HEADER LIPID TRANSPORT 25-OCT-23 8UR1 TITLE CRYSTAL STRUCTURE N-ACETYLNEURAMINATE LYASE (NANA) FROM KLEBSIELLA TITLE 2 AEROGENES (PYRUVATE BOUND HALIDE FREE ACTIVE SITE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLNEURAMINATE LYASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA AEROGENES KCTC 2190; SOURCE 3 ORGANISM_TAXID: 1028307; SOURCE 4 GENE: NANA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: KLAEA.01563.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, N-ACETYLNEURAMINATE LYASE, LIPID TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 29-NOV-23 8UR1 1 REMARK REVDAT 1 08-NOV-23 8UR1 0 JRNL AUTH S.LOVELL,L.LIU,S.SEIBOLD,M.R.MIAN JRNL TITL CRYSTAL STRUCTURE N-ACETYLNEURAMINATE LYASE (NANA) FROM JRNL TITL 2 KLEBSIELLA AEROGENES (PYRUVATE BOUND HALIDE FREE ACTIVE JRNL TITL 3 SITE) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_5127: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9300 - 4.8100 1.00 2936 151 0.2019 0.2280 REMARK 3 2 4.8100 - 3.8200 1.00 2755 138 0.1425 0.1512 REMARK 3 3 3.8200 - 3.3300 1.00 2708 138 0.1618 0.1793 REMARK 3 4 3.3300 - 3.0300 1.00 2676 133 0.1774 0.2128 REMARK 3 5 3.0300 - 2.8100 1.00 2708 114 0.1856 0.2024 REMARK 3 6 2.8100 - 2.6500 1.00 2632 143 0.1850 0.2495 REMARK 3 7 2.6500 - 2.5100 1.00 2650 135 0.1793 0.1902 REMARK 3 8 2.5100 - 2.4000 1.00 2614 146 0.1902 0.2538 REMARK 3 9 2.4000 - 2.3100 1.00 2638 121 0.2054 0.2519 REMARK 3 10 2.3100 - 2.2300 1.00 2617 132 0.2185 0.3018 REMARK 3 11 2.2300 - 2.1600 1.00 2603 154 0.2348 0.2913 REMARK 3 12 2.1600 - 2.1000 1.00 2581 144 0.2510 0.3115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2387 REMARK 3 ANGLE : 0.894 3227 REMARK 3 CHIRALITY : 0.047 361 REMARK 3 PLANARITY : 0.008 417 REMARK 3 DIHEDRAL : 15.254 869 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5126 -1.0644 28.4575 REMARK 3 T TENSOR REMARK 3 T11: 0.3037 T22: 0.2479 REMARK 3 T33: 0.2318 T12: -0.0283 REMARK 3 T13: -0.0495 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 2.0015 L22: 0.8731 REMARK 3 L33: 1.5456 L12: -0.1291 REMARK 3 L13: -0.4398 L23: 0.1944 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.1814 S13: 0.0381 REMARK 3 S21: 0.1958 S22: -0.0843 S23: -0.1149 REMARK 3 S31: -0.0942 S32: 0.2202 S33: 0.0714 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6644 7.4052 20.0397 REMARK 3 T TENSOR REMARK 3 T11: 0.3138 T22: 0.1743 REMARK 3 T33: 0.2416 T12: -0.0123 REMARK 3 T13: 0.0064 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.6378 L22: 0.4256 REMARK 3 L33: 1.1153 L12: 0.2439 REMARK 3 L13: -0.0516 L23: 0.1768 REMARK 3 S TENSOR REMARK 3 S11: 0.1427 S12: -0.1034 S13: -0.0205 REMARK 3 S21: 0.1847 S22: -0.0355 S23: -0.0442 REMARK 3 S31: -0.0995 S32: 0.0159 S33: -0.0237 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.3690 16.4670 20.1989 REMARK 3 T TENSOR REMARK 3 T11: 0.3526 T22: 0.1295 REMARK 3 T33: 0.3154 T12: 0.0022 REMARK 3 T13: 0.0501 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 6.9788 L22: 2.7463 REMARK 3 L33: 5.9803 L12: 0.7434 REMARK 3 L13: 3.2520 L23: -0.3489 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: 0.0892 S13: 0.9559 REMARK 3 S21: 0.0107 S22: -0.1978 S23: -0.2486 REMARK 3 S31: -0.8785 S32: 0.3002 S33: 0.3091 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.8638 