data_8UYO # _entry.id 8UYO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8UYO pdb_00008uyo 10.2210/pdb8uyo/pdb WWPDB D_1000279154 ? ? EMDB EMD-42812 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8UYO _pdbx_database_status.recvd_initial_deposition_date 2023-11-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'PNMA2 capsid' _pdbx_database_related.db_id EMD-42812 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email zhang@broadinstitute.org _pdbx_contact_author.name_first Feng _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-0178-7995 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wilkinson, M.E.' 1 0000-0003-4738-9503 'Madigan, V.' 2 ? 'Zhang, Y.' 3 ? 'Zhang, F.' 4 0000-0003-0178-7995 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 121 _citation.language ? _citation.page_first e2307812120 _citation.page_last e2307812120 _citation.title 'Human paraneoplastic antigen Ma2 (PNMA2) forms icosahedral capsids that can be engineered for mRNA delivery.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2307812120 _citation.pdbx_database_id_PubMed 38437549 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Madigan, V.' 1 ? primary 'Zhang, Y.' 2 0000-0002-1141-5821 primary 'Raghavan, R.' 3 ? primary 'Wilkinson, M.E.' 4 0000-0003-4738-9503 primary 'Faure, G.' 5 0000-0001-9537-2277 primary 'Puccio, E.' 6 ? primary 'Segel, M.' 7 ? primary 'Lash, B.' 8 ? primary 'Macrae, R.K.' 9 0000-0002-7850-9056 primary 'Zhang, F.' 10 0000-0002-7444-1103 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Paraneoplastic antigen Ma2' _entity.formula_weight 41557.289 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name '40 kDa neuronal protein,Onconeuronal antigen Ma2,Paraneoplastic neuronal antigen MM2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MALALLEDWCRIMSVDEQKSLMVTGIPADFEEAEIQEVLQETLKSLGRYRLLGKIFRKQENANAVLLELLEDTDVSAIPS EVQGKGGVWKVIFKTPNQDTEFLERLNLFLEKEGQTVSGMFRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLPM RYRKLRVFSGSAVPAPEEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPSISVEECLEAFKQV FGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRRIADQVRLEQVMAGATLNQMLWCRLRELKDQGP PPSFLELMKVIREEEEEEASFENESIEEPEERDGYGRWNHEGDD ; _entity_poly.pdbx_seq_one_letter_code_can ;MALALLEDWCRIMSVDEQKSLMVTGIPADFEEAEIQEVLQETLKSLGRYRLLGKIFRKQENANAVLLELLEDTDVSAIPS EVQGKGGVWKVIFKTPNQDTEFLERLNLFLEKEGQTVSGMFRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLPM RYRKLRVFSGSAVPAPEEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPSISVEECLEAFKQV FGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRRIADQVRLEQVMAGATLNQMLWCRLRELKDQGP PPSFLELMKVIREEEEEEASFENESIEEPEERDGYGRWNHEGDD ; _entity_poly.pdbx_strand_id 1 _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 LEU n 1 4 ALA n 1 5 LEU n 1 6 LEU n 1 7 GLU n 1 8 ASP n 1 9 TRP n 1 10 CYS n 1 11 ARG n 1 12 ILE n 1 13 MET n 1 14 SER n 1 15 VAL n 1 16 ASP n 1 17 GLU n 1 18 GLN n 1 19 LYS n 1 20 SER n 1 21 LEU n 1 22 MET n 1 23 VAL n 1 24 THR n 1 25 GLY n 1 26 ILE n 1 27 PRO n 1 28 ALA n 1 29 ASP n 1 30 PHE n 1 31 GLU n 1 32 GLU n 1 33 ALA n 1 34 GLU n 1 35 ILE n 1 36 GLN n 1 37 GLU n 1 38 VAL n 1 39 LEU n 1 40 GLN n 1 41 GLU n 1 42 THR n 1 43 LEU n 1 44 LYS n 1 45 SER n 1 46 LEU n 1 47 GLY n 1 48 ARG n 1 49 TYR n 1 50 ARG n 1 51 LEU n 1 52 LEU n 1 53 GLY n 1 54 LYS n 1 55 ILE n 1 56 PHE n 1 57 ARG n 1 58 LYS n 1 59 GLN n 1 60 GLU n 1 61 ASN n 1 62 ALA n 1 63 ASN n 1 64 ALA n 1 65 VAL n 1 66 LEU n 1 67 LEU n 1 68 GLU n 1 69 LEU n 1 70 LEU n 1 71 GLU n 1 72 ASP n 1 73 THR n 1 74 ASP n 1 75 VAL n 1 76 SER n 1 77 ALA n 1 78 ILE n 1 79 PRO n 1 80 SER n 1 81 GLU n 1 82 VAL n 1 83 GLN n 1 84 GLY n 1 85 LYS n 1 86 GLY n 1 87 GLY n 1 88 VAL n 1 89 TRP n 1 90 LYS n 