HEADER SUGAR BINDING PROTEIN 09-NOV-23 8UX7 TITLE DIOCLEA MEGACARPA LECTIN (DMEGA) COMPLEXED WITH X-MAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIOCLEA MEGACARPA LECTIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACROPSYCHANTHUS MEGACARPUS; SOURCE 3 ORGANISM_TAXID: 232298 KEYWDS LECTIN, LEGUME, CONA-LIKE, DIOCLEA, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.V.OLIVEIRA,G.DE SLOOVER,V.J.S.OSTERNE,V.R.PINTO-JUNIOR, AUTHOR 2 J.C.SACRAMENTO-NETO,E.J.M.VAN DAMME,K.S.NASCIMENTO,B.S.CAVADA REVDAT 1 29-NOV-23 8UX7 0 JRNL AUTH M.V.OLIVEIRA,G.DE SLOOVER,V.J.S.OSTERNE,V.R.PINTO-JUNIOR, JRNL AUTH 2 J.C.SACRAMENTO-NETO,E.J.M.VAN DAMME,K.S.NASCIMENTO, JRNL AUTH 3 B.S.CAVADA JRNL TITL DIOCLEA MEGACARPA LECTIN (DMEGA) COMPLEXED WITH X-MAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.017 REMARK 3 FREE R VALUE TEST SET COUNT : 1593 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2205 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.4020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.00700 REMARK 3 B33 (A**2) : 0.01300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3685 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3360 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5023 ; 1.477 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7768 ; 0.498 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 8.496 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ;29.591 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;13.958 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4284 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 828 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 697 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 109 ; 0.148 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1840 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 11 ; 0.161 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1852 ; 4.372 ; 5.050 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1852 ; 4.368 ; 5.050 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2308 ; 6.134 ; 9.048 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2309 ; 6.135 ; 9.049 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1833 ; 4.956 ; 5.447 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1834 ; 4.955 ; 5.448 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2715 ; 7.220 ; 9.786 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2716 ; 7.219 ; 9.786 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8UX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000279077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.46 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.4.0 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31790 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.661 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 1.14800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1M TRIS PH 8.5, 0.5% PEGME 