data_8UPT # _entry.id 8UPT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8UPT pdb_00008upt 10.2210/pdb8upt/pdb WWPDB D_1000278479 ? ? EMDB EMD-42455 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-01-10 2 'Structure model' 1 1 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' 5 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8UPT _pdbx_database_status.recvd_initial_deposition_date 2023-10-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Candidatus Methanomethylophilus alvus tRNAPyl in A-site of ribosome' _pdbx_database_related.db_id EMD-42455 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email dieter.soll@yale.edu _pdbx_contact_author.name_first Dieter _pdbx_contact_author.name_last Soll _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3077-8986 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Krahn, N.' 1 0000-0003-0696-433X 'Zhang, J.' 2 ? 'Melnikov, S.V.' 3 ? 'Tharp, J.M.' 4 0000-0002-2362-3249 'Villa, A.' 5 ? 'Patel, A.' 6 ? 'Howard, R.J.' 7 0000-0003-2049-3378 'Gabir, H.' 8 ? 'Patel, T.R.' 9 0000-0003-0627-2923 'Stetefeld, J.' 10 0000-0003-1478-3248 'Puglisi, J.' 11 ? 'Soll, D.' 12 0000-0002-3077-8986 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 513 _citation.page_last 524 _citation.title 'tRNA shape is an identity element for an archaeal pyrrolysyl-tRNA synthetase from the human gut.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkad1188 _citation.pdbx_database_id_PubMed 38100361 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Krahn, N.' 1 ? primary 'Zhang, J.' 2 ? primary 'Melnikov, S.V.' 3 ? primary 'Tharp, J.M.' 4 ? primary 'Villa, A.' 5 ? primary 'Patel, A.' 6 ? primary 'Howard, R.J.' 7 ? primary 'Gabir, H.' 8 ? primary 'Patel, T.R.' 9 ? primary 'Stetefeld, J.' 10 ? primary 'Puglisi, J.' 11 ? primary 'Soll, D.' 12 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'RNA (71-MER)' _entity.formula_weight 22897.654 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGGGACGGUCCGGCGACCAGCGGGUCUCUAAAACCUAGCCAGCGGGGUUCGACGCCCCGGUCUCUCGCCA _entity_poly.pdbx_seq_one_letter_code_can GGGGGACGGUCCGGCGACCAGCGGGUCUCUAAAACCUAGCCAGCGGGGUUCGACGCCCCGGUCUCUCGCCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 G n 1 5 G n 1 6 A n 1 7 C n 1 8 G n 1 9 G n 1 10 U n 1 11 C n 1 12 C n 1 13 G n 1 14 G n 1 15 C n 1 16 G n 1 17 A n 1 18 C n 1 19 C n 1 20 A n 1 21 G n 1 22 C n 1 23 G n 1 24 G n 1 25 G n 1 26 U n 1 27 C n 1 28 U n 1 29 C n 1 30 U n 1 31 A n 1 32 A n 1 33 A n 1 34 A n 1 35 C n 1 36 C n 1 37 U n 1 38 A n 1 39 G n 1 40 C n 1 41 C n 1 42 A n 1 43 G n 1 44 C n 1 45 G n 1 46 G n 1 47 G n 1 48 G n 1 49 U n 1 50 U n 1 51 C n 1 52 G n 1 53 A n 1 54 C n 1 55 G n 1 56 C n 1 57 C n 1 58 C n 1 59 C n 1 60 G n 1 61 G n 1 62 U n 1 63 C n 1 64 U n 1 65 C n 1 66 U n 1 67 C n 1 68 G n 1 69 C n 1 70 C n 1 71 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 71 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene pylT _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Candidatus Methanomethylophilus alvus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1291540 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 10 10 G G A . n A 1 9 G 9 11 11 G G A . n A 1 10 U 10 12 12 U U A . n A 1 11 C 11 13 13 C C A . n A 1 12 C 12 15 15 C C A . n A 1 13 G 13 17 17 G G A . n A 1 14 G 14 18 18 G G A . n A 1 15 C 15 20 20 C C A . n A 1 16 G 16 22 22 G G A . n A 1 17 A 17 23 23 A A A . n A 1 18 C 18 24 24 C C A . n A 1 19 C 19 25 25 C C A . n A 1 20 A 20 25 25 A A A A n A 1 21 G 21 26 26 G G A . n A 1 22 C 22 27 27 C C A . n A 1 23 G 23 28 28 G G A . n A 1 24 G 24 29 29 G G A . n A 1 25 G 25 30 30 G G A . n A 1 26 U 26 31 31 U U A . n A 1 27 C 27 32 32 C C A . n A 1 28 U 28 33 33 U U A . n A 1 29 C 29 34 34 C C A . n A 1 30 U 30 35 35 U U A . n A 1 31 A 31 36 36 A A A . n A 1 32 A 32 37 37 A A A . n A 1 33 A 33 38 38 A A A . n A 1 34 A 34 39 39 A A A . n A 1 35 C 35 40 40 C C A . n A 1 36 C 36 41 41 C C A . n A 1 37 U 37 42 42 U U A . n A 1 38 A 38 42 42 A A A A n A 1 39 G 39 43 43 G G A . n A 1 40 C 40 44 44 C C A . n A 1 41 C 41 45 45 C C A . n A 1 42 A 42 47 47 A A A . n A 1 43 G 43 48 48 G G A . n A 1 44 C 44 49 49 C C A . n A 1 45 G 45 50 50 G G A . n A 1 46 G 46 51 51 G G A . n A 1 47 G 47 52 52 G G A . n A 1 48 G 48 53 53 G G A . n A 1 49 U 49 54 54 U U A . n A 1 50 U 50 55 55 U U A . n A 1 51 C 51 56 56 C C A . n A 1 52 G 52 57 57 G G A . n A 1 53 A 53 58 58 A A A . n A 1 54 C 54 59 59 C C A . n A 1 55 G 55 60 60 G G A . n A 1 56 C 56 61 61 C C A . n A 1 57 C 57 62 62 C C A . n A 1 58 C 58 63 63 C C A . n A 1 59 C 59 64 64 C C A . n A 1 60 G 60 65 65 G G A . n A 1 61 G 61 66 66 G G A . n A 1 62 U 62 67 67 U U A . n A 1 63 C 63 68 68 C C A . n A 1 64 U 64 69 69 U U A . n A 1 65 C 65 70 70 C C A . n A 1 66 U 66 71 71 U U A . n A 1 67 C 67 72 72 C C A . n A 1 68 G 68 73 73 G G A . n A 1 69 C 69 74 74 C C A . n A 1 70 C 70 75 75 C C A . n A 1 71 A 71 76 76 A A A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8UPT _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8UPT _struct.title 'Candidatus Methanomethylophilus alvus tRNAPyl in A-site of ribosome' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8UPT _struct_keywords.text 'tRNA, pyrrolysine, translation, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code LR699000.1 _struct_ref.pdbx_db_accession 1721134198 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GGGGGACGGUCCGGCGACCAGCGGGUCUCUAAAACCUAGCCAGCGGGGUUCGACGCCCCGGUCUCUCGCCA _struct_ref.pdbx_align_begin 1115720 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8UPT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 71 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1721134198 _struct_ref_seq.db_align_beg 1115720 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1115650 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 67 O2 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 67 N3 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog3 hydrog ? ? A G 2 N2 ? ? ? 