HEADER TRANSFERASE 23-OCT-23 8UQ9 TITLE CRYSTAL STRUCTURE OF RNF168 (RING)-UBCH5C FUSED TO H2A-H2B VIA A 4- TITLE 2 RESIDUE LINKER COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF168,UBIQUITIN-CONJUGATING COMPND 3 ENZYME E2 D3,HISTONE H2B TYPE 2-E,HISTONE H2A TYPE 1-B/E; COMPND 4 CHAIN: A, a; COMPND 5 EC: 2.3.2.27,2.3.2.23,2.3.2.24; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: RESIDUES 1-94 OF RNF168, FOLLOWED BY RESIDUES 2-147 OF COMPND 8 UBCH5C, FOLLOWED BY RESIDUES 33-123 OF H2B, FOLLOWED BY RESIDUES 12- COMPND 9 105 OF H2A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF168, UBE2D3, UBC5C, UBCH5C, H2BC21, H2BFQ, HIST2H2BE, SOURCE 6 H2AC4, H2AFM, HIST1H2AB, H2AC8, H2AFA, HIST1H2AE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNF168, UBCH5C, HISTONE H2A, HISTONE H2B, CHROMATIN, UBIQUITIN KEYWDS 2 LIGASE, UBIQUITIN-CONJUGATING ENZYME, DNA DAMAGE RESPONSE, DNA KEYWDS 3 DOUBLE-STRAND BREAK REPAIR, PROTEIN BINDING, PROTEIN BINDING- KEYWDS 4 TRANSFERASE COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.HU,M.V.BOTUYAN,G.MER REVDAT 3 20-MAR-24 8UQ9 1 JRNL REVDAT 2 31-JAN-24 8UQ9 1 JRNL REVDAT 1 17-JAN-24 8UQ9 0 JRNL AUTH Q.HU,D.ZHAO,G.CUI,J.BHANDARI,J.R.THOMPSON,M.V.BOTUYAN,G.MER JRNL TITL MECHANISMS OF RNF168 NUCLEOSOME RECOGNITION AND JRNL TITL 2 UBIQUITYLATION. JRNL REF MOL.CELL V. 84 839 2024 JRNL REFN ISSN 1097-2765 JRNL PMID 38242129 JRNL DOI 10.1016/J.MOLCEL.2023.12.036 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 65992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1800 - 5.6700 0.99 4256 129 0.1729 0.1952 REMARK 3 2 5.6700 - 4.5000 1.00 4256 136 0.1515 0.1604 REMARK 3 3 4.5000 - 3.9300 1.00 4259 133 0.1481 0.1476 REMARK 3 4 3.9300 - 3.5700 1.00 4289 144 0.1643 0.1628 REMARK 3 5 3.5700 - 3.3200 1.00 4270 140 0.1736 0.2549 REMARK 3 6 3.3200 - 3.1200 1.00 4245 140 0.2029 0.2015 REMARK 3 7 3.1200 - 2.9700 1.00 4251 136 0.2205 0.2740 REMARK 3 8 2.9700 - 2.8400 1.00 4280 136 0.2071 0.2403 REMARK 3 9 2.8400 - 2.7300 1.00 4293 133 0.2026 0.2316 REMARK 3 10 2.7300 - 2.6300 1.00 4235 132 0.2136 0.3074 REMARK 3 11 2.6300 - 2.5500 1.00 4308 138 0.2246 0.2585 REMARK 3 12 2.5500 - 2.4800 1.00 4263 136 0.2126 0.2592 REMARK 3 13 2.4800 - 2.4100 1.00 4270 132 0.2149 0.2893 REMARK 3 14 2.4100 - 2.3500 1.00 4260 134 0.2193 0.2337 REMARK 3 15 2.3500 - 2.3000 0.99 4224 134 0.2321 0.2507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6937 REMARK 3 ANGLE : 0.524 9398 REMARK 3 CHIRALITY : 0.038 1051 REMARK 3 PLANARITY : 0.004 1206 REMARK 3 DIHEDRAL : 