5000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.67500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.70700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.18200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.67500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.70700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.18200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.67500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.70700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.18200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.67500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.70700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.18200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.35000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 118 REMARK 465 SER A 119 REMARK 465 ALA A 120 REMARK 465 ALA A 121 REMARK 465 ASP A 122 REMARK 465 ASN B 118 REMARK 465 SER B 119 REMARK 465 ALA B 120 REMARK 465 ALA B 121 REMARK 465 ASP B 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 30 18.96 59.49 REMARK 500 ASN B 14 75.70 -106.18 REMARK 500 MET B 42 150.92 -45.83 REMARK 500 THR B 44 125.61 -33.64 REMARK 500 ASN B 104 66.50 -115.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 95.5 REMARK 620 3 ASP A 19 OD1 167.2 96.1 REMARK 620 4 HIS A 24 NE2 90.5 87.8 95.5 REMARK 620 5 HOH A 404 O 80.8 174.7 88.0 88.4 REMARK 620 6 HOH A 408 O 87.2 96.3 86.0 175.5 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 55.3 REMARK 620 3 TYR A 12 O 75.0 110.0 REMARK 620 4 ASN A 14 OD1 146.7 157.9 82.4 REMARK 620 5 ASP A 19 OD2 112.5 74.7 84.6 88.9 REMARK 620 6 HOH A 412 O 67.5 110.7 87.3 87.5 171.4 REMARK 620 7 HOH A 416 O 119.3 79.0 165.5 85.6 87.1 100.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE2 REMARK 620 2 ASP B 10 OD2 91.1 REMARK 620 3 ASP B 19 OD1 155.3 100.2 REMARK 620 4 HIS B 24 NE2 95.4 105.0 102.6 REMARK 620 5 HOH B 415 O 78.3 90.0 79.9 163.9 REMARK 620 6 HOH B 417 O 83.3 168.0 81.4 86.1 78.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 53.0 REMARK 620 3 TYR B 12 O 78.1 123.4 REMARK 620 4 ASN B 14 OD1 140.1 166.9 67.1 REMARK 620 5 ASP B 19 OD2 103.3 80.4 85.9 93.4 REMARK 620 6 HOH B 413 O 117.0 70.0 165.0 98.7 90.1 REMARK 620 7 HOH B 425 O 75.1 100.3 91.5 86.5 177.2 92.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 304 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 31 O REMARK 620 2 ARG B 33 O 106.9 REMARK 620 N 1 DBREF 8UX7 A 1 237 PDB 8UX7 8UX7 1 237 DBREF 8UX7 B 1 237 PDB 8UX7 8UX7 1 237 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP SER TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO ASN TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER ILE ARG SER LYS SER THR ALA ARG SEQRES 4 A 237 TRP ASN MET GLN THR GLY LYS VAL GLY THR VAL HIS ILE SEQRES 5 A 237 SER TYR ASN SER VAL ALA LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR SER GLY SER SER SER THR THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASN ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA THR THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS THR SEQRES 10 A 237 ASN SER ALA ALA ASP GLU ASN SER LEU HIS PHE SER PHE SEQRES 11 A 237 HIS LYS PHE SER GLN ASN PRO LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA PHE THR ASP SER ASP GLY ASN LEU GLN LEU SEQRES 13 A 237 THR LYS VAL SER SER SER GLY ASP PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU LYS SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP ARG GLU PRO ALA ASP SEQRES 17 A 237 GLY ILE THR PHE PHE ILE ALA ASN THR ASP THR SER ILE SEQRES 18 A 237 PRO SER GLY SER GLY GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP SER TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO ASN TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER ILE ARG SER LYS SER THR ALA ARG SEQRES 4 B 237 TRP ASN MET GLN THR GLY LYS VAL GLY THR VAL HIS ILE SEQRES 5 B 237 SER TYR ASN SER VAL ALA LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR SER GLY SER SER SER THR THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASN ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 B 237 GLY LEU SER ALA THR THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS THR SEQRES 10 B 237 ASN SER ALA ALA ASP GLU ASN SER LEU HIS PHE SER PHE SEQRES 11 B 237 HIS LYS PHE SER GLN ASN PRO LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA PHE THR ASP SER ASP GLY ASN LEU GLN LEU SEQRES 13 B 237 THR LYS VAL SER SER SER GLY ASP PRO GLN GLY SER SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU LYS SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP ARG GLU PRO ALA ASP SEQRES 17 B 237 GLY ILE THR PHE PHE ILE ALA ASN THR ASP THR SER ILE SEQRES 18 B 237 PRO SER GLY SER GLY GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN HET MN A 301 1 HET CA A 302 1 HET XMM A 303 23 HET GOL A 304 6 HET MN B 301 1 HET CA B 302 1 HET XMM B 303 23 HET K B 304 1 HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETNAM XMM 5-BROMO-4-CHLORO-1H-INDOL-3-YL ALPHA-D-MANNOPYRANOSIDE HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETSYN XMM (2R,3S,4S,5S,6R)-2-(5-BROMO-4-CHLORO-1H-INDOL-3-YLOXY)- HETSYN 2 XMM TETRAHYDRO-6-(HYDROXYMETHYL)-2H-PYRAN-3,4,5-TRIOL; (5- HETSYN 3 XMM BROMO-4-CHLORO-3-INDOLYL)-ALPHA-D-MANNOSE; 5-BROMO-4- HETSYN 4 XMM CHLORO-1H-INDOL-3-YL ALPHA-D-MANNOSIDE; 5-BROMO-4- HETSYN 5 XMM CHLORO-1H-INDOL-3-YL D-MANNOSIDE; 5-BROMO-4-CHLORO-1H- HETSYN 6 XMM INDOL-3-YL MANNOSIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 2(MN 2+) FORMUL 4 CA 2(CA 2+) FORMUL 5 XMM 2(C14 H15 BR CL N O6) FORMUL 6 GOL C3 H8 O3 FORMUL 10 K K 1+ FORMUL 11 HOH *85(H2 O) HELIX 1 AA1 ASN A 14 GLY A 18 5 5 HELIX 2 AA2 ASP A 80 VAL A 84 5 5 HELIX 3 AA3 GLY A 226 LEU A 230 5 5 HELIX 4 AA4 ASN B 14 GLY B 18 5 5 HELIX 5 AA5 ASP B 80 VAL B 84 5 5 HELIX 6 AA6 GLY B 226 LEU B 230 5 5 SHEET 1 AA1 7 SER A 36 ARG A 39 0 SHEET 2 AA1 7 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA1 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA1 7 GLY A 209 ALA A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 AA1 7 TRP A 88 THR A 96 -1 N GLY A 92 O PHE A 213 SHEET 6 AA1 7 VAL A 170 PHE A 175 -1 O PHE A 175 N VAL A 91 SHEET 7 AA1 7 LEU A 140 GLY A 144 -1 N GLN A 143 O ARG A 172 SHEET 1 AA2 6 SER A 36 ARG A 39 0 SHEET 2 AA2 6 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA2 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA2 6 GLY A 209 ALA A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 AA2 6 TRP A 88 THR A 96 -1 N GLY A 92 O PHE A 213 SHEET 6 AA2 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 AA3 6 THR A 73 ASP A 78 0 SHEET 2 AA3 6 ARG A 60 TYR A 67 -1 N LEU A 61 O TYR A 77 SHEET 3 AA3 6 VAL A 47 ASN A 55 -1 N THR A 49 O SER A 66 SHEET 4 AA3 6 VAL A 188 LEU A 198 -1 O PHE A 195 N VAL A 50 SHEET 5 AA3 6 THR A 105 LYS A 116 -1 N LYS A 116 O VAL A 188 SHEET 6 AA3 6 ASN A 124 PHE A 130 -1 O PHE A 130 N TRP A 109 SHEET 1 AA4 7 