 511 -112.84 40.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 510 PRO A 511 -145.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1551 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1552 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1553 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A1554 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A1555 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1556 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1557 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1558 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A1559 DISTANCE = 7.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 41 O REMARK 620 2 PHE A 44 O 73.8 REMARK 620 3 ASP A 45 OD1 150.2 81.1 REMARK 620 4 HOH A 780 O 142.0 134.9 67.8 REMARK 620 5 HOH A 801 O 84.7 102.0 85.1 106.8 REMARK 620 6 HOH A 832 O 79.1 152.9 125.4 68.9 77.1 REMARK 620 7 HOH A1096 O 86.8 85.6 107.3 74.1 166.5 91.0 REMARK 620 N 1 2 3 4 5 6 DBREF 8UPI A 1 523 PDB 8UPI 8UPI 1 523 SEQRES 1 A 523 GLY GLU ASP THR ILE ASP PRO ASN ALA LYS GLN GLY GLY SEQRES 2 A 523 ALA ILE THR ILE THR TYR LYS ASP ASP VAL ALA THR LEU SEQRES 3 A 523 ASP PRO ALA ILE GLY TYR ASP TRP GLN ASN TRP SER MET SEQRES 4 A 523 ILE LYS SER LEU PHE ASP GLY LEU MET ASP TYR GLU PRO SEQRES 5 A 523 GLY THR THR ASN LEU LYS PRO ASP LEU ALA GLU SER TYR SEQRES 6 A 523 GLU ILE SER PRO ASP GLY LYS THR PHE THR PHE LYS LEU SEQRES 7 A 523 ARG HIS GLY VAL LYS PHE HIS ASN GLY ARG GLU MET THR SEQRES 8 A 523 ALA ASP ASP VAL LYS TYR SER LEU ASP ARG VAL THR ASN SEQRES 9 A 523 PRO LYS THR GLN SER PRO GLY ALA GLY PHE PHE GLY SER SEQRES 10 A 523 ILE LYS GLY TYR ASP ASP VAL ALA ALA GLY LYS ALA THR SEQRES 11 A 523 SER LEU SER GLY VAL THR VAL VAL ASP PRO TYR THR VAL SEQRES 12 A 523 LYS PHE GLU LEU THR ARG PRO ASP ALA THR PHE LEU HIS SEQRES 13 A 523 VAL MET ALA ILE ASN PHE SER HIS VAL VAL PRO LYS GLU SEQRES 14 A 523 GLU VAL GLU LYS TYR GLY ALA ASP PHE GLY LYS HIS PRO SEQRES 15 A 523 VAL GLY THR GLY ALA PHE LYS LEU ALA GLU TRP THR LEU SEQRES 16 A 523 GLY GLN ARG ILE VAL PHE GLU ARG ASN PRO ASP TYR TRP SEQRES 17 A 523 HIS LYS GLY LEU PRO HIS LEU ASP LYS ILE THR PHE GLU SEQRES 18 A 523 ILE GLY GLN GLU PRO ILE VAL ALA LEU LEU ARG LEU GLN SEQRES 19 A 523 LYS GLY GLU ILE ASP VAL PRO GLY ASP GLY ILE PRO PRO SEQRES 20 A 523 ALA LYS PHE GLN GLU VAL MET ALA ASP PRO GLU GLN LYS SEQRES 21 A 523 ALA ARG VAL VAL GLU GLY GLY GLN LEU HIS THR GLY TYR SEQRES 22 A 523 VAL THR MET ASN THR THR MET ALA PRO PHE ASP ASN VAL SEQRES 23 A 523 LYS VAL ARG GLN ALA VAL ASN MET ALA ILE ASN LYS ALA SEQRES 24 A 523 ARG ILE ILE GLN ILE ILE ASN GLY ARG ALA VAL PRO ALA SEQRES 25 A 523 ASN GLN PRO LEU PRO PRO SER MET PRO GLY TYR ASP LYS SEQRES 26 A 523 GLU TYR LYS GLY TYR PRO TYR ASP VAL ALA LYS ALA LYS SEQRES 27 A 523 ALA LEU LEU ALA GLU ALA GLY HIS PRO ASP GLY PHE GLU SEQRES 28 A 523 THR GLN LEU PHE ALA MET ASN THR ASP PRO ASN PRO ARG SEQRES 29 A 523 ILE ALA GLN ALA ILE GLN GLN ASP LEU ALA ALA ILE GLY SEQRES 30 A 523 ILE LYS ALA SER ILE GLN SER LEU ALA GLN ALA ASN VAL SEQRES 31 A 523 ILE ALA ALA GLY GLY ASP LYS ALA GLY ALA PRO MET ILE SEQRES 32 A 523 TRP SER GLY GLY MET ALA TRP ILE ALA ASP PHE PRO ASP SEQRES 33 A 523 PRO SER ASN PHE TYR GLY PRO ILE LEU GLY CYS ALA GLY SEQRES 34 A 523 ALA VAL PRO GLY GLY TRP ASN TRP SER TRP TYR CYS ASN SEQRES 