8.1625 10.2605 REMARK 3 T TENSOR REMARK 3 T11: 0.2574 T22: 0.2030 REMARK 3 T33: 0.2658 T12: -0.0426 REMARK 3 T13: -0.0043 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 1.0660 L22: 0.7912 REMARK 3 L33: 2.0220 L12: -0.4995 REMARK 3 L13: -0.2957 L23: 0.6362 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: 0.0478 S13: 0.0493 REMARK 3 S21: 0.1460 S22: -0.1474 S23: -0.1184 REMARK 3 S31: -0.1351 S32: 0.1062 S33: 0.0705 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6330 -5.7476 11.8062 REMARK 3 T TENSOR REMARK 3 T11: 0.1920 T22: 0.2917 REMARK 3 T33: 0.3019 T12: 0.0103 REMARK 3 T13: -0.0562 T23: 0.0924 REMARK 3 L TENSOR REMARK 3 L11: 5.3395 L22: 3.2738 REMARK 3 L33: 7.8309 L12: 0.5494 REMARK 3 L13: -3.8708 L23: -1.5100 REMARK 3 S TENSOR REMARK 3 S11: 0.0632 S12: -0.3138 S13: -0.1805 REMARK 3 S21: 0.1036 S22: -0.2368 S23: -0.4827 REMARK 3 S31: -0.0462 S32: 0.8139 S33: 0.1672 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0321 -12.7472 5.9863 REMARK 3 T TENSOR REMARK 3 T11: 0.2958 T22: 0.2385 REMARK 3 T33: 0.2752 T12: 0.0888 REMARK 3 T13: -0.0325 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 3.0944 L22: 4.6846 REMARK 3 L33: 4.5040 L12: 3.1925 REMARK 3 L13: -3.2412 L23: -2.5252 REMARK 3 S TENSOR REMARK 3 S11: -0.1148 S12: -0.0190 S13: -0.7780 REMARK 3 S21: -0.2255 S22: -0.1739 S23: -0.5227 REMARK 3 S31: 0.5191 S32: 0.2539 S33: 0.2601 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6506 -16.9674 22.5315 REMARK 3 T TENSOR REMARK 3 T11: 0.2761 T22: 0.1730 REMARK 3 T33: 0.2116 T12: 0.0107 REMARK 3 T13: -0.0488 T23: 0.0563 REMARK 3 L TENSOR REMARK 3 L11: 3.2776 L22: 1.2981 REMARK 3 L33: 1.2464 L12: -1.4396 REMARK 3 L13: -0.0633 L23: -0.4391 REMARK 3 S TENSOR REMARK 3 S11: 0.1106 S12: -0.1317 S13: -0.2536 REMARK 3 S21: 0.1117 S22: -0.1794 S23: 0.0058 REMARK 3 S31: 0.1370 S32: 0.1782 S33: 0.0683 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2901 -22.4393 16.4263 REMARK 3 T TENSOR REMARK 3 T11: 0.3650 T22: 0.2854 REMARK 3 T33: 0.3037 T12: 0.1581 REMARK 3 T13: -0.0357 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 7.2559 L22: 3.6397 REMARK 3 L33: 1.8822 L12: 2.6980 REMARK 3 L13: 0.2041 L23: 0.8521 REMARK 3 S TENSOR REMARK 3 S11: -0.0816 S12: 0.0570 S13: -0.4632 REMARK 3 S21: 0.0142 S22: 0.0104 S23: -0.0621 REMARK 3 S31: 0.4594 S32: 0.4405 S33: 0.0431 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : HELIOS MULTILAYER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON III REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 42.60 REMARK 200 R MERGE (I) : 0.22900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 30.70 REMARK 200 R MERGE FOR SHELL (I) : 1.93000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS C11: 20%(V/V) GLYCEROL, 10% REMARK 280 W/V PEG 4000, 100 MM TRIS/BICINE, PH 8.5, 30 MM NANO3, 30 MM REMARK 280 NA2HPO4 AND 30 MM (NH4)2SO4 KLAEA.01563.A.B1.PW39186 AT 18.6 MG/ REMARK 280 ML. 2MM PYRUVATE ADDED TO THE PROTEIN PRIOR TO CRYSTALLIZATION. REMARK 280 CRYO: DIRECT. THIS STRUCTURE HAS NO HALIDES NEAR KPI 165 IN THE REMARK 280 ACTIVE WHICH RESULTED IN MOVEMENT OF A NEARBY LOOP IS THE REMARK 280 PREVIOUS STRUCTURES., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 137.06400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.53200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 137.06400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.53200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 137.06400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 68.53200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 137.06400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.53200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -351.