THR A 73 ASP A 78 0 SHEET 2 AA4 7 ARG A 60 TYR A 67 -1 N LEU A 61 O TYR A 77 SHEET 3 AA4 7 VAL A 47 ASN A 55 -1 N THR A 49 O SER A 66 SHEET 4 AA4 7 VAL A 188 LEU A 198 -1 O PHE A 195 N VAL A 50 SHEET 5 AA4 7 THR A 105 LYS A 116 -1 N LYS A 116 O VAL A 188 SHEET 6 AA4 7 LEU A 154 GLN A 155 -1 O LEU A 154 N ILE A 106 SHEET 7 AA4 7 PHE A 147 THR A 148 -1 N PHE A 147 O GLN A 155 SHEET 1 AA5 7 SER B 36 ARG B 39 0 SHEET 2 AA5 7 HIS B 24 ILE B 29 -1 N ILE B 25 O ALA B 38 SHEET 3 AA5 7 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA5 7 GLY B 209 ALA B 215 -1 O ILE B 210 N LEU B 9 SHEET 5 AA5 7 TRP B 88 THR B 96 -1 N GLY B 92 O PHE B 213 SHEET 6 AA5 7 VAL B 170 PHE B 175 -1 O ALA B 173 N LEU B 93 SHEET 7 AA5 7 LEU B 140 GLY B 144 -1 N ILE B 141 O LEU B 174 SHEET 1 AA6 6 SER B 36 ARG B 39 0 SHEET 2 AA6 6 HIS B 24 ILE B 29 -1 N ILE B 25 O ALA B 38 SHEET 3 AA6 6 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA6 6 GLY B 209 ALA B 215 -1 O ILE B 210 N LEU B 9 SHEET 5 AA6 6 TRP B 88 THR B 96 -1 N GLY B 92 O PHE B 213 SHEET 6 AA6 6 VAL B 179 HIS B 180 -1 O VAL B 179 N VAL B 89 SHEET 1 AA7 6 THR B 73 ASP B 78 0 SHEET 2 AA7 6 ARG B 60 TYR B 67 -1 N VAL B 65 O THR B 73 SHEET 3 AA7 6 VAL B 47 ASN B 55 -1 N THR B 49 O SER B 66 SHEET 4 AA7 6 VAL B 188 LEU B 198 -1 O ALA B 193 N ILE B 52 SHEET 5 AA7 6 THR B 105 LYS B 116 -1 N SER B 110 O THR B 194 SHEET 6 AA7 6 ASN B 124 PHE B 130 -1 O ASN B 124 N LEU B 115 SHEET 1 AA8 7 THR B 73 ASP B 78 0 SHEET 2 AA8 7 ARG B 60 TYR B 67 -1 N VAL B 65 O THR B 73 SHEET 3 AA8 7 VAL B 47 ASN B 55 -1 N THR B 49 O SER B 66 SHEET 4 AA8 7 VAL B 188 LEU B 198 -1 O ALA B 193 N ILE B 52 SHEET 5 AA8 7 THR B 105 LYS B 116 -1 N SER B 110 O THR B 194 SHEET 6 AA8 7 LEU B 154 GLN B 155 -1 O LEU B 154 N ILE B 106 SHEET 7 AA8 7 PHE B 147 THR B 148 -1 N PHE B 147 O GLN B 155 LINK OE2 GLU A 8 MN MN A 301 1555 1555 2.17 LINK OD2 ASP A 10 MN MN A 301 1555 1555 2.03 LINK OD1 ASP A 10 CA CA A 302 1555 1555 2.34 LINK OD2 ASP A 10 CA CA A 302 1555 1555 2.46 LINK O TYR A 12 CA CA A 302 1555 1555 2.32 LINK OD1 ASN A 14 CA CA A 302 1555 1555 2.38 LINK OD1 ASP A 19 MN MN A 301 1555 1555 2.21 LINK OD2 ASP A 19 CA CA A 302 1555 1555 2.35 LINK NE2 HIS A 24 MN MN A 301 1555 1555 2.11 LINK MN MN A 301 O HOH A 404 1555 1555 1.97 LINK MN MN A 301 O HOH A 408 1555 1555 2.15 LINK CA CA A 302 O HOH A 412 1555 1555 2.33 LINK CA CA A 302 O HOH A 416 1555 1555 2.36 LINK OE2 GLU B 8 MN MN B 301 1555 1555 2.25 LINK OD2 ASP B 10 MN MN B 301 1555 1555 2.16 LINK OD1 ASP B 10 CA CA B 302 1555 1555 2.55 LINK OD2 ASP B 10 CA CA B 302 1555 1555 2.51 LINK O TYR B 12 CA CA B 302 1555 1555 2.26 LINK OD1 ASN B 14 CA CA B 302 1555 1555 2.50 LINK OD1 ASP B 19 MN MN B 301 1555 1555 2.38 LINK OD2 ASP B 19 CA CA B 302 1555 1555 2.39 LINK NE2 HIS B 24 MN MN B 301 1555 1555 2.06 LINK O SER B 31 K K B 304 1555 1555 2.68 LINK O ARG B 33 K K B 304 1555 1555 2.53 LINK MN MN B 301 O HOH B 415 1555 1555 1.94 LINK MN MN B 301 O HOH B 417 1555 1555 1.93 LINK CA CA B 302 O HOH B 413 1555 1555 2.04 LINK CA CA B 302 O HOH B 425 1555 1555 2.53 CISPEP 1 ALA A 207 ASP A 208 0 1.31 CISPEP 2 ALA B 207 ASP B 208 0 -4.86 CRYST1 89.350 109.414 126.364 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011192 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007914 0.00000