5.075 975 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000278536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66052 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.09166 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.63940 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4GB0, 5EGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE OBTAINED BY MIXING 2 REMARK 280 MICROLITERS OF THE PROTEIN FUSION (8.8 MG/ML) IN 10 MM HEPES, PH REMARK 280 7.5, 600 MM NACL, 1 MM TCEP AND 2 MICROLITERS OF THE RESERVOIR REMARK 280 SOLUTION CONTAINING 0.1 M HEPES, PH 7.5, 2.4 M NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.00333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.00667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: a REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 465 ILE A 3102 REMARK 465 ALA A 3103 REMARK 465 GLN A 3104 REMARK 465 GLY A 3105 REMARK 465 GLY a -1 REMARK 465 THR a 3101 REMARK 465 ILE a 3102 REMARK 465 ALA a 3103 REMARK 465 GLN a 3104 REMARK 465 GLY a 3105 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 67 CZ NH1 NH2 REMARK 470 LYS A 89 CE NZ REMARK 470 LYS A1004 CE NZ REMARK 470 ARG A2033 CG CD NE CZ NH1 NH2 REMARK 470 LYS A2085 CG CD CE NZ REMARK 470 ARG A2086 CG CD NE CZ NH1 NH2 REMARK 470 LYS A2120 CE NZ REMARK 470 LYS a 89 CG CD CE NZ REMARK 470 LYS a1004 CE NZ REMARK 470 LYS a1066 CG CD CE NZ REMARK 470 LYS a1144 CG CD CE NZ REMARK 470 ARG a3099 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 6 OD1 OD2 REMARK 480 LYS A 46 CD CE NZ REMARK 480 LYS A 89 CG CD REMARK 480 GLY A 100 C REMARK 480 ARG A 2033 CA CB REMARK 480 LYS A 2057 CD REMARK 480 LYS A 2085 CB REMARK 480 ARG A 3088 CD NE CZ NH1 NH2 REMARK 480 ARG a 1015 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 -96.41 -125.86 REMARK 500 ARG A1090 -76.13 -139.24 REMARK 500 ASP A1130 70.72 -152.50 REMARK 500 ALA a 47 -74.71 -127.37 REMARK 500 ASP a1042 57.16 -91.04 REMARK 500 ARG a1090 -74.85 -133.55 REMARK 500 ASP a1130 68.47 -152.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A5235 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4011 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 16 SG REMARK 620 2 CYS A 19 SG 106.0 REMARK 620 3 CYS A 36 SG 112.4 111.0 REMARK 620 4 CYS A 39 SG 114.1 111.9 101.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A4010 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 SG REMARK 620 2 HIS A 33 ND1 109.1 REMARK 620 3 CYS A 51 SG 107.7 115.8 REMARK 620 4 CYS A 54 SG 105.1 109.8 108.