1_555 A U 66 O2 ? ? A G 2 A U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 65 O2 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 65 N3 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog6 hydrog ? ? A G 4 N2 ? ? ? 1_555 A U 64 O2 ? ? A G 4 A U 69 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog7 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 63 N3 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog8 hydrog ? ? A A 6 N1 ? ? ? 1_555 A G 61 N1 ? ? A A 6 A G 66 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog9 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 62 O4 ? ? A A 6 A U 67 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog10 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 61 N1 ? ? A C 7 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 61 O6 ? ? A C 7 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 61 N2 ? ? A C 7 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog14 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 18 O2 ? ? A G 11 A C 24 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog15 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 17 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 17 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 50 O2 ? ? A G 17 A U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog21 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 18 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 18 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 18 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 16 N7 ? ? ? 1_555 A G 43 N1 ? ? A G 22 A G 48 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog25 hydrog ? ? A G 16 O6 ? ? ? 1_555 A G 43 N2 ? ? A G 22 A G 48 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog26 hydrog ? ? A A 17 N6 ? ? ? 1_555 A A 42 N1 ? ? A A 23 A A 47 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog27 hydrog ? ? A G 21 N1 ? ? ? 1_555 A G 39 O6 ? ? A G 26 A G 43 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 26 A C 44 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog29 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog30 hydrog ? ? A G 23 N2 ? ? ? 1_555 A U 37 O2 ? ? A G 28 A U 42 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog31 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 60 N1 ? ? A C 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 60 O6 ? ? A C 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 60 N2 ? ? A C 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 50 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 50 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 50 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 46 N1 ? ? ? 1_555 A C 59 O2 ? ? A G 51 A C 64 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog44 hydrog ? ? A G 46 N2 ? ? ? 