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -96.40000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -96.40000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 307 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 309 LIES ON A SPECIAL POSITION. REMARK 375 N NO3 A 316 LIES ON A SPECIAL POSITION. REMARK 375 O1 NO3 A 316 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 297 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 GLN A 294 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 110 -67.27 70.40 REMARK 500 MET A 213 49.19 -155.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 318 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 40 O REMARK 620 2 THR A 75 OG1 89.1 REMARK 620 3 HOH A 444 O 99.2 84.2 REMARK 620 4 HOH A 500 O 172.3 84.2 84.0 REMARK 620 5 HOH A 541 O 84.3 97.3 176.3 92.7 REMARK 620 6 HOH A 546 O 97.0 172.5 99.1 89.4 79.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 107 OG1 REMARK 620 2 ASN A 138 OD1 125.7 REMARK 620 3 SER A 143 OG 80.7 142.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 188 O REMARK 620 2 ASP A 191 OD1 140.9 REMARK 620 3 TYR A 210 OH 88.8 102.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 267 O REMARK 620 2 LEU A 269 O 122.8 REMARK 620 N 1 DBREF1 8UR1 A 1 297 UNP A0A0H3FJT8_KLEAK DBREF2 8UR1 A A0A0H3FJT8 1 297 SEQADV 8UR1 MET A -7 UNP A0A0H3FJT INITIATING METHIONINE SEQADV 8UR1 ALA A -6 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8UR1 HIS A -5 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8UR1 HIS A -4 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8UR1 HIS A -3 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8UR1 HIS A -2 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8UR1 HIS A -1 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8UR1 HIS A 0 UNP A0A0H3FJT EXPRESSION TAG SEQADV 8UR1 ALA A 93 UNP A0A0H3FJT VAL 93 ENGINEERED MUTATION SEQRES 1 A 305 MET ALA HIS HIS HIS HIS HIS HIS MET VAL SER HIS LEU SEQRES 2 A 305 ARG GLY VAL MET PRO ALA LEU LEU THR PRO PHE ASP ALA SEQRES 3 A 305 GLN GLN ASN ILE ASP ARG ALA SER LEU ARG ARG LEU VAL SEQRES 4 A 305 ARG PHE ASN ILE GLU GLN GLY VAL ASP GLY VAL TYR VAL SEQRES 5 A 305 GLY GLY SER THR GLY GLU ALA PHE VAL GLN SER LEU SER SEQRES 6 A 305 GLU ARG GLU GLU VAL LEU GLU ILE VAL ALA GLU GLU ALA SEQRES 7 A 305 LYS GLY LYS ILE THR LEU ILE ALA HIS VAL GLY CYS VAL SEQRES 8 A 305 SER THR ALA GLU SER GLN GLN LEU ALA ALA ALA ALA LYS SEQRES 9 A 305 ARG TYR GLY PHE ASP ALA VAL SER ALA VAL THR PRO PHE SEQRES 10 A 305 TYR TYR PRO PHE SER PHE GLU GLU HIS CYS ASP HIS TYR SEQRES 11 A 305 ARG ALA ILE ILE ASP SER ALA ASP GLY ILE PRO MET VAL SEQRES 12 A 305 VAL TYR ASN ILE PRO ALA LEU SER GLY VAL LYS LEU THR SEQRES 13 A 305 LEU GLU GLN ILE ASN GLN LEU VAL THR LEU PRO GLY VAL SEQRES 14 A 305 GLY ALA LEU KPI GLN THR SER GLY ASP LEU TYR GLN MET SEQRES 15 A 305 GLU GLN