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA a4023 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1117 OD1 REMARK 620 2 ASP A1117 OD2 53.9 REMARK 620 3 ARG a2099 O 122.9 74.3 REMARK 620 4 LEU a2102 O 123.6 75.6 1.8 REMARK 620 5 HOH a5092 O 121.0 72.7 1.9 2.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A4023 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A2040 OH REMARK 620 2 HOH A5033 O 119.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA a4019 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A2099 O REMARK 620 2 LEU A2102 O 99.0 REMARK 620 3 HOH A5118 O 68.4 36.0 REMARK 620 4 ASP a1117 OD1 66.0 37.5 2.6 REMARK 620 5 ASP a1117 OD2 66.6 37.6 1.8 1.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN a4013 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS a 16 SG REMARK 620 2 CYS a 19 SG 107.6 REMARK 620 3 CYS a 36 SG 112.6 112.2 REMARK 620 4 CYS a 39 SG 114.6 108.5 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN a4012 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS a 31 SG REMARK 620 2 HIS a 33 ND1 106.1 REMARK 620 3 CYS a 51 SG 109.8 117.3 REMARK 620 4 CYS a 54 SG 104.0 109.9 109.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA a4009 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER a 59 OG REMARK 620 2 SER a 60 OG 115.1 REMARK 620 3 HIS a 83 O 49.3 72.1 REMARK 620 N 1 2 DBREF 8UQ9 A 1 94 UNP Q8IYW5 RN168_HUMAN 1 94 DBREF 8UQ9 A 1002 1147 UNP P61077 UB2D3_HUMAN 2 147 DBREF 8UQ9 A 2033 2123 UNP Q16778 H2B2E_HUMAN 34 124 DBREF 8UQ9 A 3012 3105 UNP P04908 H2A1B_HUMAN 13 106 DBREF 8UQ9 a 1 94 UNP Q8IYW5 RN168_HUMAN 1 94 DBREF 8UQ9 a 1002 1147 UNP P61077 UB2D3_HUMAN 2 147 DBREF 8UQ9 a 2033 2123 UNP Q16778 H2B2E_HUMAN 34 124 DBREF 8UQ9 a 3012 3105 UNP P04908 H2A1B_HUMAN 13 106 SEQADV 8UQ9 GLY A -1 UNP Q8IYW5 EXPRESSION TAG SEQADV 8UQ9 HIS A 0 UNP Q8IYW5 EXPRESSION TAG SEQADV 8UQ9 SER A 95 UNP Q8IYW5 LINKER SEQADV 8UQ9 GLY A 96 UNP Q8IYW5 LINKER SEQADV 8UQ9 SER A 97 UNP Q8IYW5 LINKER SEQADV 8UQ9 GLY A 98 UNP Q8IYW5 LINKER SEQADV 8UQ9 SER A 99 UNP Q8IYW5 LINKER SEQADV 8UQ9 GLY A 100 UNP Q8IYW5 LINKER SEQADV 8UQ9 SER A 101 UNP Q8IYW5 LINKER SEQADV 8UQ9 GLY A 1148 UNP P61077 LINKER SEQADV 8UQ9 SER A 1149 UNP P61077 LINKER SEQADV 8UQ9 GLY A 1150 UNP P61077 LINKER SEQADV 8UQ9 GLY A 1151 UNP P61077 LINKER SEQADV 8UQ9 SER A 3011 UNP Q16778 LINKER SEQADV 8UQ9 GLY a -1 UNP Q8IYW5 EXPRESSION TAG SEQADV 8UQ9 HIS a 0 UNP Q8IYW5 EXPRESSION TAG SEQADV 8UQ9 SER a 95 UNP Q8IYW5 LINKER SEQADV 8UQ9 GLY a 96 UNP Q8IYW5 LINKER SEQADV 8UQ9 SER a 97 UNP