1 91 VAL n 1 92 ILE n 1 93 PHE n 1 94 LYS n 1 95 THR n 1 96 PRO n 1 97 ASN n 1 98 GLN n 1 99 ASP n 1 100 THR n 1 101 GLU n 1 102 PHE n 1 103 LEU n 1 104 GLU n 1 105 ARG n 1 106 LEU n 1 107 ASN n 1 108 LEU n 1 109 PHE n 1 110 LEU n 1 111 GLU n 1 112 LYS n 1 113 GLU n 1 114 GLY n 1 115 GLN n 1 116 THR n 1 117 VAL n 1 118 SER n 1 119 GLY n 1 120 MET n 1 121 PHE n 1 122 ARG n 1 123 ALA n 1 124 LEU n 1 125 GLY n 1 126 GLN n 1 127 GLU n 1 128 GLY n 1 129 VAL n 1 130 SER n 1 131 PRO n 1 132 ALA n 1 133 THR n 1 134 VAL n 1 135 PRO n 1 136 CYS n 1 137 ILE n 1 138 SER n 1 139 PRO n 1 140 GLU n 1 141 LEU n 1 142 LEU n 1 143 ALA n 1 144 HIS n 1 145 LEU n 1 146 LEU n 1 147 GLY n 1 148 GLN n 1 149 ALA n 1 150 MET n 1 151 ALA n 1 152 HIS n 1 153 ALA n 1 154 PRO n 1 155 GLN n 1 156 PRO n 1 157 LEU n 1 158 LEU n 1 159 PRO n 1 160 MET n 1 161 ARG n 1 162 TYR n 1 163 ARG n 1 164 LYS n 1 165 LEU n 1 166 ARG n 1 167 VAL n 1 168 PHE n 1 169 SER n 1 170 GLY n 1 171 SER n 1 172 ALA n 1 173 VAL n 1 174 PRO n 1 175 ALA n 1 176 PRO n 1 177 GLU n 1 178 GLU n 1 179 GLU n 1 180 SER n 1 181 PHE n 1 182 GLU n 1 183 VAL n 1 184 TRP n 1 185 LEU n 1 186 GLU n 1 187 GLN n 1 188 ALA n 1 189 THR n 1 190 GLU n 1 191 ILE n 1 192 VAL n 1 193 LYS n 1 194 GLU n 1 195 TRP n 1 196 PRO n 1 197 VAL n 1 198 THR n 1 199 GLU n 1 200 ALA n 1 201 GLU n 1 202 LYS n 1 203 LYS n 1 204 ARG n 1 205 TRP n 1 206 LEU n 1 207 ALA n 1 208 GLU n 1 209 SER n 1 210 LEU n 1 211 ARG n 1 212 GLY n 1 213 PRO n 1 214 ALA n 1 215 LEU n 1 216 ASP n 1 217 LEU n 1 218 MET n 1 219 HIS n 1 220 ILE n 1 221 VAL n 1 222 GLN n 1 223 ALA n 1 224 ASP n 1 225 ASN n 1 226 PRO n 1 227 SER n 1 228 ILE n 1 229 SER n 1 230 VAL n 1 231 GLU n 1 232 GLU n 1 233 CYS n 1 234 LEU n 1 235 GLU n 1 236 ALA n 1 237 PHE n 1 238 LYS n 1 239 GLN n 1 240 VAL n 1 241 PHE n 1 242 GLY n 1 243 SER n 1 244 LEU n 1 245 GLU n 1 246 SER n 1 247 ARG n 1 248 ARG n 1 249 THR n 1 250 ALA n 1 251 GLN n 1 252 VAL n 1 253 ARG n 1 254 TYR n 1 255 LEU n 1 256 LYS n 1 257 THR n 1 258 TYR n 1 259 GLN n 1 260 GLU n 1 261 GLU n 1 262 GLY n 1 263 GLU n 1 264 LYS n 1 265 VAL n 1 266 SER n 1 267 ALA n 1 268 TYR n 1 269 VAL n 1 270 LEU n 1 271 ARG n 1 272 LEU n 1 273 GLU n 1 274 THR n 1 275 LEU n 1 276 LEU n 1 277 ARG n 1 278 ARG n 1 279 ALA n 1 280 VAL n 1 281 GLU n 1 282 LYS n 1 283 ARG n 1 284 ALA n 1 285 ILE n 1 286 PRO n 1 287 ARG n 1 288 ARG n 1 289 ILE n 1 290 ALA n 1 291 ASP n 1 292 GLN n 1 293 VAL n 1 294 ARG n 1 295 LEU n 1 296 GLU n 1 297 GLN n 1 298 VAL n 1 299 MET n 1 300 ALA n 1 301 GLY n 1 302 ALA n 1 303 THR n 1 304 LEU n 1 305 ASN n 1 306 GLN n 1 307 MET n 1 308 LEU n 1 309 TRP n 1 310 CYS n 1 311 ARG n 1 312 LEU n 1 313 ARG n 1 314 GLU n 1 315 LEU n 1 316 LYS n 1 317 ASP n 1 318 GLN n 1 319 GLY n 1 320 PRO n 1 321 PRO n 1 322 PRO n 1 323 SER n 1 324 PHE n 1 325 LEU n 1 326 GLU n 1 327 LEU n 1 328 MET n 1 329 LYS n 1 330 VAL n 1 331 ILE n 1 332 ARG n 1 333 GLU n 1 334 GLU n 1 335 GLU n 1 336 GLU n 1 337 GLU n 1 338 GLU n 1 339 ALA n 1 340 SER n 1 341 PHE n 1 342 GLU n 1 343 ASN n 1 344 GLU n 1 345 SER n 1 346 ILE n 1 347 GLU n 1 348 GLU n 1 349 PRO n 1 350 GLU n 1 351 GLU n 1 352 ARG n 1 353 ASP n 1 354 GLY n 1 355 TYR n 1 356 GLY n 1 357 ARG n 1 358 TRP n 1 359 ASN n 1 360 HIS n 1 361 GLU n 1 362 GLY n 1 363 ASP n 1 364 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 364 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PNMA2, KIAA0883, MA2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta 2 (DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? 1 . n A 1 2 ALA 2 2 ? ? ? 1 . n A 1 3 LEU 3 3 ? ? ? 1 . n A 1 4 ALA 4 4 ? ? ? 1 . n A 1 5 LEU 5 5 ? ? ? 1 . n A 1 6 LEU 6 6 ? ? ? 1 . n A 1 7 GLU 7 7 ? ? ? 1 . n A 1 8 ASP 8 8 ? ? ? 