ILE ARG ARG ALA HIS PRO GLU LEU VAL LEU TYR SEQRES 16 A 305 ASN GLY TYR ASP GLU ILE PHE ALA SER GLY LEU LEU ALA SEQRES 17 A 305 GLY ALA ASP GLY GLY ILE GLY SER THR TYR ASN ILE MET SEQRES 18 A 305 ALA TRP ARG TYR LEU GLY ILE VAL GLN ALA LEU LYS GLU SEQRES 19 A 305 GLY ASP THR ALA LYS ALA GLN GLN LEU GLN HIS GLU CYS SEQRES 20 A 305 ASN LYS VAL ILE ASP LEU LEU VAL LYS VAL GLY VAL PHE SEQRES 21 A 305 ARG GLY LEU LYS THR VAL LEU HIS TYR MET ASP VAL LEU SEQRES 22 A 305 SER VAL PRO LEU CYS ARG LYS PRO PHE ALA PRO VAL GLU SEQRES 23 A 305 ASP LYS PHE GLN ALA GLU LEU LYS ALA LEU ALA GLN GLN SEQRES 24 A 305 LEU MET GLN GLU ARG GLY MODRES 8UR1 KPI A 165 LYS MODIFIED RESIDUE HET KPI A 165 14 HET NA A 301 1 HET NA A 302 1 HET NA A 303 1 HET NA A 304 1 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HET CL A 308 1 HET SO4 A 309 5 HET SO4 A 310 5 HET SO4 A 311 5 HET GOL A 312 6 HET GOL A 313 6 HET GOL A 314 6 HET GOL A 315 6 HET NO3 A 316 4 HET NO3 A 317 4 HET 1PE A 318 12 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NO3 NITRATE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 FORMUL 1 KPI C9 H16 N2 O4 FORMUL 2 NA 4(NA 1+) FORMUL 6 CL 4(CL 1-) FORMUL 10 SO4 3(O4 S 2-) FORMUL 13 GOL 4(C3 H8 O3) FORMUL 17 NO3 2(N O3 1-) FORMUL 19 1PE C10 H22 O6 FORMUL 20 HOH *173(H2 O) HELIX 1 AA1 VAL A 2 ARG A 6 5 5 HELIX 2 AA2 ASP A 23 GLU A 36 1 14 HELIX 3 AA3 GLU A 50 GLN A 54 5 5 HELIX 4 AA4 SER A 55 LYS A 71 1 17 HELIX 5 AA5 SER A 84 GLY A 99 1 16 HELIX 6 AA6 SER A 114 ASP A 130 1 17 HELIX 7 AA7 ILE A 139 GLY A 144 1 6 HELIX 8 AA8 THR A 148 THR A 157 1 10 HELIX 9 AA9 ASP A 170 HIS A 181 1 12 HELIX 10 AB1 TYR A 190 GLU A 192 5 3 HELIX 11 AB2 ILE A 193 GLY A 201 1 9 HELIX 12 AB3 THR A 209 GLY A 227 1 19 HELIX 13 AB4 ASP A 228 GLY A 250 1 23 HELIX 14 AB5 GLY A 250 MET A 262 1 13 HELIX 15 AB6 GLU A 278 LYS A 280 5 3 HELIX 16 AB7 PHE A 281 ARG A 296 1 16 SHEET 1 AA1 8 VAL A 8 PRO A 10 0 SHEET 2 AA1 8 GLY A 204 GLY A 207 1 O GLY A 205 N MET A 9 SHEET 3 AA1 8 VAL A 185 ASN A 188 1 N ASN A 188 O GLY A 204 SHEET 4 AA1 8 VAL A 161 GLN A 166 1 N LEU A 164 O TYR A 187 SHEET 5 AA1 8 MET A 134 ASN A 138 1 N VAL A 136 O KPI A 165 SHEET 6 AA1 8 ALA A 102 VAL A 106 1 N VAL A 103 O VAL A 135 SHEET 7 AA1 8 THR A 75 HIS A 79 1 N ALA A 78 O ALA A 102 SHEET 8 AA1 8 GLY A 41 VAL A 44 1 N VAL A 44 O HIS A 79 LINK C LEU A 164 N KPI A 165 1555 1555 1.33 LINK C KPI A 165 N GLN A 166 1555 1555 1.33 LINK O ASP A 40 NA NA A 301 1555 1555 2.34 LINK OG1 THR A 75 NA NA A 301 1555 1555 2.27 LINK OG1 THR A 107 NA NA A 302 1555 1555 2.75 LINK OD1 ASN A 138 NA NA A 302 1555 1555 3.05 LINK OG SER A 143 NA NA A 302 1555 1555 2.61 LINK O ASN A 188 NA NA A 303 1555 1555 2.81 LINK OD1 ASP A 191 NA NA A 303 1555 1555 2.69 LINK OH TYR A 210 NA NA A 303 1555 1555 2.83 LINK O VAL A 267 NA NA A 304 1555 1555 2.69 LINK O LEU A 269 NA NA A 304 1555 1555 2.74 LINK NA NA A 301 O HOH A 444 1555 1555 2.42 LINK NA NA A 301 O HOH A 500 1555 1555 2.32 LINK NA NA A 301 O HOH A 541 1555 1555 2.40 LINK NA NA A 301 O HOH A 546 1555 1555 2.21 CISPEP 1 LYS A 272 PRO A 273 0 13.27 CRYST1 96.400 96.400 205.596 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010373 0.005989 0.000000 0.00000 SCALE2 0.000000 0.011978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004864 0.00000