1_555 A C 59 N3 ? ? A G 51 A C 64 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog45 hydrog ? ? A G 47 N1 ? ? ? 1_555 A C 57 O2 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog46 hydrog ? ? A G 47 N2 ? ? ? 1_555 A C 57 N3 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog47 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 56 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog48 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 56 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog49 hydrog ? ? A U 49 N3 ? ? ? 1_555 A A 53 N7 ? ? A U 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? A U 49 O2 ? ? ? 1_555 A A 53 N6 ? ? A U 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O2'" A G 17 ? ? N2 A G 57 ? ? 1.07 2 1 O6 A G 11 ? ? O2 A C 24 ? ? 1.10 3 1 O6 A G 53 ? ? N4 A C 61 ? ? 1.17 4 1 N1 A A 6 ? ? O2 A U 67 ? ? 1.31 5 1 "O2'" A G 17 ? ? C2 A G 57 ? ? 1.33 6 1 N4 A C 15 ? ? N3 A C 59 ? ? 1.43 7 1 N3 A C 15 ? ? N4 A C 59 ? ? 1.45 8 1 O6 A G 1 ? ? N4 A C 72 ? ? 1.51 9 1 C2 A C 15 ? ? N4 A C 59 ? ? 1.52 10 1 O6 A G 5 ? ? N3 A C 68 ? ? 1.52 11 1 "O4'" A C 45 ? ? OP2 A G 48 ? ? 1.53 12 1 O6 A G 5 ? ? N4 A C 68 ? ? 1.54 13 1 O6 A G 4 ? ? N3 A U 69 ? ? 1.55 14 1 O6 A G 5 ? ? C4 A C 68 ? ? 1.58 15 1 C4 A C 15 ? ? N3 A C 59 ? ? 1.60 16 1 N3 A C 15 ? ? C4 A C 59 ? ? 1.60 17 1 N1 A G 5 ? ? N3 A C 68 ? ? 1.63 18 1 N1 A G 17 ? ? O2 A U 55 ? ? 1.69 19 1 N4 A C 15 ? ? C2 A C 59 ? ? 1.70 20 1 N1 A G 3 ? ? N3 A C 70 ? ? 1.71 21 1 C6 A G 5 ? ? N3 A C 68 ? ? 1.72 22 1 C2 A A 6 ? ? O2 A U 67 ? ? 1.73 23 1 O6 A G 3 ? ? N4 A C 70 ? ? 1.75 24 1 O6 A G 2 ? ? N3 A U 71 ? ? 1.76 25 1 N1 A A 6 ? ? C2 A U 67 ? ? 1.79 26 1 "C1'" A C 45 ? ? OP2 A G 48 ? ? 1.79 27 1 N1 A G 53 ? ? N3 A C 61 ? ? 1.85 28 1 N1 A G 5 ? ? O2 A C 68 ? ? 1.88 29 1 OP2 A G 17 ? ? N2 A G 60 ? ? 1.90 30 1 N2 A G 3 ? ? O2 A C 70 ? ? 1.90 31 1 N6 A A 6 ? ? N3 A U 67 ? ? 1.92 32 1 N3 A C 15 ? ? N3 A C 59 ? ? 1.94 33 1 N4 A C 15 ? ? O2 A C 59 ? ? 1.96 34 1 O2 A C 15 ? ? N4 A C 59 ? ? 1.97 35 1 "O2'" A G 17 ? ? N1 A G 57 ? ? 1.97 36 1 N1 A G 5 ? ? C2 A C 68 ? ? 1.98 37 1 N1 A A 6 ? ? N3 A U 67 ? ? 2.01 38 1 O6 A G 1 ? ? O6 A G 73 ? ? 2.02 39 1 "C2'" A G 17 ? ? N2 A G 57 ? ? 2.04 40 1 N1 A G 2 ? ? O2 A U 71 ? ? 2.04 41 1 N1 A G 4 ? ? O2 A U 69 ? ? 2.05 42 1 O6 A G 1 ? ? C6 A G 73 ? ? 2.05 43 1 N2 A G 5 ? ? O2 A C 68 ? ? 2.06 44 1 C6 A G 11 ? ? O2 A C 24 ? ? 2.08 45 1 C6 A A 6 ? ? N3 A U 67 ? ? 2.08 46 1 N6 A A 6 ? ? O6 A G 66 ? ? 2.08 47 1 N2 A G 17 ? ? "O5'" A A 58 ? ? 2.10 48 1 O6 A G 10 ? ? N4 A C 25 ? ? 2.16 49 1 C6 A G 53 ? ? N4 A C 61 ? ? 2.17 50 1 N1 A G 1 ? ? N3 A C 72 ? ? 2.18 51 1 O6 A G 1 ? ? C4 A C 72 ? ? 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 53 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 53 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.490 _pdbx_validate_rmsd_bond.bond_target_value 1.415 _pdbx_validate_rmsd_bond.bond_deviation 0.075 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A C 7 ? ? "C3'" A C 7 ? ? "O3'" A C 7 ? ? 