1 . n A 1 9 TRP 9 9 ? ? ? 1 . n A 1 10 CYS 10 10 ? ? ? 1 . n A 1 11 ARG 11 11 ? ? ? 1 . n A 1 12 ILE 12 12 ? ? ? 1 . n A 1 13 MET 13 13 ? ? ? 1 . n A 1 14 SER 14 14 ? ? ? 1 . n A 1 15 VAL 15 15 ? ? ? 1 . n A 1 16 ASP 16 16 ? ? ? 1 . n A 1 17 GLU 17 17 ? ? ? 1 . n A 1 18 GLN 18 18 ? ? ? 1 . n A 1 19 LYS 19 19 ? ? ? 1 . n A 1 20 SER 20 20 ? ? ? 1 . n A 1 21 LEU 21 21 ? ? ? 1 . n A 1 22 MET 22 22 ? ? ? 1 . n A 1 23 VAL 23 23 ? ? ? 1 . n A 1 24 THR 24 24 ? ? ? 1 . n A 1 25 GLY 25 25 ? ? ? 1 . n A 1 26 ILE 26 26 ? ? ? 1 . n A 1 27 PRO 27 27 ? ? ? 1 . n A 1 28 ALA 28 28 ? ? ? 1 . n A 1 29 ASP 29 29 ? ? ? 1 . n A 1 30 PHE 30 30 ? ? ? 1 . n A 1 31 GLU 31 31 ? ? ? 1 . n A 1 32 GLU 32 32 ? ? ? 1 . n A 1 33 ALA 33 33 ? ? ? 1 . n A 1 34 GLU 34 34 ? ? ? 1 . n A 1 35 ILE 35 35 ? ? ? 1 . n A 1 36 GLN 36 36 ? ? ? 1 . n A 1 37 GLU 37 37 ? ? ? 1 . n A 1 38 VAL 38 38 ? ? ? 1 . n A 1 39 LEU 39 39 ? ? ? 1 . n A 1 40 GLN 40 40 ? ? ? 1 . n A 1 41 GLU 41 41 ? ? ? 1 . n A 1 42 THR 42 42 ? ? ? 1 . n A 1 43 LEU 43 43 ? ? ? 1 . n A 1 44 LYS 44 44 ? ? ? 1 . n A 1 45 SER 45 45 ? ? ? 1 . n A 1 46 LEU 46 46 ? ? ? 1 . n A 1 47 GLY 47 47 ? ? ? 1 . n A 1 48 ARG 48 48 ? ? ? 1 . n A 1 49 TYR 49 49 ? ? ? 1 . n A 1 50 ARG 50 50 ? ? ? 1 . n A 1 51 LEU 51 51 ? ? ? 1 . n A 1 52 LEU 52 52 ? ? ? 1 . n A 1 53 GLY 53 53 ? ? ? 1 . n A 1 54 LYS 54 54 ? ? ? 1 . n A 1 55 ILE 55 55 ? ? ? 1 . n A 1 56 PHE 56 56 ? ? ? 1 . n A 1 57 ARG 57 57 ? ? ? 1 . n A 1 58 LYS 58 58 ? ? ? 1 . n A 1 59 GLN 59 59 ? ? ? 1 . n A 1 60 GLU 60 60 ? ? ? 1 . n A 1 61 ASN 61 61 ? ? ? 1 . n A 1 62 ALA 62 62 ? ? ? 1 . n A 1 63 ASN 63 63 ? ? ? 1 . n A 1 64 ALA 64 64 ? ? ? 1 . n A 1 65 VAL 65 65 ? ? ? 1 . n A 1 66 LEU 66 66 ? ? ? 1 . n A 1 67 LEU 67 67 ? ? ? 1 . n A 1 68 GLU 68 68 ? ? ? 1 . n A 1 69 LEU 69 69 ? ? ? 1 . n A 1 70 LEU 70 70 ? ? ? 1 . n A 1 71 GLU 71 71 ? ? ? 1 . n A 1 72 ASP 72 72 ? ? ? 1 . n A 1 73 THR 73 73 ? ? ? 1 . n A 1 74 ASP 74 74 ? ? ? 1 . n A 1 75 VAL 75 75 ? ? ? 1 . n A 1 76 SER 76 76 ? ? ? 1 . n A 1 77 ALA 77 77 ? ? ? 1 . n A 1 78 ILE 78 78 ? ? ? 1 . n A 1 79 PRO 79 79 ? ? ? 1 . n A 1 80 SER 80 80 ? ? ? 1 . n A 1 81 GLU 81 81 ? ? ? 1 . n A 1 82 VAL 82 82 ? ? ? 1 . n A 1 83 GLN 83 83 ? ? ? 1 . n A 1 84 GLY 84 84 ? ? ? 1 . n A 1 85 LYS 85 85 ? ? ? 1 . n A 1 86 GLY 86 86 ? ? ? 1 . n A 1 87 GLY 87 87 ? ? ? 1 . n A 1 88 VAL 88 88 ? ? ? 1 . n A 1 89 TRP 89 89 ? ? ? 1 . n A 1 90 LYS 90 90 ? ? ? 1 . n A 1 91 VAL 91 91 ? ? ? 1 . n A 1 92 ILE 92 92 ? ? ? 1 . n A 1 93 PHE 93 93 ? ? ? 1 . n A 1 94 LYS 94 94 ? ? ? 1 . n A 1 95 THR 95 95 ? ? ? 1 . n A 1 96 PRO 96 96 ? ? ? 1 . n A 1 97 ASN 97 97 ? ? ? 1 . n A 1 98 GLN 98 98 ? ? ? 1 . n A 1 99 ASP 99 99 ? ? ? 1 . n A 1 100 THR 100 100 ? ? ? 1 . n A 1 101 GLU 101 101 ? ? ? 1 . n A 1 102 PHE 102 102 ? ? ? 1 . n A 1 103 LEU 103 103 ? ? ? 1 . n A 1 104 GLU 104 104 ? ? ? 1 . n A 1 105 ARG 105 105 ? ? ? 1 . n A 1 106 LEU 106 106 ? ? ? 1 . n A 1 107 ASN 107 107 ? ? ? 1 . n A 1 108 LEU 108 108 ? ? ? 1 . n A 1 109 PHE 109 109 ? ? ? 1 . n A 1 110 LEU 110 110 ? ? ? 1 . n A 1 111 GLU 111 111 ? ? ? 1 . n A 1 112 LYS 112 112 ? ? ? 1 . n A 1 113 GLU 113 113 ? ? ? 1 . n A 1 114 GLY 114 114 ? ? ? 1 . n A 1 115 GLN 115 115 ? ? ? 1 . n A 1 116 THR 116 116 ? ? ? 1 . n A 1 117 VAL 117 117 ? ? ? 1 . n A 1 118 SER 118 118 ? ? ? 1 . n A 1 119 GLY 119 119 ? ? ? 1 . n A 1 120 MET 120 120 ? ? ? 1 . n A 1 121 PHE 121 121 ? ? ? 1 . n A 1 122 ARG 122 122 ? ? ? 1 . n A 1 123 ALA 123 123 ? ? ? 1 . n A 1 124 LEU 124 124 ? ? ? 1 . n A 1 125 GLY 125 125 ? ? ? 1 . n A 1 126 GLN 126 126 ? ? ? 1 . n A 1 127 GLU 127 127 ? ? ? 1 . n A 1 128 GLY 128 128 ? ? ? 1 . n A 1 129 VAL 129 129 ? ? ? 1 . n A 1 130 SER 130 130 ? ? ? 1 . n A 1 131 PRO 131 131 ? ? ? 1 . n A 1 132 ALA 132 132 ? ? ? 