HEADER TRANSFERASE 07-NOV-23 8UWP TITLE CRYSTAL STRUCTURE OF SETDB1 TUDOR DOMAIN IN COMPLEX WITH MR46747 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETDB1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ERG-ASSOCIATED PROTEIN WITH SET DOMAIN,ESET,HISTONE H3-K9 COMPND 5 METHYLTRANSFERASE 4,H3-K9-HMTASE 4,LYSINE N-METHYLTRANSFERASE 1E,SET COMPND 6 DOMAIN BIFURCATED 1; COMPND 7 EC: 2.1.1.43; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETDB1, KIAA0067, KMT1E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-MHL KEYWDS SETDB1, EPIGENETICS, METHYLLYSINE READER, SGC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHRESTHA,S.BELDAR,A.DONG,S.ACKLOO,P.J.BROWN,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,L.HALABELIAN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 17-JAN-24 8UWP 1 TITLE JRNL REVDAT 1 22-NOV-23 8UWP 0 JRNL AUTH S.SHRESTHA,S.BELDAR,A.DONG,S.ACKLOO,P.J.BROWN, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,L.HALABELIAN, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF SETDB1 TUDOR DOMAIN IN COMPLEX WITH JRNL TITL 2 MR46747 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 47896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1202 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3299 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 121 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.11000 REMARK 3 B22 (A**2) : -3.04000 REMARK 3 B33 (A**2) : -1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.744 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3740 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3406 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5083 ; 1.363 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7864 ; 1.261 ; 1.606 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 450 ; 8.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;26.178 ;21.383 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 604 ;13.816 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.457 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4240 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 847 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1770 ; 2.673 ; 3.167 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1769 ; 2.672 ; 3.165 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2230 ; 3.904 ; 4.737 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2231 ; 3.904 ; 4.739 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1970 ; 3.324 ; 3.505 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1971 ; 3.323 ; 3.505 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2853 ; 4.824 ; 5.136 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4020 ; 6.517 ;36.026 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3989 ; 6.476 ;35.884 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8UWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000278967. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49143 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.2, 0.2M NH4SO4, 20% REMARK 280 PEG8000, 2MM DTT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.64250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.64250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 0 REMARK 465 LYS A 213 REMARK 465 THR A 214 REMARK 465 MET B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 SER B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 ARG B 0 REMARK 465 LYS B 213 REMARK 465 THR B 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 20 CD NE CZ NH1 NH2 REMARK 470 LYS A 22 CE NZ REMARK 470 LYS A 26 CE NZ REMARK 470 LYS A 39 CD CE NZ REMARK 470 LYS A 44 CE NZ REMARK 470 ASN A 47 OD1 ND2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 99 CE NZ REMARK 470 LYS A 129 CE NZ REMARK 470 GLU A 146 OE1 OE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 SER A 161 OG REMARK 470 LYS A 166 CE NZ REMARK 470 LYS A 175 CE NZ REMARK 470 LYS B 26 CE NZ REMARK 470 VAL B 35 CG1 CG2 REMARK 470 LYS B 42 NZ REMARK 470 LYS B 44 CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 LYS B 68 CD CE NZ REMARK 470 LYS B 78 CE NZ REMARK 470 LYS B 80 CE NZ REMARK 470 LYS B 99 CD CE NZ REMARK 470 LYS B 129 CD CE NZ REMARK 470 GLU B 146 CD OE1 OE2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 SER B 161 OG REMARK 470 LYS B 166 CD CE NZ REMARK 470 GLU B 170 CD OE1 OE2 REMARK 470 LYS B 175 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 14 OD2 ASP B 46 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 -6.64 94.18 REMARK 500 SER A 12 -6.87 94.18 REMARK 500 ASN A 47 -86.76 -77.62 REMARK 500 ASN A 83 10.11 -142.91 REMARK 500 SER B 12 -5.97 89.92 REMARK 500 SER B 12 -5.34 89.92 REMARK 500 LYS B 22 -2.66 84.07 REMARK 500 LYS B 22 -3.62 84.07 REMARK 500 ASN B 47 -80.55 -94.00 REMARK 500 LYS B 48 -0.62 74.62 REMARK 500 ASP B 61 48.41 -94.07 REMARK 500 GLU B 180 151.14 178.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 48 GLY B 49 144.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 8UWP A 7 214 UNP Q15047 SETB1_HUMAN 196 403 DBREF 8UWP B 7 214 UNP Q15047 SETB1_HUMAN 196 403 SEQADV 8UWP MET A -10 UNP Q15047 INITIATING METHIONINE SEQADV 8UWP HIS A -9 UNP Q15047 EXPRESSION TAG SEQADV 8UWP HIS A -8 UNP Q15047 EXPRESSION TAG SEQADV 8UWP HIS A -7 UNP Q15047 EXPRESSION TAG SEQADV 8UWP HIS A -6 UNP Q15047 EXPRESSION TAG SEQADV 8UWP HIS A -5 UNP Q15047 EXPRESSION TAG SEQADV 8UWP HIS A -4 UNP Q15047 EXPRESSION TAG SEQADV 8UWP SER A -3 UNP Q15047 EXPRESSION TAG SEQADV 8UWP SER A -2 UNP Q15047 EXPRESSION TAG SEQADV 8UWP GLY A -1 UNP Q15047 EXPRESSION TAG SEQADV 8UWP ARG A 0 UNP Q15047 EXPRESSION TAG SEQADV 8UWP GLU A 1 UNP Q15047 EXPRESSION TAG SEQADV 8UWP ASN A 2 UNP Q15047 EXPRESSION TAG SEQADV 8UWP LEU A 3 UNP Q15047 EXPRESSION TAG SEQADV 8UWP TYR A 4 UNP Q15047 EXPRESSION TAG SEQADV 8UWP PHE A 5 UNP Q15047 EXPRESSION TAG SEQADV 8UWP GLN A 6 UNP Q15047 EXPRESSION TAG SEQADV 8UWP MET B -10 UNP Q15047 INITIATING METHIONINE SEQADV 8UWP HIS B -9 UNP Q15047 EXPRESSION TAG SEQADV 8UWP HIS B -8 UNP Q15047 EXPRESSION TAG SEQADV 8UWP HIS B -7 UNP Q15047 EXPRESSION TAG