Q8IYW5 LINKER SEQADV 8UQ9 GLY a 98 UNP Q8IYW5 LINKER SEQADV 8UQ9 SER a 99 UNP Q8IYW5 LINKER SEQADV 8UQ9 GLY a 100 UNP Q8IYW5 LINKER SEQADV 8UQ9 SER a 101 UNP Q8IYW5 LINKER SEQADV 8UQ9 GLY a 1148 UNP P61077 LINKER SEQADV 8UQ9 SER a 1149 UNP P61077 LINKER SEQADV 8UQ9 GLY a 1150 UNP P61077 LINKER SEQADV 8UQ9 GLY a 1151 UNP P61077 LINKER SEQADV 8UQ9 SER a 3011 UNP Q16778 LINKER SEQRES 1 A 439 GLY HIS MET ALA LEU PRO LYS ASP ALA ILE PRO SER LEU SEQRES 2 A 439 SER GLU CYS GLN CYS GLY ILE CYS MET GLU ILE LEU VAL SEQRES 3 A 439 GLU PRO VAL THR LEU PRO CYS ASN HIS THR LEU CYS LYS SEQRES 4 A 439 PRO CYS PHE GLN SER THR VAL GLU LYS ALA SER LEU CYS SEQRES 5 A 439 CYS PRO PHE CYS ARG ARG ARG VAL SER SER TRP THR ARG SEQRES 6 A 439 TYR HIS THR ARG ARG ASN SER LEU VAL ASN VAL GLU LEU SEQRES 7 A 439 TRP THR ILE ILE GLN LYS HIS TYR PRO ARG GLU CYS LYS SEQRES 8 A 439 LEU ARG ALA SER GLY SER GLY SER GLY SER GLY SER ALA SEQRES 9 A 439 LEU LYS ARG ILE ASN LYS GLU LEU SER ASP LEU ALA ARG SEQRES 10 A 439 ASP PRO PRO ALA GLN CYS SER ALA GLY PRO VAL GLY ASP SEQRES 11 A 439 ASP MET PHE HIS TRP GLN ALA THR ILE MET GLY PRO ASN SEQRES 12 A 439 ASP SER PRO TYR GLN GLY GLY VAL PHE PHE LEU THR ILE SEQRES 13 A 439 HIS PHE PRO THR ASP TYR PRO PHE LYS PRO PRO LYS VAL SEQRES 14 A 439 ALA PHE THR THR ARG ILE TYR HIS PRO ASN ILE ASN SER SEQRES 15 A 439 ASN GLY SER ILE CYS LEU ASP ILE LEU ARG SER GLN TRP SEQRES 16 A 439 SER PRO ALA LEU THR ILE SER LYS VAL LEU LEU SER ILE SEQRES 17 A 439 CYS SER LEU LEU CYS ASP PRO ASN PRO ASP ASP PRO LEU SEQRES 18 A 439 VAL PRO GLU ILE ALA ARG ILE TYR LYS THR ASP ARG ASP SEQRES 19 A 439 LYS TYR ASN ARG ILE SER ARG GLU TRP THR GLN LYS TYR SEQRES 20 A 439 ALA MET GLY SER GLY GLY ARG LYS GLU SER TYR SER ILE SEQRES 21 A 439 TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR SEQRES 22 A 439 GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER PHE SEQRES 23 A 439 VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SER SEQRES 24 A 439 ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SER SEQRES 25 A 439 ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY SEQRES 26 A 439 GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA SEQRES 27 A 439 VAL THR LYS TYR THR SER SER ALA LYS ALA LYS THR ARG SEQRES 28 A 439 SER SER ARG ALA GLY LEU GLN PHE PRO VAL GLY ARG VAL SEQRES 29 A 439 HIS ARG LEU LEU ARG LYS GLY ASN TYR SER GLU ARG VAL SEQRES 30 A 439 GLY ALA GLY ALA PRO VAL TYR LEU ALA ALA VAL LEU GLU SEQRES 31 A 439 TYR LEU THR ALA GLU ILE LEU GLU LEU ALA GLY ASN ALA SEQRES 32 A 439 ALA ARG