HEADER HYDROLASE 27-OCT-23 8USF TITLE CRYSTAL STRUCTURE OF KEMP ELIMINASE HG649 WITH BOUND TRANSITION STATE TITLE 2 ANALOGUE, 280 K COMPND MOL_ID: 1; COMPND 2 MOLECULE: KEMP ELIMINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOASCUS AURANTIACUS; SOURCE 3 ORGANISM_TAXID: 5087; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DE NOVO ENZYME DESIGN; COMPUTATIONAL PROTEIN DESIGN; KEMP ELIMINASES; KEYWDS 2 BIOCATALYSIS; DIRECTED EVOLUTION; X-RAY CRYSTALLOGRAPHY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.SEIFINOFEREST REVDAT 1 06-DEC-23 8USF 0 JRNL AUTH R.V.RAKOTOHARISOA,B.SEIFINOFEREST,N.ZARIFI,J.D.M.MILLER, JRNL AUTH 2 J.M.RODRIGUEZ,M.C.THOMPSON,R.A.CHICA JRNL TITL HARNESSING THE CONFORMATIONAL ENSEMBLE TO DESIGN EFFICIENT JRNL TITL 2 ARTIFICIAL ENZYMES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.13.2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 124320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 6289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 90.5000 - 4.5100 1.00 4025 244 0.1297 0.1465 REMARK 3 2 4.5100 - 3.5800 1.00 3960 227 0.1015 0.1167 REMARK 3 3 3.5800 - 3.1200 1.00 3972 186 0.1162 0.1229 REMARK 3 4 3.1200 - 2.8400 1.00 3952 203 0.1218 0.1541 REMARK 3 5 2.8400 - 2.6300 1.00 3993 208 0.1208 0.1416 REMARK 3 6 2.6300 - 2.4800 1.00 3935 218 0.1149 0.1392 REMARK 3 7 2.4800 - 2.3600 1.00 3939 216 0.1089 0.1194 REMARK 3 8 2.3600 - 2.2500 1.00 3951 215 0.1108 0.1320 REMARK 3 9 2.2500 - 2.1700 1.00 3969 188 0.1100 0.1243 REMARK 3 10 2.1700 - 2.0900 1.00 3923 215 0.1165 0.1298 REMARK 3 11 2.0900 - 2.0300 1.00 3957 225 0.1217 0.1503 REMARK 3 12 2.0300 - 1.9700 1.00 3888 199 0.1244 0.1531 REMARK 3 13 1.9700 - 1.9200 1.00 3995 195 0.1278 0.1470 REMARK 3 14 1.9200 - 1.8700 1.00 3917 222 0.1395 0.1723 REMARK 3 15 1.8700 - 1.8300 1.00 3894 218 0.1469 0.1719 REMARK 3 16 1.8300 - 1.7900 1.00 3923 236 0.1577 0.1801 REMARK 3 17 1.7900 - 1.7500 0.99 3894 209 0.1720 0.1954 REMARK 3 18 1.7500 - 1.7200 0.99 3947 182 0.1738 0.1905 REMARK 3 19 1.7200 - 1.6900 1.00 3936 172 0.1807 0.1949 REMARK 3 20 1.6900 - 1.6600 1.00 3942 212 0.1879 0.2064 REMARK 3 21 1.6600 - 1.6300 0.99 3936 218 0.1962 0.2504 REMARK 3 22 1.6300 - 1.6100 1.00 3875 229 0.1968 0.1918 REMARK 3 23 1.6100 - 1.5800 1.00 3881 229 0.2115 0.2246 REMARK 3 24 1.5800 - 1.5600 1.00 3939 198 0.2057 0.2257 REMARK 3 25 1.5600 - 1.5400 1.00 3897 226 0.2280 0.2731 REMARK 3 26 1.5400 - 1.5200 1.00 3896 193 0.2409 0.2773 REMARK 3 27 1.5200 - 1.5000 1.00 3903 232 0.2400 0.2563 REMARK 3 28 1.5000 - 1.4800 0.99 3950 189 0.2612 0.2409 REMARK 3 29 1.4800 - 1.4700 0.99 3900 184 0.2715 0.3150 REMARK 3 30 1.4700 - 1.4500 1.00 3942 201 0.2880 0.3171 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.148 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.666 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5462 REMARK 3 ANGLE : 0.885 7561 REMARK 3 CHIRALITY : 0.071 832 REMARK 3 PLANARITY : 0.007 1039 REMARK 3 DIHEDRAL : 12.698 2015 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6943 4.7757 36.5640 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.0919 REMARK 3 T33: 0.1216 