SEQADV 8UWP HIS B -6 UNP Q15047 EXPRESSION TAG SEQADV 8UWP HIS B -5 UNP Q15047 EXPRESSION TAG SEQADV 8UWP HIS B -4 UNP Q15047 EXPRESSION TAG SEQADV 8UWP SER B -3 UNP Q15047 EXPRESSION TAG SEQADV 8UWP SER B -2 UNP Q15047 EXPRESSION TAG SEQADV 8UWP GLY B -1 UNP Q15047 EXPRESSION TAG SEQADV 8UWP ARG B 0 UNP Q15047 EXPRESSION TAG SEQADV 8UWP GLU B 1 UNP Q15047 EXPRESSION TAG SEQADV 8UWP ASN B 2 UNP Q15047 EXPRESSION TAG SEQADV 8UWP LEU B 3 UNP Q15047 EXPRESSION TAG SEQADV 8UWP TYR B 4 UNP Q15047 EXPRESSION TAG SEQADV 8UWP PHE B 5 UNP Q15047 EXPRESSION TAG SEQADV 8UWP GLN B 6 UNP Q15047 EXPRESSION TAG SEQRES 1 A 225 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 225 LEU TYR PHE GLN GLY ASP LEU ILE VAL SER MET ARG ILE SEQRES 3 A 225 LEU GLY LYS LYS ARG THR LYS THR TRP HIS LYS GLY THR SEQRES 4 A 225 LEU ILE ALA ILE GLN THR VAL GLY PRO GLY LYS LYS TYR SEQRES 5 A 225 LYS VAL LYS PHE ASP ASN LYS GLY LYS SER LEU LEU SER SEQRES 6 A 225 GLY ASN HIS ILE ALA TYR ASP TYR HIS PRO PRO ALA ASP SEQRES 7 A 225 LYS LEU TYR VAL GLY SER ARG VAL VAL ALA LYS TYR LYS SEQRES 8 A 225 ASP GLY ASN GLN VAL TRP LEU TYR ALA GLY ILE VAL ALA SEQRES 9 A 225 GLU THR PRO ASN VAL LYS ASN LYS LEU ARG PHE LEU ILE SEQRES 10 A 225 PHE PHE ASP ASP GLY TYR ALA SER TYR VAL THR GLN SER SEQRES 11 A 225 GLU LEU TYR PRO ILE CYS ARG PRO LEU LYS LYS THR TRP SEQRES 12 A 225 GLU ASP ILE GLU ASP ILE SER CYS ARG ASP PHE ILE GLU SEQRES 13 A 225 GLU TYR VAL THR ALA TYR PRO ASN ARG PRO MET VAL LEU SEQRES 14 A 225 LEU LYS SER GLY GLN LEU ILE LYS THR GLU TRP GLU GLY SEQRES 15 A 225 THR TRP TRP LYS SER ARG VAL GLU GLU VAL ASP GLY SER SEQRES 16 A 225 LEU VAL ARG ILE LEU PHE LEU ASP ASP LYS ARG CYS GLU SEQRES 17 A 225 TRP ILE TYR ARG GLY SER THR ARG LEU GLU PRO MET PHE SEQRES 18 A 225 SER MET LYS THR SEQRES 1 B 225 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 225 LEU TYR PHE GLN GLY ASP LEU ILE VAL SER MET ARG ILE SEQRES 3 B 225 LEU GLY LYS LYS ARG THR LYS THR TRP HIS LYS GLY THR SEQRES 4 B 225 LEU ILE ALA ILE GLN THR VAL GLY PRO GLY LYS LYS TYR SEQRES 5 B 225 LYS VAL LYS PHE ASP ASN LYS GLY LYS SER LEU LEU SER SEQRES 6 B 225 GLY ASN HIS ILE ALA TYR ASP TYR HIS PRO PRO ALA ASP SEQRES 7 B 225 LYS LEU TYR VAL GLY SER ARG VAL VAL ALA LYS TYR LYS SEQRES 8 B 225 ASP GLY ASN GLN VAL TRP LEU TYR ALA GLY ILE VAL ALA SEQRES 9 B 225 GLU THR PRO ASN VAL LYS ASN LYS LEU ARG PHE LEU ILE SEQRES 10 B 225 PHE PHE ASP ASP GLY TYR ALA SER TYR VAL THR GLN SER SEQRES 11 B 225 GLU LEU TYR PRO ILE CYS ARG PRO LEU LYS LYS THR TRP SEQRES 12 B 225 GLU ASP ILE GLU ASP ILE SER CYS ARG ASP PHE ILE GLU SEQRES 13 B 225 GLU TYR VAL THR ALA TYR PRO ASN ARG PRO MET VAL LEU SEQRES 14 B 225 LEU LYS SER GLY GLN LEU ILE LYS THR GLU TRP GLU GLY SEQRES 15 B 225 THR TRP TRP LYS SER ARG VAL GLU GLU VAL ASP GLY SER SEQRES 16 B 225 LEU VAL ARG ILE LEU PHE LEU ASP ASP LYS ARG CYS GLU SEQRES 17 B 225 TRP ILE TYR ARG GLY SER THR ARG LEU GLU PRO MET PHE SEQRES 18 B 225 SER MET LYS THR HET XRU A 301 30 HET SO4 A 302 5 HET SO4 A 303 5 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET UNX A 308 1 HET UNX A 309 1 HET XRU B 301 30 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET EDO B 306 4 HET EDO B 307 4 HET EDO B 308 4 HET UNX B 309 1 HETNAM XRU (3S)-N-(4-CHLORO-3-{[2-(DIETHYLAMINO) HETNAM 2 XRU ETHYL]CARBAMOYL}PHENYL)-3-(DIETHYLAMINO)PYRROLIDINE-1- HETNAM 3 XRU CARBOXAMIDE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 XRU 2(C22 H36 CL N5 O2) FORMUL 4 SO4 6(O4 S 2-) FORMUL 6 EDO 7(C2 H6 O2) FORMUL 10 UNX 3(X) FORMUL 21 HOH *197(H2 O) HELIX 1 AA1 SER A 54 ASN A 56 5 3 HELIX 2 AA2 PRO A 65 LEU A 69 5 5 HELIX 3 AA3 THR A 117 SER A 119 5 3 HELIX 4 AA4 LYS A 130 ILE A 135 5 6 HELIX 5 AA5 ASP A 137 TYR A 151 1 15 HELIX 6 AA6 LEU A 206 MET A 212 1 7 HELIX 7 AA7 SER B 54 ASN B 56 5 3 HELIX 8 AA8 PRO B 65 LEU B 69 5 5 HELIX 9 AA9 THR B 117 SER B 119 5 3 HELIX 10 AB1 LYS B 130 ILE B 135 5 6 HELIX 11 AB2 ASP B 137 TYR B 151 1 15 HELIX 12 AB3 LEU B 206 MET B 212 1 7 SHEET 1 AA1 4 ASN A 2 LEU A 3 0 SHEET 2 AA1 4 TRP A 24 VAL A 35 -1 O ILE A 32 N LEU A 3 SHEET 3 AA1 4 GLY A 38 PHE A 45 -1 O LYS A 40 N GLN A 33 SHEET 4 AA1 4 LYS A 50 LEU A 53 -1 O LEU A 53 N TYR A 41 SHEET 1 AA2 4 ASN A 2 LEU A 3 0 SHEET 2 AA2 4 TRP A 24 VAL A 35 -1 O ILE A 32 N LEU A 3 SHEET 3 AA2 4 ARG A 14 LYS A 18 -1 N ILE A 15 O GLY A 27 SHEET 4 AA2 4 ILE A 58 TYR A 60 -1 O ALA A 59 N LEU A 16 SHEET 1 AA3 2 PHE A 5 GLN A 6 0 SHEET 2 AA3 2 LEU A 9 ILE A 10 -1 O LEU A 9 N GLN A 6 SHEET 1 AA4 5 ALA A 113 VAL A 116 0 SHEET 2 AA4 5 PHE A 104 PHE A 108 -1 N ILE A 106 O SER A 114 SHEET 3 AA4 5 VAL A 85 GLU A 94 -1 N ALA A 93 O LEU A 105 SHEET 4 AA4 5 ARG A 74 LYS A 80 -1 N TYR A 79 O TRP A 86 SHEET 5 AA4 5 LEU A 121 PRO A 123 -1 O TYR A 122 N VAL A 76 SHEET 1 AA5 4 LEU A 164 TRP A 169 0 SHEET 2 AA5 4 THR A 172 ASP A 182 -1 O TRP A 174 N THR A 167 SHEET 3 AA5 4 LEU A 185 PHE A 190 -1 O ARG A 187 N GLU A 179 SHEET 4 AA5 4 ARG A 195 TYR A 200 -1 O ARG A 195 N PHE A 190 SHEET 1 AA6 4 ASN B 2 LEU B 3 0 SHEET 2 AA6 4 TRP B 24 VAL B 35 -1 O ILE B 32 N LEU B 3 SHEET 3 AA6 4 GLY B 38 PHE B 45 -1 O LYS B 40 N GLN B 33 SHEET 4 AA6 4 LYS B 50 LEU B 53 -1 O LEU B 53 N TYR B 41 SHEET 1 AA7 4 ASN B 2 LEU B 3 0 SHEET 2 AA7 4 TRP B 24 VAL B 35 -1 O ILE B 32 N LEU B 3 SHEET 3 AA7 4 ARG B 14 LYS B 18 -1 N GLY B 17 O HIS B 25 SHEET 4 AA7 4 ILE B 58 TYR B 60 -1 O ALA B 59 N LEU B 16 SHEET 1 AA8 2 PHE B 5 GLN B 6 0 SHEET 2 AA8 2 LEU B 9 ILE B 10 -1 O LEU B 9 N GLN B 6 SHEET 1 AA9 5 ALA B 113 VAL B 116 0 SHEET 2 AA9 5 PHE B 104 PHE B 108 -1 N ILE B 106 O SER B 114 SHEET 3 AA9 5 VAL B 85 GLU B 94 -1 N ALA B 93 O LEU B 105 SHEET 4 AA9 5 ARG B 74 LYS B 80 -1 N VAL B 75 O GLY B 90 SHEET 5 AA9 5 LEU B 121 PRO B 123 -1 O TYR B 122 N VAL B 76 SHEET 1 AB1 4 LEU B 164 TRP B 169 0 SHEET 2 AB1 4 THR B 172 ASP B 182 -1 O TRP B 174 N THR B 167 SHEET 3 AB1 4 LEU B 185 PHE B 190 -1 O LEU B 189 N ARG B 177 SHEET 4 AB1 4 ARG B 195 TYR B 200 -1 O GLU B 197 N ILE B 188 CISPEP 1 TYR A 151 PRO A 152 0 2.79 CISPEP 2 TYR B 151 PRO B 152 0 6.63 CRYST1 63.285 141.700 55.517 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018013 0.00000