35 A 523 LYS ASP LEU ASP ALA LYS ALA ALA GLU ALA ASP SER VAL SEQRES 36 A 523 VAL ASP PRO ALA LYS GLY ALA GLU ARG ASP LYS MET TRP SEQRES 37 A 523 SER ALA ILE TYR ASP LYS VAL MET GLU ASP ALA PRO TRP SEQRES 38 A 523 ALA PRO VAL PHE ASN GLU GLN ARG PHE THR MET LYS SER SEQRES 39 A 523 ALA ARG MET GLY GLY ALA ASP ASN LEU TYR VAL ASP PRO SEQRES 40 A 523 VAL HIS ILE PRO ILE ASN TYR ASP ASN VAL TYR VAL LYS SEQRES 41 A 523 ASP VAL GLN HET CA A 601 1 HET EDO A 602 4 HET SET A 603 7 HET EDO A 604 10 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SET AMINOSERINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA CA 2+ FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 SET C3 H8 N2 O2 FORMUL 6 HOH *859(H2 O) HELIX 1 AA1 ASN A 36 PHE A 44 1 9 HELIX 2 AA2 THR A 91 ASN A 104 1 14 HELIX 3 AA3 PRO A 105 GLN A 108 5 4 HELIX 4 AA4 GLY A 111 GLY A 116 5 6 HELIX 5 AA5 GLY A 120 ALA A 126 1 7 HELIX 6 AA6 THR A 153 MET A 158 1 6 HELIX 7 AA7 ILE A 160 HIS A 164 5 5 HELIX 8 AA8 PRO A 167 GLY A 175 1 9 HELIX 9 AA9 ALA A 176 HIS A 181 5 6 HELIX 10 AB1 GLU A 225 LYS A 235 1 11 HELIX 11 AB2 PRO A 246 ASP A 256 1 11 HELIX 12 AB3 ASP A 256 ALA A 261 1 6 HELIX 13 AB4 ASN A 285 MET A 294 1 10 HELIX 14 AB5 ASN A 297 ILE A 305 1 9 HELIX 15 AB6 ASP A 333 ALA A 344 1 12 HELIX 16 AB7 PRO A 361 ILE A 376 1 16 HELIX 17 AB8 ALA A 386 GLY A 395 1 10 HELIX 18 AB9 ASP A 416 TYR A 421 5 6 HELIX 19 AC1 GLY A 426 ALA A 430 5 5 HELIX 20 AC2 ASN A 442 SER A 454 1 13 HELIX 21 AC3 ASP A 457 ALA A 459 5 3 HELIX 22 AC4 LYS A 460 ALA A 479 1 20 HELIX 23 AC5 ALA A 500 TYR A 504 5 5 SHEET 1 AA1 5 PHE A 188 THR A 194 0 SHEET 2 AA1 5 ARG A 198 ARG A 203 -1 O VAL A 200 N ALA A 191 SHEET 3 AA1 5 LYS A 217 ILE A 222 -1 O PHE A 220 N ILE A 199 SHEET 4 AA1 5 ALA A 14 TYR A 19 1 N ILE A 17 O THR A 219 SHEET 5 AA1 5 VAL A 240 PRO A 241 1 O VAL A 240 N THR A 18 SHEET 1 AA2 2 MET A 48 TYR A 50 0 SHEET 2 AA2 2 LEU A 57 PRO A 59 -1 O LYS A 58 N ASP A 49 SHEET 1 AA3 4 ALA A 62 ILE A 67 0 SHEET 2 AA3 4 THR A 73 LEU A 78 -1 O LYS A 77 N GLU A 63 SHEET 3 AA3 4 THR A 142 GLU A 146 -1 O PHE A 145 N PHE A 74 SHEET 4 AA3 4 VAL A 135 ASP A 139 -1 N THR A 136 O LYS A 144 SHEET 1 AA4 2 VAL A 263 GLY A 266 0 SHEET 2 AA4 2 ARG A 489 MET A 492 -1 O THR A 491 N VAL A 264 SHEET 1 AA5 6 ALA A 309 PRO A 311 0 SHEET 2 AA5 6 TRP A 481 GLU A 487 -1 O ASN A 486 N VAL A 310 SHEET 3 AA5 6 GLY A 272 MET A 276 -1 N GLY A 272 O PHE A 485 SHEET 4 AA5 6 MET A 402 TRP A 404 -1 O ILE A 403 N THR A 275 SHEET 5 AA5 6 PHE A 350 MET A 357 1 N PHE A 355 O TRP A 404 SHEET 6 AA5 6 ILE A 378 LEU A 385 1 O SER A 381 N LEU A 354 SHEET 1 AA6 2 MET A 497 GLY A 498 0 SHEET 2 AA6 2 TYR A 518 VAL A 519 -1 O TYR A 518 N GLY A 498 SSBOND 1 CYS A 427 CYS A 441 1555 1555 2.04 LINK O LYS A 41 CA CA A 601 1555 1555 2.30 LINK O PHE A 44 CA CA A 601 1555 1555 2.38 LINK OD1 ASP A 45 CA CA A 601 1555 1555 2.42 LINK CA CA A 601 O HOH A 780 1555 1555 2.47 LINK CA CA A 601 O HOH A 801 1555 1555 2.51 LINK CA CA A 601 O HOH A 832 1555 1555 2.43 LINK CA CA A 601 O HOH A1096 1555 1555 2.39 CISPEP 1 LEU A 212 PRO A 213 0 -6.86 CISPEP 2 ALA A 281 PRO A 282 0 8.16 CISPEP 3 ASP A 360 PRO A 361 0 9.54 CISPEP 4 ALA A 409 TRP A 410 0 -1.61 CRYST1 56.247 58.920 139.355 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017779 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007176 0.00000