128.80 113.00 15.80 2.00 N 2 1 "C3'" A G 18 ? ? "O3'" A G 18 ? ? P A C 20 ? ? 131.58 119.70 11.88 1.20 Y 3 1 "C2'" A C 25 ? ? "C3'" A C 25 ? ? "O3'" A C 25 ? ? 126.25 113.70 12.55 1.60 N 4 1 "C1'" A U 33 ? ? "O4'" A U 33 ? ? "C4'" A U 33 ? ? 104.44 109.70 -5.26 0.70 N 5 1 "C3'" A A 38 ? ? "O3'" A A 38 ? ? P A A 39 ? ? 109.86 119.70 -9.84 1.20 Y 6 1 "C3'" A A 47 ? ? "O3'" A A 47 ? ? P A G 48 ? ? 112.37 119.70 -7.33 1.20 Y 7 1 "C1'" A G 53 ? ? "O4'" A G 53 ? ? "C4'" A G 53 ? ? 102.83 109.70 -6.87 0.70 N 8 1 "C1'" A G 57 ? ? "O4'" A G 57 ? ? "C4'" A G 57 ? ? 104.65 109.70 -5.05 0.70 N 9 1 "C1'" A C 59 ? ? "O4'" A C 59 ? ? "C4'" A C 59 ? ? 104.02 109.70 -5.68 0.70 N 10 1 "C1'" A C 70 ? ? "O4'" A C 70 ? ? "C4'" A C 70 ? ? 104.33 109.70 -5.37 0.70 N 11 1 "C2'" A C 70 ? ? "C3'" A C 70 ? ? "O3'" A C 70 ? ? 127.74 113.70 14.04 1.60 N 12 1 "C2'" A U 71 ? ? "C3'" A U 71 ? ? "O3'" A U 71 ? ? 129.42 113.70 15.72 1.60 N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8UPT _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8UPT _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 2386471 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Complex of tRNAPyl in the A-site of the E. coli ribosome' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8UPT _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8UPT _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'blot for 3 seconds before plunging' # _em_experiment.entry_id 8UPT _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state '3D ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 905931 _em_entity_assembly_naturalsource.organism 'in vitro transcription vector pT7-TP(deltai)' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 905931 _em_entity_assembly_recombinant.organism 'in vitro transcription vector pT7-TP(deltai)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8UPT 'double helix' 8UPT 'a-form double helix' 8UPT 'parallel strands' 8UPT 'hairpin loop' 8UPT 'bulge loop' 8UPT 'mismatched base pair' 8UPT 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 67 1_555 0.019 -1.585 -1.245 10.984 -1.820 -23.116 1 A_G1:C72_A A 1 ? A 72 ? 22 1 1 A G 2 1_555 A U 66 1_555 -1.433 -1.601 -0.378 7.286 -19.155 -4.003 2 A_G2:U71_A A 2 ? A 71 ? ? ? 1 A G 3 1_555 A C 65 1_555 -0.371 -1.464 -0.071 0.592 -19.583 -0.738 3 A_G3:C70_A A 3 ? A 70 ? 22 1 1 A G 4 1_555 A U 64 1_555 -2.162 -2.039 -0.937 4.646 -13.086 -9.021 4 A_G4:U69_A A 4 ? A 69 ? ? ? 1 A G 5 1_555 A C 63 1_555 -0.726 -2.114 0.376 -0.100 -16.409 -15.661 5 A_G5:C68_A A 5 ? A 68 ? ? 3 1 A A 6 1_555 A U 62 1_555 -1.202 -2.132 1.051 -2.931 -27.440 -3.010 6 A_A6:U67_A A 6 ? A 67 ? ? 1 1 A C 7 1_555 A G 61 1_555 0.058 0.096 0.060 -3.066 -0.592 9.787 7 A_C7:G66_A A 7 ? A 66 ? 19 1 1 A C 44 1_555 A G 60 1_555 0.332 -0.049 0.939 -20.694 0.719 -6.978 8 A_C49:G65_A A 49 ? A 65 ? 