1 . n A 1 133 THR 133 133 ? ? ? 1 . n A 1 134 VAL 134 134 ? ? ? 1 . n A 1 135 PRO 135 135 ? ? ? 1 . n A 1 136 CYS 136 136 ? ? ? 1 . n A 1 137 ILE 137 137 ? ? ? 1 . n A 1 138 SER 138 138 ? ? ? 1 . n A 1 139 PRO 139 139 ? ? ? 1 . n A 1 140 GLU 140 140 ? ? ? 1 . n A 1 141 LEU 141 141 ? ? ? 1 . n A 1 142 LEU 142 142 ? ? ? 1 . n A 1 143 ALA 143 143 ? ? ? 1 . n A 1 144 HIS 144 144 ? ? ? 1 . n A 1 145 LEU 145 145 ? ? ? 1 . n A 1 146 LEU 146 146 ? ? ? 1 . n A 1 147 GLY 147 147 ? ? ? 1 . n A 1 148 GLN 148 148 ? ? ? 1 . n A 1 149 ALA 149 149 ? ? ? 1 . n A 1 150 MET 150 150 ? ? ? 1 . n A 1 151 ALA 151 151 ? ? ? 1 . n A 1 152 HIS 152 152 ? ? ? 1 . n A 1 153 ALA 153 153 ? ? ? 1 . n A 1 154 PRO 154 154 ? ? ? 1 . n A 1 155 GLN 155 155 ? ? ? 1 . n A 1 156 PRO 156 156 ? ? ? 1 . n A 1 157 LEU 157 157 ? ? ? 1 . n A 1 158 LEU 158 158 158 LEU LEU 1 . n A 1 159 PRO 159 159 159 PRO PRO 1 . n A 1 160 MET 160 160 160 MET MET 1 . n A 1 161 ARG 161 161 161 ARG ARG 1 . n A 1 162 TYR 162 162 162 TYR TYR 1 . n A 1 163 ARG 163 163 163 ARG ARG 1 . n A 1 164 LYS 164 164 164 LYS LYS 1 . n A 1 165 LEU 165 165 165 LEU LEU 1 . n A 1 166 ARG 166 166 166 ARG ARG 1 . n A 1 167 VAL 167 167 167 VAL VAL 1 . n A 1 168 PHE 168 168 168 PHE PHE 1 . n A 1 169 SER 169 169 169 SER SER 1 . n A 1 170 GLY 170 170 170 GLY GLY 1 . n A 1 171 SER 171 171 171 SER SER 1 . n A 1 172 ALA 172 172 172 ALA ALA 1 . n A 1 173 VAL 173 173 173 VAL VAL 1 . n A 1 174 PRO 174 174 174 PRO PRO 1 . n A 1 175 ALA 175 175 175 ALA ALA 1 . n A 1 176 PRO 176 176 176 PRO PRO 1 . n A 1 177 GLU 177 177 177 GLU GLU 1 . n A 1 178 GLU 178 178 178 GLU GLU 1 . n A 1 179 GLU 179 179 179 GLU GLU 1 . n A 1 180 SER 180 180 180 SER SER 1 . n A 1 181 PHE 181 181 181 PHE PHE 1 . n A 1 182 GLU 182 182 182 GLU GLU 1 . n A 1 183 VAL 183 183 183 VAL VAL 1 . n A 1 184 TRP 184 184 184 TRP TRP 1 . n A 1 185 LEU 185 185 185 LEU LEU 1 . n A 1 186 GLU 186 186 186 GLU GLU 1 . n A 1 187 GLN 187 187 187 GLN GLN 1 . n A 1 188 ALA 188 188 188 ALA ALA 1 . n A 1 189 THR 189 189 189 THR THR 1 . n A 1 190 GLU 190 190 190 GLU GLU 1 . n A 1 191 ILE 191 191 191 ILE ILE 1 . n A 1 192 VAL 192 192 192 VAL VAL 1 . n A 1 193 LYS 193 193 193 LYS LYS 1 . n A 1 194 GLU 194 194 194 GLU GLU 1 . n A 1 195 TRP 195 195 195 TRP TRP 1 . n A 1 196 PRO 196 196 196 PRO PRO 1 . n A 1 197 VAL 197 197 197 VAL VAL 1 . n A 1 198 THR 198 198 198 THR THR 1 . n A 1 199 GLU 199 199 199 GLU GLU 1 . n A 1 200 ALA 200 200 200 ALA ALA 1 . n A 1 201 GLU 201 201 201 GLU GLU 1 . n A 1 202 LYS 202 202 202 LYS LYS 1 . n A 1 203 LYS 203 203 203 LYS LYS 1 . n A 1 204 ARG 204 204 204 ARG ARG 1 . n A 1 205 TRP 205 205 205 TRP TRP 1 . n A 1 206 LEU 206 206 206 LEU LEU 1 . n A 1 207 ALA 207 207 207 ALA ALA 1 . n A 1 208 GLU 208 208 208 GLU GLU 1 . n A 1 209 SER 209 209 209 SER SER 1 . n A 1 210 LEU 210 210 210 LEU LEU 1 . n A 1 211 ARG 211 211 211 ARG ARG 1 . n A 1 212 GLY 212 212 212 GLY GLY 1 . n A 1 213 PRO 213 213 213 PRO PRO 1 . n A 1 214 ALA 214 214 214 ALA ALA 1 . n A 1 215 LEU 215 215 215 LEU LEU 1 . n A 1 216 ASP 216 216 216 ASP ASP 1 . n A 1 217 LEU 217 217 217 LEU LEU 1 . n A 1 218 MET 218 218 218 MET MET 1 . n A 1 219 HIS 219 219 219 HIS HIS 1 . n A 1 220 ILE 220 220 220 ILE ILE 1 . n A 1 221 VAL 221 221 221 VAL VAL 1 . n A 1 222 GLN 222 222 222 GLN GLN 1 . n A 1 223 ALA 223 223 223 ALA ALA 1 . n A 1 224 ASP 224 224 224 ASP ASP 1 . n A 1 225 ASN 225 225 225 ASN ASN 1 . n A 1 226 PRO 226 226 226 PRO PRO 1 . n A 1 227 SER 227 227 227 SER SER 1 . n A 1 228 ILE 228 228 228 ILE ILE 1 . n A 1 229 SER 229 229 229 SER SER 1 . n A 1 230 VAL 230 230 230 VAL VAL 1 . n A 1 231 GLU 231 231 231 GLU GLU 1 . n A 1 232 GLU 232 232 232 GLU GLU 1 . n A 1 233 CYS 233 233 233 CYS CYS 1 . n A 1 234 LEU 234 234 234 LEU LEU 1 . n A 1 235 GLU 235 235 235 GLU GLU 1 . n A 1 236 ALA 236 236 236 ALA ALA 1 . n A 1 237 PHE 237 237 237 PHE PHE 1 . n A 1 238 LYS 238 238 238 LYS LYS 1 . n A 1 239 GLN 239 239 239 GLN GLN 1 . n A 1 240 VAL 240 240 240 VAL VAL 1 . n A 1 241 PHE 241 241 241 PHE PHE 1 . n A 1 242 GLY 242 242 242 GLY GLY 1 . n A 1 243 SER 243 243 243 SER SER 1 . n A 1 244 LEU 244 244 244 LEU LEU 1 . n A 1 245 GLU 245 245 245 GLU GLU 1 . n A 1 246 SER 246 246 246 SER SER 1 . n A 1 247 ARG 247 247 247 ARG ARG 1 . n A 1 248 ARG 248 248 248 ARG ARG 1 . n A 1 249 THR 249 249 249 THR THR 1 . n A 1 250 ALA 250 250 250 ALA ALA 1 . n A 1 251 GLN 251 251 251 GLN GLN 1 . n A 1 252 VAL 252 252 252 VAL VAL 1 . n A 1 253 ARG 253 253 253 ARG ARG 1 . n A 1 254 TYR 254 254 254 TYR TYR 1 . n A 1 255 LEU 255 255 255 LEU LEU 1 . n A 1 256 LYS 256 256 256 LYS LYS 1 . n A 1 257 THR 257 257 257 THR THR 1 . n A 1 258 TYR 258 258 258 TYR TYR 1 . n A 1 259 GLN 259 259 259 GLN GLN 1 . n A 1 260 GLU 260 260 260 GLU GLU 1 . n A 1 261 GLU 261 261 261 GLU GLU 1 . n A 1 262 GLY 262 262 262 GLY GLY 1 . n A 1 263 GLU 263 263 263 GLU GLU 1 . n A 1 264 LYS 264 264 264 LYS LYS 1 . n A 1 265 VAL 265 265 265 VAL VAL 1 . n A 1 266 SER 266 266 266 SER SER 1 . n A 1 267 ALA 267 267 267 ALA ALA 1 . n A 1 268 TYR 268 268 268 TYR TYR 1 . n A 1 269 VAL 269 269 269 VAL VAL 1 . n A 1 270 LEU 270 270 270 LEU LEU 1 . n A 1 271 ARG 271 271 271 ARG ARG 1 . n A 1 272 LEU 272 272 272 LEU LEU 1 . n A 1 273 GLU 273 273 273 GLU GLU 1 . n A 1 274 THR 274 274 274 THR THR 1 . n A 1 275 LEU 275 275 275 LEU LEU 1 . n A 1 276 LEU 276 276 276 LEU LEU 1 . n A 1 277 ARG 277 277 277 ARG ARG 1 . n A 1 278 ARG 278 278 278 ARG ARG 1 . n A 1 279 ALA 279 279 279 ALA ALA 1 . n A 1 280 VAL 280 280 280 VAL VAL 1 . n A 1 281 GLU 281 281 281 GLU GLU 1 . n A 1 282 LYS 282 282 282 LYS LYS 1 . n A 1 283 ARG 283 283 283 ARG ARG 1 . n A 1 284 ALA 284 284 284 ALA ALA 1 . n A 1 285 ILE 285 285 285 ILE ILE 1 . n A 1 286 PRO 286 286 286 PRO PRO 1 . n A 1 287 ARG 287 287 287 ARG ARG 1 . n A 1 288 ARG 288 288 288 ARG ARG 1 . n A 1 289 ILE 289 289 289 ILE ILE 1 . n A 1 290 ALA 290 290 290 ALA ALA 1 . n A 1 291 ASP 291 291 291 ASP ASP 1 . n A 1 292 GLN 292 292 292 GLN GLN 1 . n A 1 293 VAL 293 293 293 VAL VAL 1 . n A 1 294 ARG 294 294 294 ARG ARG 1 . n A 1 295 LEU 295 295 295 LEU LEU 1 . n A 1 296 GLU 296 296 296 GLU GLU 1 . n A 1 297 GLN 297 297 297 GLN GLN 1 . n A 1 298 VAL 298 298 298 VAL VAL 1 . n A 1 299 MET 299 299 299 MET MET 1 . n A 1 300 ALA 300 300 300 ALA ALA 1 . n A 1 301 GLY 301 301 301 GLY GLY 1 . n A 1 302 ALA 302 302 302 ALA ALA 1 . n A 1 303 THR 303 303 303 THR THR 1 . n A 1 304 LEU 304 304 304 LEU LEU 1 . n A 1 305 ASN 305 305 305 ASN ASN 1 . n A 1 306 GLN 306 306 306 GLN GLN 1 . n A 1 307 MET 307 307 307 MET MET 1 . n A 1 308 LEU 308 308 308 LEU LEU 1 . n A 1 309 TRP 309 309 309 TRP TRP 1 . n A 1 310 CYS 310 310 310 CYS CYS 1 . n A 1 311 ARG 311 311 311 ARG ARG 1 . n A 1 312 LEU 312 312 312 LEU LEU 1 . n A 1 313 ARG 313 313 313 ARG ARG 1 . n A 1 314 GLU 314 314 314 GLU GLU 1 . n A 1 315 LEU 315 315 315 LEU LEU 1 . n A 1 316 LYS 316 316 316 LYS LYS 1 . n A 1 317 ASP 317 317 317 ASP ASP 1 . n A 1 318 GLN 318 318 318 GLN GLN 1 . n A 1 319 GLY 319 319 319 GLY GLY 1 . n A 1 320 PRO 320 320 320 PRO PRO 1 . n A 1 321 PRO 321 321 321 PRO PRO 1 . n A 1 322 PRO 322 322 322 PRO PRO 1 . n A 1 323 SER 323 323 323 SER SER 1 . n A 1 324 PHE 324 324 324 PHE PHE 1 . n A 1 325 LEU 325 325 325 LEU LEU 1 . n A 1 326 GLU 326 326 326 GLU GLU 1 . n A 1 327 LEU 327 327 327 LEU LEU 1 . n A 1 328 MET 328 328 328 MET MET 1 . n A 1 329 LYS 329 329 329 LYS LYS 1 . n A 1 330 VAL 330 330 330 VAL VAL 1 . n A 1 331 ILE 331 331 331 ILE ILE 1 . n A 1 332 ARG 332 332 332 ARG ARG 1 . n A 1 333 GLU 333 333 333 GLU GLU 1 . n A 1 334 GLU 334 334 334 GLU GLU 1 . n A 1 335 GLU 335 335 335 GLU GLU 1 . n A 1 336 GLU 336 336 336 GLU GLU 1 . n A 1 337 GLU 337 337 337 GLU GLU 1 . n A 1 338 GLU 338 338 338 GLU GLU 1 . n A 1 339 ALA 339 339 339 ALA ALA 1 . n A 1 340 SER 340 340 340 SER SER 1 . n A 1 341 PHE 341 341 ? ? ? 