T12: -0.0082 REMARK 3 T13: -0.0062 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.1342 L22: 1.4772 REMARK 3 L33: 2.3156 L12: 0.1510 REMARK 3 L13: 0.4807 L23: 0.6117 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: 0.0188 S13: -0.0711 REMARK 3 S21: 0.0157 S22: -0.0259 S23: -0.0808 REMARK 3 S31: 0.0554 S32: 0.0006 S33: 0.0076 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2969 11.9282 34.9689 REMARK 3 T TENSOR REMARK 3 T11: 0.1059 T22: 0.1390 REMARK 3 T33: 0.1254 T12: 0.0019 REMARK 3 T13: -0.0163 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.8958 L22: 0.8041 REMARK 3 L33: 0.3605 L12: 0.0579 REMARK 3 L13: 0.0393 L23: 0.0421 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: 0.0541 S13: 0.0438 REMARK 3 S21: -0.0208 S22: -0.0440 S23: 0.1436 REMARK 3 S31: -0.0198 S32: -0.0625 S33: 0.0267 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7756 14.5609 43.9146 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.1445 REMARK 3 T33: 0.1264 T12: -0.0123 REMARK 3 T13: 0.0080 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.6003 L22: 1.0341 REMARK 3 L33: 0.6895 L12: -0.1969 REMARK 3 L13: 0.6172 L23: -0.2837 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.1667 S13: 0.0163 REMARK 3 S21: 0.0674 S22: -0.0183 S23: 0.2087 REMARK 3 S31: 0.0120 S32: -0.1160 S33: 0.0151 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7109 25.2125 44.7822 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.1494 REMARK 3 T33: 0.1449 T12: 0.0053 REMARK 3 T13: -0.0027 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.9566 L22: 0.7916 REMARK 3 L33: 0.5231 L12: 0.4909 REMARK 3 L13: 0.0014 L23: 0.0750 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.1207 S13: 0.1531 REMARK 3 S21: 0.0339 S22: -0.0701 S23: 0.1325 REMARK 3 S31: -0.0385 S32: -0.0817 S33: 0.0330 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0104 30.8222 50.8569 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.1576 REMARK 3 T33: 0.1674 T12: 0.0019 REMARK 3 T13: 0.0021 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 1.9482 L22: 1.0790 REMARK 3 L33: 2.9912 L12: 0.8816 REMARK 3 L13: -1.6953 L23: -1.0640 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.2166 S13: 0.1709 REMARK 3 S21: 0.2018 S22: -0.1120 S23: 0.1362 REMARK 3 S31: -0.0061 S32: -0.0046 S33: 0.0771 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 197 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5720 17.4527 38.1399 REMARK 3 T TENSOR REMARK 3 T11: 0.0901 T22: 0.0961 REMARK 3 T33: 0.1072 T12: -0.0020 REMARK 3 T13: -0.0105 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.5841 L22: 0.8306 REMARK 3 L33: 1.0862 L12: -0.0136 REMARK 3 L13: -0.1194 L23: 0.4470 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: -0.0174 S13: 0.0018 REMARK 3 S21: -0.0039 S22: -0.0054 S23: -0.0609 REMARK 3 S31: -0.0439 S32: 0.0371 S33: -0.0246 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6972 11.3486 6.6240 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.1059 REMARK 3 T33: 0.1244 T12: 0.0068 REMARK 3 T13: 0.0001 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.0229 L22: 1.4785 REMARK 3 L33: 