ASP ASN LYS LYS THR ARG ILE ILE PRO ARG HIS SEQRES 33 A 439 LEU GLN LEU ALA ILE ARG ASN ASP GLU GLU LEU ASN LYS SEQRES 34 A 439 LEU LEU GLY ARG VAL THR ILE ALA GLN GLY SEQRES 1 a 439 GLY HIS MET ALA LEU PRO LYS ASP ALA ILE PRO SER LEU SEQRES 2 a 439 SER GLU CYS GLN CYS GLY ILE CYS MET GLU ILE LEU VAL SEQRES 3 a 439 GLU PRO VAL THR LEU PRO CYS ASN HIS THR LEU CYS LYS SEQRES 4 a 439 PRO CYS PHE GLN SER THR VAL GLU LYS ALA SER LEU CYS SEQRES 5 a 439 CYS PRO PHE CYS ARG ARG ARG VAL SER SER TRP THR ARG SEQRES 6 a 439 TYR HIS THR ARG ARG ASN SER LEU VAL ASN VAL GLU LEU SEQRES 7 a 439 TRP THR ILE ILE GLN LYS HIS TYR PRO ARG GLU CYS LYS SEQRES 8 a 439 LEU ARG ALA SER GLY SER GLY SER GLY SER GLY SER ALA SEQRES 9 a 439 LEU LYS ARG ILE ASN LYS GLU LEU SER ASP LEU ALA ARG SEQRES 10 a 439 ASP PRO PRO ALA GLN CYS SER ALA GLY PRO VAL GLY ASP SEQRES 11 a 439 ASP MET PHE HIS TRP GLN ALA THR ILE MET GLY PRO ASN SEQRES 12 a 439 ASP SER PRO TYR GLN GLY GLY VAL PHE PHE LEU THR ILE SEQRES 13 a 439 HIS PHE PRO THR ASP TYR PRO PHE LYS PRO PRO LYS VAL SEQRES 14 a 439 ALA PHE THR THR ARG ILE TYR HIS PRO ASN ILE ASN SER SEQRES 15 a 439 ASN GLY SER ILE CYS LEU ASP ILE LEU ARG SER GLN TRP SEQRES 16 a 439 SER PRO ALA LEU THR ILE SER LYS VAL LEU LEU SER ILE SEQRES 17 a 439 CYS SER LEU LEU CYS ASP PRO ASN PRO ASP ASP PRO LEU SEQRES 18 a 439 VAL PRO GLU ILE ALA ARG ILE TYR LYS THR ASP ARG ASP SEQRES 19 a 439 LYS TYR ASN ARG ILE SER ARG GLU TRP THR GLN LYS TYR SEQRES 20 a 439 ALA MET GLY SER GLY GLY ARG LYS GLU SER TYR SER ILE SEQRES 21 a 439 TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR SEQRES 22 a 439 GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER PHE SEQRES 23 a 439 VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SER SEQRES 24 a 439 ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SER SEQRES 25 a 439 ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY SEQRES 26 a 439 GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA SEQRES 27 a 439 VAL THR LYS TYR THR SER SER ALA LYS ALA LYS THR ARG SEQRES 28 a 439 SER SER ARG ALA GLY LEU GLN PHE PRO VAL GLY ARG VAL SEQRES 29 a 439 HIS ARG LEU LEU ARG LYS GLY ASN TYR SER GLU ARG VAL SEQRES 30 a 439 GLY ALA GLY ALA PRO VAL TYR LEU ALA ALA VAL LEU GLU SEQRES 31 a 439 TYR LEU THR ALA GLU ILE LEU GLU LEU ALA GLY ASN ALA SEQRES 32 a 439 ALA ARG ASP ASN LYS LYS THR ARG ILE ILE PRO ARG HIS SEQRES 33 a 439 LEU GLN LEU ALA ILE ARG ASN ASP GLU GLU LEU ASN LYS SEQRES 34 a 439 LEU LEU GLY ARG VAL THR ILE ALA GLN GLY HET CL A4001 1 HET CL A4002 1 HET CL A4003 