19 1 1 A G 45 1_555 A C 59 1_555 -0.315 0.414 -0.932 -13.399 -20.032 10.155 9 A_G50:C64_A A 50 ? A 64 ? 19 1 1 A G 47 1_555 A C 57 1_555 -0.383 0.485 -0.127 -5.380 -9.246 19.390 10 A_G52:C62_A A 52 ? A 62 ? 22 1 1 A G 48 1_555 A C 56 1_555 0.330 -1.259 -0.246 -14.866 -3.787 -16.945 11 A_G53:C61_A A 53 ? A 61 ? 22 1 1 A U 49 1_555 A A 53 1_555 4.272 -1.970 0.443 2.375 11.689 -108.674 12 A_U54:A58_A A 54 ? A 58 ? 24 4 1 A U 50 1_555 A G 13 1_555 0.143 -4.277 0.080 27.533 -7.644 -96.783 13 A_U55:G17_A A 55 ? A 17 ? ? ? 1 A G 16 1_555 A C 11 1_555 -1.653 -0.663 -0.743 -10.976 -29.812 -4.194 14 A_G22:C13_A A 22 ? A 13 ? 19 1 1 A A 17 1_555 A U 10 1_555 2.162 -0.186 -0.532 2.943 -7.872 -22.408 15 A_A23:U12_A A 23 ? A 12 ? 20 1 1 A C 18 1_555 A G 9 1_555 4.277 -3.758 0.313 11.895 -16.004 -38.644 16 A_C24:G11_A A 24 ? A 11 ? ? 6 1 A C 19 1_555 A G 8 1_555 0.373 -0.620 -0.179 -28.393 9.076 -13.658 17 A_C25:G10_A A 25 ? A 10 ? ? 1 1 A G 21 1_555 A C 40 1_555 0.864 0.290 0.974 -3.462 2.153 14.286 18 A_G26:C44_A A 26 ? A 44 ? ? 1 1 A C 22 1_555 A G 39 1_555 2.200 0.596 1.191 20.335 -16.593 27.770 19 A_C27:G43_A A 27 ? A 43 ? ? 1 1 A G 23 1_555 A U 37 1_555 -0.154 0.056 0.847 5.857 -13.358 10.253 20 A_G28:U42_A A 28 ? A 42 ? ? 1 1 A G 24 1_555 A C 36 1_555 0.464 0.069 -0.740 -12.699 -6.257 -16.185 21 A_G29:C41_A A 29 ? A 41 ? 19 1 1 A G 25 1_555 A C 35 1_555 1.183 0.274 1.193 -0.047 -7.302 0.556 22 A_G30:C40_A A 30 ? A 40 ? 19 1 1 A G 14 1_555 A C 51 1_555 -0.880 0.232 0.435 -10.845 -15.306 3.510 23 A_G18:C56_A A 18 ? A 56 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 67 1_555 A G 2 1_555 A U 66 1_555 0.431 -1.183 3.761 -7.098 4.958 30.470 -3.184 -2.245 3.349 9.202 13.174 31.649 1 AA_G1G2:U71C72_AA A 1 ? A 72 ? A 2 ? A 71 ? 1 A G 2 1_555 A U 66 1_555 A G 3 1_555 A C 65 1_555 0.368 -1.239 3.528 -4.131 3.350 41.301 -2.119 -0.980 3.371 4.725 5.827 41.627 2 AA_G2G3:C70U71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A G 3 1_555 A C 65 1_555 A G 4 1_555 A U 64 1_555 0.397 -2.114 2.796 0.332 10.617 21.632 -7.487 -0.877 1.600 26.340 -0.823 24.071 3 AA_G3G4:U69C70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A G 4 1_555 A U 64 1_555 A G 5 1_555 A C 63 1_555 -0.308 -1.384 3.645 -4.255 -3.388 37.241 -1.645 -0.153 3.763 -5.271 6.620 37.622 4 AA_G4G5:C68U69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A G 5 1_555 A C 63 1_555 A A 6 1_555 A U 62 1_555 0.981 -2.071 3.166 -3.098 9.489 35.527 -4.404 -1.921 2.460 15.185 4.958 36.859 5 AA_G5A6:U67C68_AA A 5 ? A 68 ? A 6 ? A 67 ? 1 A A 6 1_555 A U 62 1_555 A C 7 1_555 A G 61 1_555 -0.019 -0.764 2.916 2.645 10.961 44.859 -1.785 0.220 2.664 14.102 -3.402 46.183 6 AA_A6C7:G66U67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A C 7 1_555 A G 61 1_555 A C 44 1_555 A G 60 1_555 -0.673 -2.312 3.171 -7.257 13.875 34.908 -5.051 0.238 2.219 21.823 11.414 38.159 7 AA_C7C49:G65G66_AA A 7 ? A 66 ? A 49 ? A 65 ? 