1 . n A 1 342 GLU 342 342 ? ? ? 1 . n A 1 343 ASN 343 343 ? ? ? 1 . n A 1 344 GLU 344 344 ? ? ? 1 . n A 1 345 SER 345 345 ? ? ? 1 . n A 1 346 ILE 346 346 ? ? ? 1 . n A 1 347 GLU 347 347 ? ? ? 1 . n A 1 348 GLU 348 348 ? ? ? 1 . n A 1 349 PRO 349 349 ? ? ? 1 . n A 1 350 GLU 350 350 ? ? ? 1 . n A 1 351 GLU 351 351 ? ? ? 1 . n A 1 352 ARG 352 352 ? ? ? 1 . n A 1 353 ASP 353 353 ? ? ? 1 . n A 1 354 GLY 354 354 ? ? ? 1 . n A 1 355 TYR 355 355 ? ? ? 1 . n A 1 356 GLY 356 356 ? ? ? 1 . n A 1 357 ARG 357 357 ? ? ? 1 . n A 1 358 TRP 358 358 ? ? ? 1 . n A 1 359 ASN 359 359 ? ? ? 1 . n A 1 360 HIS 360 360 ? ? ? 1 . n A 1 361 GLU 361 361 ? ? ? 1 . n A 1 362 GLY 362 362 ? ? ? 1 . n A 1 363 ASP 363 363 ? ? ? 1 . n A 1 364 ASP 364 364 ? ? ? 1 . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8UYO _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8UYO _struct.title 'Structure of a recombinant human PNMA2 capsid' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8UYO _struct_keywords.text 'capsid, endogenous retrovirus-like particle, paraneoplasm, antigen, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PNMA2_HUMAN _struct_ref.pdbx_db_accession Q9UL42 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MALALLEDWCRIMSVDEQKSLMVTGIPADFEEAEIQEVLQETLKSLGRYRLLGKIFRKQENANAVLLELLEDTDVSAIPS EVQGKGGVWKVIFKTPNQDTEFLERLNLFLEKEGQTVSGMFRALGQEGVSPATVPCISPELLAHLLGQAMAHAPQPLLPM RYRKLRVFSGSAVPAPEEESFEVWLEQATEIVKEWPVTEAEKKRWLAESLRGPALDLMHIVQADNPSISVEECLEAFKQV FGSLESRRTAQVRYLKTYQEEGEKVSAYVLRLETLLRRAVEKRAIPRRIADQVRLEQVMAGATLNQMLWCRLRELKDQGP PPSFLELMKVIREEEEEEASFENESIEEPEERDGYGRWNHEGDD ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8UYO _struct_ref_seq.pdbx_strand_id 1 _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 364 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UL42 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 364 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 364 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A 2 1 A 3 '(1-5)' A 4 '(1,2,6,10,23,24)' A 5 P A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.68819095 -0.50000000 -0.52573112 58.15556 0.42532542 -0.30901699 0.85065080 -167.20502 -0.58778525 -0.80901700 0.00000001 242.73820 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.36180339 -0.26286557 -0.89442719 311.14730 0.58778525 0.80901700 -0.00000001 -68.95028 0.72360680 -0.52573111 0.44721360 61.14837 3 'point symmetry operation' ? ? -0.67082041 0.16245983 -0.72360679 387.15334 0.68819095 0.50000000 -0.52573112 58.15556 0.27639321 -0.85065082 -0.44721358 349.89236 4 'point symmetry operation' ? ? -0.67082040 0.68819095 0.27639321 122.98036 0.16245983 0.50000000 -0.85065081 205.66158 -0.72360679 -0.52573114 -0.44721359 467.19760 5 'point symmetry operation' ? ? 0.36180340 0.58778526 0.72360680 -116.29357 -0.26286557 0.80901699 -0.52573110 169.71946 -0.89442719 -0.00000002 0.44721360 250.95222 6 'point symmetry operation' ? ? -0.30901700 0.95105652 -0.00000001 62.18883 0.95105651 0.30901700 -0.00000002 -45.18282 -0.00000002 -0.00000002 -1.00000000 345.61455 7 'point symmetry operation' ? ? 0.44721359 0.85065082 0.27639319 -99.53659 0.52573109 0.00000000 -0.85065081 229.42903 -0.72360682 0.52573109 -0.44721359 284.46617 8 'point symmetry operation' ? ? 