1 HET CL A4004 1 HET CL A4005 1 HET CL A4006 1 HET GOL A4007 6 HET GOL A4008 6 HET GOL A4009 6 HET ZN A4010 1 HET ZN A4011 1 HET CL A4012 1 HET CL A4013 1 HET CL A4014 1 HET CL A4015 1 HET CL A4016 1 HET CL A4017 1 HET CL A4018 1 HET CL A4019 1 HET CL A4020 1 HET CL A4021 1 HET CL A4022 1 HET NA A4023 1 HET CL a4001 1 HET CL a4002 1 HET CL a4003 1 HET CL a4004 1 HET CL a4005 1 HET CL a4006 1 HET CL a4007 1 HET CL a4008 1 HET NA a4009 1 HET GOL a4010 6 HET GOL a4011 6 HET ZN a4012 1 HET ZN a4013 1 HET CL a4014 1 HET CL a4015 1 HET CL a4016 1 HET CL a4017 1 HET CL a4018 1 HET NA a4019 1 HET CL a4020 1 HET CL a4021 1 HET CL a4022 1 HET NA a4023 1 HET GOL a4024 6 HET CL a4025 1 HET CL a4026 1 HET CL a4027 1 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 36(CL 1-) FORMUL 9 GOL 6(C3 H8 O3) FORMUL 12 ZN 4(ZN 2+) FORMUL 25 NA 4(NA 1+) FORMUL 53 HOH *479(H2 O) HELIX 1 AA1 PRO A 4 ILE A 8 5 5 HELIX 2 AA2 LEU A 11 GLN A 15 5 5 HELIX 3 AA3 CYS A 36 VAL A 44 1 9 HELIX 4 AA4 VAL A 58 ARG A 68 1 11 HELIX 5 AA5 ASN A 73 TYR A 84 1 12 HELIX 6 AA6 TYR A 84 ARG A 91 1 8 HELIX 7 AA7 SER A 101 ASP A 1016 1 16 HELIX 8 AA8 LEU A 1086 ARG A 1090 5 5 HELIX 9 AA9 THR A 1098 ASP A 1112 1 15 HELIX 10 AB1 VAL A 1120 ASP A 1130 1 11 HELIX 11 AB2 ASP A 1130 ALA A 1146 1 17 HELIX 12 AB3 TYR A 2037 HIS A 2049 1 13 HELIX 13 AB4 SER A 2055 ASN A 2084 1 30 HELIX 14 AB5 THR A 2090 LEU A 2102 1 13 HELIX 15 AB6 PRO A 2103 SER A 2123 1 21 HELIX 16 AB7 THR A 3016 GLY A 3022 1 7 HELIX 17 AB8 PRO A 3026 GLY A 3037 1 12 HELIX 18 AB9 ALA A 3045 ASN A 3073 1 29 HELIX 19 AC1 ILE A 3079 ASP A 3090 1 12 HELIX 20 AC2 ASP A 3090 GLY A 3098 1 9 HELIX 21 AC3 PRO a 4 ILE a 8 5 5 HELIX 22 AC4 LEU a 11 GLN a 15 5 5 HELIX 23 AC5 CYS a 36 VAL a 44 1 9 HELIX 24 AC6 VAL a 58 ARG a 68 1 11 HELIX 25 AC7 ASN a 73 TYR a 84 1 12 HELIX 26 AC8 TYR a 84 ARG a 91 1 8 HELIX 27 AC9 SER a 101 ASP a 1016 1 16 HELIX 28 AD1 LEU a 1086 ARG a 1090 5 5 HELIX 29 AD2 THR a 1098 ASP a 1112 1 15 HELIX 30 AD3 VAL a 1120 ASP a 1130 1 11 HELIX 31 AD4 ASP a 1130 ALA a 1146 1 17 HELIX 32 AD5 TYR a 2037 HIS a 2049 1 13 HELIX 33 AD6 SER a 2055 ASN a 2084 1 30 HELIX 34 AD7 THR a 2090 LEU a 2102 1 13 HELIX 35 AD8 PRO a 2103 SER a 2123 1 21 HELIX 36 AD9 THR a 3016 GLY a 3022 1 7 HELIX 37 AE1 PRO a 3026 GLY a 3037 1 12 HELIX 38 AE2 ALA a 3045 ASN a 3073 1 29 HELIX 39 AE3 ILE a 3079 ASP a 3090 1 12 HELIX 40 AE4 ASP a 3090 GLY a 3098 1 9 SHEET 1 AA1 2 VAL A 27 THR A 28 0 SHEET 2 AA1 2 THR A 34 LEU A 35 -1 O LEU A 35 N VAL A 27 SHEET 1 AA2 4 SER A1022 PRO A1025 0 SHEET 