2.7508 L12: 0.2257 REMARK 3 L13: 0.4406 L23: 0.5832 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.0313 S13: 0.0947 REMARK 3 S21: -0.0055 S22: 0.0043 S23: -0.0689 REMARK 3 S31: -0.1106 S32: 0.0765 S33: 0.0238 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7144 5.1789 18.4513 REMARK 3 T TENSOR REMARK 3 T11: 0.2326 T22: 0.1850 REMARK 3 T33: 0.1755 T12: -0.0077 REMARK 3 T13: 0.0622 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.9743 L22: 1.0676 REMARK 3 L33: 0.6260 L12: 0.2471 REMARK 3 L13: -0.2141 L23: -0.1161 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: -0.1786 S13: 0.0704 REMARK 3 S21: 0.2853 S22: -0.0583 S23: 0.3490 REMARK 3 S31: 0.0124 S32: -0.0954 S33: -0.0114 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0615 2.8943 12.5068 REMARK 3 T TENSOR REMARK 3 T11: 0.1550 T22: 0.1719 REMARK 3 T33: 0.2425 T12: 0.0030 REMARK 3 T13: 0.0404 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.1564 L22: 1.2070 REMARK 3 L33: 1.4389 L12: 0.3236 REMARK 3 L13: -0.6901 L23: -0.3966 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0267 S13: 0.0925 REMARK 3 S21: 0.0949 S22: 0.0064 S23: 0.4609 REMARK 3 S31: 0.0022 S32: -0.1844 S33: -0.0285 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4551 -8.7225 8.4817 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.1548 REMARK 3 T33: 0.1892 T12: -0.0209 REMARK 3 T13: 0.0168 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.1130 L22: 1.3192 REMARK 3 L33: 0.7720 L12: -0.2930 REMARK 3 L13: -0.2959 L23: 0.2553 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: 0.0362 S13: -0.0749 REMARK 3 S21: 0.1109 S22: -0.0155 S23: 0.2964 REMARK 3 S31: 0.1218 S32: -0.1171 S33: 0.0402 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 182 THROUGH 196 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2940 -14.3152 0.5356 REMARK 3 T TENSOR REMARK 3 T11: 0.2062 T22: 0.1520 REMARK 3 T33: 0.1910 T12: -0.0152 REMARK 3 T13: -0.0199 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 4.0503 L22: 1.7372 REMARK 3 L33: 1.1007 L12: -1.4915 REMARK 3 L13: 1.3382 L23: -0.5102 REMARK 3 S TENSOR REMARK 3 S11: -0.0695 S12: 0.1554 S13: -0.1060 REMARK 3 S21: -0.2272 S22: -0.0232 S23: 0.3134 REMARK 3 S31: 0.1201 S32: -0.0491 S33: 0.0894 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 197 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9717 -6.3931 2.0773 REMARK 3 T TENSOR REMARK 3 T11: 0.1550 T22: 0.1166 REMARK 3 T33: 0.1116 T12: -0.0015 REMARK 3 T13: 0.0013 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.4650 L22: 0.8890 REMARK 3 L33: 0.7664 L12: 0.2091 REMARK 3 L13: 0.4429 L23: 0.2802 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: 0.0304 S13: -0.0759 REMARK 3 S21: -0.0871 S22: 0.0142 S23: 0.0048 REMARK 3 S31: 0.0627 S32: -0.0265 S33: -0.0326 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 245 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4599 -0.6674 -0.5773 REMARK 3 T TENSOR REMARK 3 T11: 0.1752 T22: 0.1388 REMARK 3 T33: 0.1146 T12: 0.0005 REMARK 3 T13: 0.0190 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.4604 L22: 1.6216 REMARK 3 L33: 1.0986 L12: 0.1383 REMARK 3 