0.86180339 0.42532542 -0.27639320 -2.13891 -0.42532542 0.30901699 -0.85065080 340.99294 -0.27639321 0.85065080 0.44721361 -4.27783 9 'point symmetry operation' ? ? 0.36180340 0.26286556 -0.89442719 219.78158 -0.58778525 0.80901699 0.00000000 135.33136 0.72360680 0.52573111 0.44721360 -121.58306 10 'point symmetry operation' ? ? -0.36180340 0.58778525 -0.72360680 259.53832 0.26286556 0.80901700 0.52573110 -103.33838 0.89442719 -0.00000001 -0.44721360 94.66232 11 'point symmetry operation' ? ? -0.63819657 -0.26286556 0.72360682 205.31161 -0.26286556 -0.80901700 -0.52573110 450.91422 0.72360682 -0.52573110 0.44721357 61.14837 12 'point symmetry operation' ? ? 0.13819663 -0.42532541 0.89442718 69.11049 -0.95105651 -0.30901700 0.00000002 392.75866 0.27639320 -0.85065080 -0.44721362 349.89237 13 'point symmetry operation' ? ? 0.44721359 -0.85065082 0.27639319 196.12907 -0.52573109 0.00000000 0.85065081 118.14680 -0.72360681 -0.52573110 -0.44721359 467.19760 14 'point symmetry operation' ? ? -0.13819662 -0.95105652 -0.27639320 410.83198 0.42532542 -0.30901699 0.85065080 6.58290 -0.89442718 0.00000002 0.44721361 250.95222 15 'point symmetry operation' ? ? -0.80901700 -0.58778526 0.00000003 416.50710 0.58778525 -0.80901699 0.00000000 212.24447 0.00000003 0.00000002 1.00000000 0.00000 16 'point symmetry operation' ? ? -0.05278642 -0.68819096 -0.72360680 427.58896 -0.68819095 -0.50000000 0.52573112 289.42027 -0.72360680 0.52573112 -0.44721357 284.46616 17 'point symmetry operation' ? ? -0.94721360 -0.16245984 -0.27639319 414.36819 -0.16245983 -0.50000000 0.85065081 141.91426 -0.27639318 0.85065082 0.44721360 -4.27783 18 'point symmetry operation' ? ? -0.63819658 0.26286557 0.72360681 113.94589 0.26286557 -0.80901699 0.52573111 177.85637 0.72360682 0.52573112 0.44721357 -121.58306 19 'point symmetry operation' ? ? 0.44721363 0.00000001 0.89442718 -58.50453 0.00000000 -1.00000000 0.00000000 347.57583 0.89442718 0.00000000 -0.44721363 94.66232 20 'point symmetry operation' ? ? 0.80901700 -0.58778525 -0.00000003 135.33754 -0.58778525 -0.80901700 0.00000000 416.52612 -0.00000003 0.00000001 -1.00000000 345.61454 21 'point symmetry operation' ? ? -0.36180340 -0.58778526 -0.72360679 463.83826 -0.26286557 0.80901699 -0.52573111 169.71946 0.89442719 0.00000001 -0.44721359 94.66231 22 'point symmetry operation' ? ? -1.00000000 -0.00000001 0.00000000 347.54470 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 345.61454 23 'point symmetry operation' ? ? -0.36180340 0.26286556 0.89442719 36.39740 0.58778525 0.80901700 0.00000000 -68.95028 -0.72360680 0.52573110 -0.44721360 284.46617 24 'point symmetry operation' ? ? 0.67082040 -0.16245983 0.72360680 -39.60865 0.68819095 0.50000000 -0.52573112 58.15556 -0.27639321 0.85065082 0.44721359 -4.27782 25 'point symmetry operation' ? ? 0.67082040 -0.68819096 -0.27639320 224.56434 0.16245983 0.50000000 -0.85065081 205.66157 0.72360679 0.52573113 0.44721359 -121.58306 26 'point symmetry operation' ? ? -0.44721359 -0.52573110 0.72360681 217.80690 0.85065081 0.00000000 0.52573110 -64.88183 -0.27639319 0.85065082 0.44721358 -4.27783 27 'point symmetry operation' ? ? 0.05278643 -0.68819095 0.72360681 159.15428 0.68819095 -0.50000000 -0.52573112 231.94348 0.72360680 0.52573114 0.44721357 -121.58306 28 'point symmetry operation' ? ? 0.13819662 -0.95105652 0.27639320 267.27697 -0.42532542 -0.30901700 -0.85065080 448.39977 0.89442718 0.00000002 -0.44721361 94.66232 29 'point symmetry operation' ? ? -0.30901699 -0.95105652 0.00000000 392.75309 -0.95105651 0.30901699 0.00000001 285.35182 0.00000000 0.00000001 -1.00000000 345.61454 30 'point symmetry operation' ? ? -0.67082040 -0.68819096 0.27639320 362.17890 -0.16245983 0.50000000 0.85065080 -31.87366 -0.72360679 0.52573112 -0.44721359 284.46616 31 'point symmetry operation' ? ? -0.13819662 0.95105652 -0.27639319 80.26772 -0.42532542 -0.30901700 -0.85065080 448.39977 -0.89442718 -0.00000002 0.44721362 250.95222 32 'point symmetry operation' ? ? 