2 AA2 4 HIS A1032 MET A1038 -1 O THR A1036 N SER A1022 SHEET 3 AA2 4 VAL A1049 HIS A1055 -1 O ILE A1054 N TRP A1033 SHEET 4 AA2 4 LYS A1066 PHE A1069 -1 O LYS A1066 N HIS A1055 SHEET 1 AA3 2 GLY A2053 ILE A2054 0 SHEET 2 AA3 2 ARG A3077 ILE A3078 1 O ILE A3078 N GLY A2053 SHEET 1 AA4 2 THR A2088 ILE A2089 0 SHEET 2 AA4 2 ARG A3042 VAL A3043 1 O ARG A3042 N ILE A2089 SHEET 1 AA5 2 VAL a 27 THR a 28 0 SHEET 2 AA5 2 THR a 34 LEU a 35 -1 O LEU a 35 N VAL a 27 SHEET 1 AA6 4 CYS a1021 PRO a1025 0 SHEET 2 AA6 4 HIS a1032 MET a1038 -1 O THR a1036 N SER a1022 SHEET 3 AA6 4 VAL a1049 HIS a1055 -1 O ILE a1054 N TRP a1033 SHEET 4 AA6 4 LYS a1066 PHE a1069 -1 O LYS a1066 N HIS a1055 SHEET 1 AA7 2 GLY a2053 ILE a2054 0 SHEET 2 AA7 2 ARG a3077 ILE a3078 1 O ILE a3078 N GLY a2053 SHEET 1 AA8 2 THR a2088 ILE a2089 0 SHEET 2 AA8 2 ARG a3042 VAL a3043 1 O ARG a3042 N ILE a2089 LINK SG CYS A 16 ZN ZN A4011 1555 1555 2.32 LINK SG CYS A 19 ZN ZN A4011 1555 1555 2.31 LINK SG CYS A 31 ZN ZN A4010 1555 1555 2.26 LINK ND1 HIS A 33 ZN ZN A4010 1555 1555 2.05 LINK SG CYS A 36 ZN ZN A4011 1555 1555 2.33 LINK SG CYS A 39 ZN ZN A4011 1555 1555 2.25 LINK SG CYS A 51 ZN ZN A4010 1555 1555 2.31 LINK SG CYS A 54 ZN ZN A4010 1555 1555 2.34 LINK OD1 ASP A1117 NA NA a4023 1555 3554 2.36 LINK OD2 ASP A1117 NA NA a4023 1555 3554 2.48 LINK OH TYR A2040 NA NA A4023 1555 1555 2.49 LINK O ARG A2099 NA NA a4019 1555 3555 2.33 LINK O LEU A2102 NA NA a4019 1555 3555 2.26 LINK NA NA A4023 O HOH A5033 1555 1555 2.52 LINK O HOH A5118 NA NA a4019 2554 1555 2.33 LINK SG CYS a 16 ZN ZN a4013 1555 1555 2.31 LINK SG CYS a 19 ZN ZN a4013 1555 1555 2.30 LINK SG CYS a 31 ZN ZN a4012 1555 1555 2.25 LINK ND1 HIS a 33 ZN ZN a4012 1555 1555 1.99 LINK SG CYS a 36 ZN ZN a4013 1555 1555 2.32 LINK SG CYS a 39 ZN ZN a4013 1555 1555 2.30 LINK SG CYS a 51 ZN ZN a4012 1555 1555 2.34 LINK SG CYS a 54 ZN ZN a4012 1555 1555 2.36 LINK OG SER a 59 NA NA a4009 1555 1555 2.65 LINK OG SER a 60 NA NA a4009 1555 1555 2.89 LINK O HIS a 83 NA NA a4009 1555 2665 2.81 LINK OD1 ASP a1117 NA NA a4019 1555 1555 2.41 LINK OD2 ASP a1117 NA NA a4019 1555 1555 2.43 LINK O ARG a2099 NA NA a4023 1555 1555 2.34 LINK O LEU a2102 NA NA a4023 1555 1555 2.35 LINK NA NA a4023 O HOH a5092 1555 1555 2.33 CISPEP 1 TYR A 1060 PRO A 1061 0 10.60 CISPEP 2 TYR a 1060 PRO a 1061 0 9.56 CRYST1 108.135 108.135 114.010 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009248 0.005339 0.000000 0.00000 SCALE2 0.000000 0.010678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008771 0.00000