L13: 0.0206 L23: 0.6618 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.1713 S13: -0.0097 REMARK 3 S21: -0.1983 S22: 0.0128 S23: 0.0092 REMARK 3 S31: -0.0432 S32: 0.0818 S33: -0.0292 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 271 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9701 4.0659 8.7097 REMARK 3 T TENSOR REMARK 3 T11: 0.1111 T22: 0.1042 REMARK 3 T33: 0.1133 T12: 0.0041 REMARK 3 T13: 0.0124 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.7517 L22: 2.1318 REMARK 3 L33: 1.9416 L12: 0.2616 REMARK 3 L13: 0.8191 L23: -0.0405 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: 0.0733 S13: 0.0443 REMARK 3 S21: 0.0008 S22: 0.0173 S23: -0.1184 REMARK 3 S31: 0.0413 S32: 0.2390 S33: -0.0400 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8USF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1000278239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 280 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.5.492, DIALS XIA2 0.5.492 REMARK 200 DATA SCALING SOFTWARE : AIMLESS XIA2 0.5.492 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124369 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 90.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.83700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V1.13.2998 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5 MG/ML PROTEIN, 30% PEG4000, 0.3 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.73250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 304 REMARK 465 SER A 305 REMARK 465 ILE A 306 REMARK 465 GLU A 307 REMARK 465 GLY A 308 REMARK 465 ARG A 309 REMARK 465 GLY A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 GLU B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 304 REMARK 465 SER B 305 REMARK 465 ILE B 306 REMARK 465 GLU B 307 REMARK 465 GLY B 308 REMARK 465 ARG B 309 REMARK 465 GLY B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 465 HIS B 313 REMARK 465 HIS B 314 REMARK 465 HIS B 315 REMARK 465 HIS B 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 8 O HOH A 503 1.41 REMARK 500 HE22 GLN B 4 OE1 GLN B 302 1.41 REMARK 500 HE ARG A 190 O HOH A 508 1.53 REMARK 500 OD2 ASP B 127 H3 6NT B 401 1.56 REMARK 500 HD21 ASN A 106 O HOH A 505 1.57 REMARK 500 OE1 GLN A 141 O HOH A 501 1.71 REMARK 500 OE1 GLN B 8 O HOH B 501 1.93 REMARK 500 O HOH A 696 O HOH A 776 2.03 REMARK 500 OE1 GLN B 158 O HOH B 502 2.04 REMARK 500 OG SER B 278 O HOH B 503 2.06 REMARK 500 O HOH B 526 O HOH B 774 2.10 REMARK 500 NE2 GLN A 8 O HOH A 503 2.12 REMARK 500 O HOH A 776 O HOH B 559 2.14 REMARK 500 O HOH B 734 O HOH B 788 2.15 REMARK 500 O HOH A 754 O HOH A 816 2.15 REMARK 500 O HOH A 555 O HOH A 572 2.15 REMARK 500 O HOH A 754 O HOH A 764 2.16 REMARK 500 O HOH A 667 O HOH A 785 2.18 REMARK 500 O HOH A 567 O HOH A 774 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 785 O HOH B 799 2545 1.95 REMARK 500 O HOH A 789 O HOH A 825 2656 2.04 REMARK 500 O HOH A 615 O HOH B 745 1655 2.06 REMARK 500 O HOH B 719 O HOH B 785 2555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 269 -63.48 -90.55 REMARK 500 ARG A 276 56.72 -107.40 REMARK 500 THR A 280 65.70 36.33 REMARK 500 VAL B 269 -64.82 -90.16 REMARK 500 ARG B 276 54.70 -119.79 REMARK 500 THR B 280 64.67 38.