1 A C 44 1_555 A G 60 1_555 A G 45 1_555 A C 59 1_555 -0.478 -2.112 2.984 12.871 5.839 29.837 -4.548 2.659 2.161 10.623 -23.415 32.947 8 AA_C49G50:C64G65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A G 45 1_555 A C 59 1_555 A G 47 1_555 A C 57 1_555 0.968 -2.658 6.247 -6.303 14.828 59.746 -3.849 -1.478 5.400 14.599 6.206 61.686 9 AA_G50G52:C62C64_AA A 50 ? A 64 ? A 52 ? A 62 ? 1 A G 47 1_555 A C 57 1_555 A G 48 1_555 A C 56 1_555 -0.506 -1.948 3.567 1.222 2.606 37.635 -3.371 0.951 3.412 4.032 -1.891 37.741 10 AA_G52G53:C61C62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 48 1_555 A C 56 1_555 A U 49 1_555 A A 53 1_555 -1.584 -2.049 3.179 -0.254 1.176 92.107 -1.444 1.095 3.162 0.817 0.177 92.113 11 AA_G53U54:A58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A U 49 1_555 A A 53 1_555 A U 50 1_555 A G 13 1_555 2.183 -2.418 2.896 8.437 1.522 37.441 -3.858 -2.327 3.198 2.334 -12.936 38.376 12 AA_U54U55:G17A58_AA A 54 ? A 58 ? A 55 ? A 17 ? 1 A G 16 1_555 A C 11 1_555 A A 17 1_555 A U 10 1_555 -0.333 -1.176 3.166 -3.533 3.882 48.884 -1.693 0.146 3.085 4.675 4.255 49.148 13 AA_G22A23:U12C13_AA A 22 ? A 13 ? A 23 ? A 12 ? 1 A A 17 1_555 A U 10 1_555 A C 18 1_555 A G 9 1_555 0.340 -1.916 2.848 -8.275 0.882 23.461 -4.673 -2.889 2.510 2.086 19.578 24.874 14 AA_A23C24:G11U12_AA A 23 ? A 12 ? A 24 ? A 11 ? 1 A C 18 1_555 A G 9 1_555 A C 19 1_555 A G 8 1_555 0.689 -3.135 4.425 20.741 9.398 31.106 -6.298 2.329 3.224 15.232 -33.616 38.383 15 AA_C24C25:G10G11_AA A 24 ? A 11 ? A 25 ? A 10 ? 1 A C 19 1_555 A G 8 1_555 A G 21 1_555 A C 40 1_555 4.678 -2.244 4.840 -0.982 28.563 95.065 -2.149 -3.116 4.191 19.038 0.655 98.270 16 AA_C25G26:C44G10_AA A 25 ? A 10 ? A 26 ? A 44 ? 1 A G 21 1_555 A C 40 1_555 A C 22 1_555 A G 39 1_555 -0.073 -0.584 3.141 -0.132 14.734 27.872 -3.617 0.111 2.522 28.229 0.253 31.459 17 AA_G26C27:G43C44_AA A 26 ? A 44 ? A 27 ? A 43 ? 1 A C 22 1_555 A G 39 1_555 A G 23 1_555 A U 37 1_555 1.201 -1.592 5.303 -18.438 22.816 51.931 -3.364 -2.632 3.785 24.011 19.404 59.139 18 AA_C27G28:U42G43_AA A 27 ? A 43 ? A 28 ? A 42 ? 1 A G 23 1_555 A U 37 1_555 A G 24 1_555 A C 36 1_555 -1.428 -1.624 4.447 9.139 -2.258 30.553 -2.412 4.779 3.972 -4.163 -16.847 31.937 19 AA_G28G29:C41U42_AA A 28 ? A 42 ? A 29 ? A 41 ? 1 A G 24 1_555 A C 36 1_555 A G 25 1_555 A C 35 1_555 1.589 -1.552 2.918 -12.158 9.328 41.859 -2.725 -2.979 2.030 12.562 16.373 44.458 20 AA_G29G30:C40C41_AA A 29 ? A 41 ? A 30 ? A 40 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'R35 GM122560' 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'R35 GM122560-05S1' 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM51266 3 'Department of Energy (DOE, United States)' 'United States' DE-FG0298ER2031 4 'Cystic Fibrosis Foundation' 'United States' PUGLIS20G0 5 'Knut and Alice Wallenberg Foundation' Sweden 'KAW 2016.0488' 6 # _atom_sites.entry_id 8UPT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_