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 8USF A -1 316 PDB 8USF 8USF -1 316 DBREF 8USF B -1 316 PDB 8USF 8USF -1 316 SEQRES 1 A 318 MET ALA GLU ALA ALA GLN SER VAL ASP GLN LEU ILE LYS SEQRES 2 A 318 ALA ARG GLY LYS VAL TYR PHE GLY VAL ALA THR ASP GLN SEQRES 3 A 318 ASN ARG LEU THR THR GLY LYS ASN ALA ALA ILE ILE GLN SEQRES 4 A 318 ALA ASP PHE GLY MET VAL TRP PRO GLU ASN SER MET GLN SEQRES 5 A 318 TRP ASP ALA THR GLU PRO SER GLN GLY ASN PHE ASN PHE SEQRES 6 A 318 ALA GLY ALA ASP TYR LEU VAL ASN TRP ALA GLN GLN ASN SEQRES 7 A 318 GLY LYS LEU ILE GLY GLY GLY CYS LEU VAL TRP HIS SER SEQRES 8 A 318 PHE LEU PRO SER TRP VAL SER SER ILE THR ASP LYS ASN SEQRES 9 A 318 THR LEU THR ASN VAL MET LYS ASN HIS ILE THR THR LEU SEQRES 10 A 318 MET THR ARG TYR LYS GLY LYS ILE ARG THR TRP ASP VAL SEQRES 11 A 318 VAL GLY GLU ALA PHE ASN GLU ASP GLY SER LEU ARG GLN SEQRES 12 A 318 THR VAL PHE LEU ASN VAL ILE GLY GLU ASP TYR ILE PRO SEQRES 13 A 318 ILE ALA PHE GLN THR ALA ARG ALA ALA ASP PRO ASN ALA SEQRES 14 A 318 LYS LEU TYR ILE MET ASP TYR ASN LEU ASP SER ALA SER SEQRES 15 A 318 TYR PRO LYS THR GLN ALA ILE VAL ASN ARG VAL LYS GLN SEQRES 16 A 318 TRP ARG ALA ALA GLY VAL PRO ILE ASP GLY ILE GLY SER SEQRES 17 A 318 GLN THR HIS LEU SER ALA GLY GLN GLY ALA GLY VAL LEU SEQRES 18 A 318 GLN ALA LEU PRO LEU LEU ALA SER ALA GLY THR PRO GLU SEQRES 19 A 318 VAL SER ILE LEU MET LEU ASP VAL ALA GLY ALA SER PRO SEQRES 20 A 318 THR ASP TYR VAL ASN VAL VAL ASN ALA CYS LEU ASN VAL SEQRES 21 A 318 GLN SER CYS VAL GLY ILE THR VAL MET GLY VAL ALA ASP SEQRES 22 A 318 PRO ASP SER VAL ARG ALA SER THR THR PRO LEU LEU PHE SEQRES 23 A 318 ASP GLY ASN PHE ASN PRO LYS PRO ALA TYR ASN ALA ILE SEQRES 24 A 318 VAL GLN ASP LEU GLN GLN GLY SER ILE GLU GLY ARG GLY SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS SEQRES 1 B 318 MET ALA GLU ALA ALA GLN SER VAL ASP GLN LEU ILE LYS SEQRES 2 B 318 ALA ARG GLY LYS VAL TYR PHE GLY VAL ALA THR ASP GLN SEQRES 3 B 318 ASN ARG LEU THR THR GLY LYS ASN ALA ALA ILE ILE GLN SEQRES 4 B 318 ALA ASP PHE GLY MET VAL TRP PRO GLU ASN SER MET GLN SEQRES 5 B 318 TRP ASP ALA THR GLU PRO SER GLN GLY ASN PHE ASN PHE SEQRES 6 B 318 ALA GLY ALA ASP TYR LEU VAL ASN TRP ALA GLN GLN ASN SEQRES 7 B 318 GLY LYS LEU ILE GLY GLY GLY CYS LEU VAL TRP HIS SER SEQRES 8 B 318 PHE LEU PRO SER TRP VAL SER SER ILE THR ASP LYS ASN SEQRES 9 B 318 THR LEU THR ASN VAL MET LYS ASN HIS ILE THR THR LEU SEQRES 10 B 318 MET THR ARG TYR LYS GLY LYS ILE ARG THR TRP ASP VAL SEQRES 11 B 318 VAL GLY GLU ALA PHE ASN GLU ASP GLY SER LEU ARG GLN SEQRES 12 B 318 THR VAL PHE LEU ASN VAL ILE GLY GLU ASP TYR ILE PRO SEQRES 13 B 318 ILE ALA PHE GLN THR ALA ARG ALA ALA ASP PRO ASN ALA SEQRES 14 B 318 LYS LEU TYR ILE MET ASP TYR ASN LEU ASP SER ALA SER SEQRES 15 B 318 TYR PRO LYS THR GLN ALA ILE VAL ASN ARG VAL LYS GLN SEQRES 16 B 318 TRP ARG ALA ALA GLY VAL PRO ILE ASP GLY ILE GLY SER SEQRES 17 B 318 GLN THR HIS LEU SER ALA GLY GLN GLY ALA GLY VAL LEU SEQRES 18 B 318 GLN ALA LEU PRO LEU LEU ALA SER ALA GLY THR PRO GLU SEQRES 19 B 318 VAL SER ILE LEU MET LEU ASP VAL ALA GLY ALA SER PRO SEQRES 20 B 318 THR ASP TYR VAL ASN VAL VAL ASN ALA CYS LEU ASN VAL SEQRES 21 B 318 GLN SER CYS VAL GLY ILE THR VAL MET GLY VAL ALA ASP SEQRES 22 B 318 PRO ASP SER VAL ARG ALA SER THR THR PRO LEU LEU PHE SEQRES 23 B 318 ASP GLY ASN PHE ASN PRO LYS PRO ALA TYR ASN ALA ILE SEQRES 24 B 318 VAL GLN ASP LEU GLN GLN GLY SER ILE GLU GLY ARG GLY SEQRES 25 B 318 HIS HIS HIS HIS HIS HIS HET 6NT A 401 16 HET 6NT B 401 16 HETNAM 6NT 6-NITROBENZOTRIAZOLE FORMUL 3 6NT 2(C6 H4 N4 O2) FORMUL 5 HOH *670(H2 O) HELIX 1 AA1 SER A 5 ARG A 13 1 9 HELIX 2 AA2 ASP A 23 THR A 28 1 6 HELIX 3 AA3 LYS A 31 PHE A 40 1 10 HELIX 4 AA4 GLN A 50 GLU A 55 1 6 HELIX 5 AA5 PHE A 63 GLY A 77 1 15 HELIX 6 AA6 TRP A 87 LEU A 91 5 5 HELIX 7 AA7 PRO A 92 SER A 97 1 6 HELIX 8 AA8 ASP A 100 TYR A 119 1 20 HELIX 9 AA9 THR A 142 ILE A 148 1 7 HELIX 10 AB1 ASP A 151 ASP A 164 1 14 HELIX 11 AB2 TYR A 181 ALA A 197 1 17 HELIX 12 AB3 GLN A 214 SER A 227 1 14 HELIX 13 AB4 SER A 244 VAL A 258 1 15 HELIX 14 AB5 ALA A 270 SER A 274 5 5 HELIX 15 AB6 ARG A 276 THR A 280 5 5 HELIX 16 AB7 LYS A 291 GLN A 303 1 13 HELIX 17 AB8 SER B 5 ARG B 13 1 9 HELIX 18 AB9 ASP B 23 THR B 28 1 6 HELIX 19 AC1 LYS B 31 PHE B 40 1 10 HELIX 20 AC2 GLN B 50 GLU B 55 1 6 HELIX 21 AC3 PHE B 63 ASN B 76 1 14 HELIX 22 AC4 TRP B 87 LEU B 91 5 5 HELIX 23 AC5 PRO B 92 SER B 97 1 6 HELIX 24 AC6 ASP B 100 TYR B 119 1 20 HELIX 25 AC7 THR B 142 ILE B 148 1 7 HELIX 26 AC8 ASP B 151 ASP B 164 1 14 HELIX 27 AC9 TYR B 181 ALA B 197 1 17 HELIX 28 AD1 GLN B 214 SER B 227 1 14 HELIX 29 AD2 SER B 244 VAL B 258 1 15 HELIX 30 AD3 ALA B 270 SER B 274 5 5 HELIX 31 AD4 ARG B 276 THR B 280 5 5 HELIX 32 AD5 LYS B 291 GLN B 303 1 13 SHEET 1 AA1 9 TYR A 17 THR A 22 0 SHEET 2 AA1 9 MET A 42 PRO A 45 1 O TRP A 44 N THR A 22 SHEET 3 AA1 9 LEU A 79 GLY A 82 1 O GLY A 81 N VAL A 43 SHEET 4 AA1 9 THR A 125 GLY A 130 1 O ASP A 127 N GLY A 82 SHEET 5 AA1 9 LYS A 168 TYR A 174 1 O LYS A 168 N TRP A 126 SHEET 6 AA1 9 GLY A 203 LEU A 210 1 O GLN A 207 N ASP A 173 SHEET 7 AA1 9 GLU A 232 VAL A 240 1 O LEU A 236 N SER A 206 SHEET 8 AA1 9 CYS A 261 VAL A 266 1 O THR A 265 N LEU A 238 SHEET 9 AA1 9 TYR A 17 THR A 22 1 N GLY A 19 O ILE A 264 SHEET 1 AA2 9 TYR B 17 THR B 22 0 SHEET 2 AA2 9 MET B 42 PRO B 45 1 O TRP B 44 N THR B 22 SHEET 3 AA2 9 LEU B 79 VAL B 86 1 O GLY B 81 N VAL B 43 SHEET 4 AA2 9 THR B 125 GLY B 130 1 O ASP B 127 N GLY B 82 SHEET 5 AA2 9 LYS B 168 TYR B 174 1 O LYS B 168 N TRP B 126 SHEET 6 AA2 9 GLY B 203 LEU B 210 1 O GLN B 207 N ASP B 173 SHEET 7 AA2 9 GLU B 232 VAL B 240 1 O LEU B 236 N SER B 206 SHEET 8 AA2 9 CYS B 261 VAL B 266 1 O THR B 265 N LEU B 238 SHEET 9 AA2 9 TYR B 17 THR B 22 1 N GLY B 19 O ILE B 264 SSBOND 1 CYS A 255 CYS A 261 1555 1555 2.04 SSBOND 2 CYS B 255 CYS B 261 1555 1555 2.04 CISPEP 1 GLY A 83 CYS A 84 0 -3.94 CISPEP 2 GLY B 83 CYS B 84 0 -4.58 CRYST1 51.072 77.465 93.811 90.00 105.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019580 0.000000 0.005348 0.00000 SCALE2 0.000000 0.012909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011050 0.00000