0.30901700 0.95105652 0.00000000 -45.20839 -0.95105651 0.30901699 0.00000002 285.35182 0.00000002 -0.00000002 1.00000000 0.00000 33 'point symmetry operation' ? ? 0.67082040 0.68819096 -0.27639321 -14.63420 -0.16245983 0.50000000 0.85065080 -31.87366 0.72360680 -0.52573112 0.44721359 61.14838 34 'point symmetry operation' ? ? 0.44721358 0.52573110 -0.72360681 129.73780 0.85065082 0.00000000 0.52573109 -64.88183 0.27639318 -0.85065082 -0.44721359 349.89237 35 'point symmetry operation' ? ? -0.05278643 0.68819096 -0.72360680 188.39041 0.68819095 -0.50000000 -0.52573112 231.94348 -0.72360681 -0.52573113 -0.44721357 467.19760 36 'point symmetry operation' ? ? 0.94721361 0.16245984 0.27639318 -66.82349 -0.16245983 -0.50000000 0.85065081 141.91426 0.27639318 -0.85065082 -0.44721361 349.89237 37 'point symmetry operation' ? ? 0.63819658 -0.26286556 -0.72360682 233.59881 0.26286557 -0.80901699 0.52573110 177.85637 -0.72360682 -0.52573111 -0.44721357 467.19760 38 'point symmetry operation' ? ? -0.44721363 0.00000000 -0.89442718 406.04923 0.00000000 -1.00000000 0.00000000 347.57583 -0.89442718 0.00000000 0.44721363 250.95221 39 'point symmetry operation' ? ? -0.80901699 0.58778526 0.00000003 212.20715 -0.58778525 -0.80901700 0.00000001 416.52612 0.00000004 0.00000000 1.00000000 0.00000 40 'point symmetry operation' ? ? 0.05278643 0.68819096 0.72360680 -80.04426 -0.68819094 -0.50000000 0.52573112 289.42027 0.72360681 -0.52573112 0.44721357 61.14838 41 'point symmetry operation' ? ? -0.36180339 -0.26286557 0.89442719 127.76311 -0.58778525 0.80901699 0.00000000 135.33136 -0.72360680 -0.52573112 -0.44721360 467.19760 42 'point symmetry operation' ? ? 0.36180340 -0.58778525 0.72360680 88.00638 0.26286556 0.80901700 0.52573111 -103.33838 -0.89442719 0.00000000 0.44721359 250.95222 43 'point symmetry operation' ? ? 0.30901699 -0.95105652 0.00000001 285.35587 0.95105651 0.30901700 -0.00000001 -45.18282 0.00000000 0.00000002 1.00000000 0.00000 44 'point symmetry operation' ? ? -0.44721359 -0.85065082 -0.27639318 447.08129 0.52573109 0.00000000 -0.85065081 229.42903 0.72360681 -0.52573109 0.44721359 61.14837 45 'point symmetry operation' ? ? -0.86180339 -0.42532542 0.27639321 349.68361 -0.42532542 0.30901699 -0.85065080 340.99294 0.27639321 -0.85065081 -0.44721360 349.89236 46 'point symmetry operation' ? ? -0.13819663 -0.42532542 -0.89442718 426.26704 0.95105651 -0.30901699 -0.00000001 62.22401 -0.27639319 -0.85065080 0.44721362 291.38783 47 'point symmetry operation' ? ? -0.94721361 0.16245983 -0.27639318 357.90107 0.16245983 -0.50000000 -0.85065080 379.44949 -0.27639318 -0.85065081 0.44721361 291.38783 48 'point symmetry operation' ? ? -0.44721358 0.52573110 0.72360681 35.07547 -0.85065082 0.00000000 -0.52573109 412.45766 -0.27639318 -0.85065082 0.44721359 291.38784 49 'point symmetry operation' ? ? 0.67082041 0.16245984 0.72360679 -96.07576 -0.68819095 0.50000000 0.52573112 115.63236 -0.27639320 -0.85065082 0.44721359 291.38784 50 'point symmetry operation' ? ? 0.86180339 -0.42532542 -0.27639321 145.69392 0.42532542 0.30901700 0.85065080 -100.82394 -0.27639321 -0.85065081 0.44721360 291.38784 51 'point symmetry operation' ? ? 0.94721360 -0.16245983 0.27639319 -10.35638 0.16245983 -0.50000000 -0.85065080 379.44949 0.27639317 0.85065082 -0.44721360 54.22671 52 'point symmetry operation' ? ? 0.44721359 -0.52573110 -0.72360681 312.46922 -0.85065081 0.00000000 -0.52573110 412.45766 0.27639319 0.85065082 -0.44721359 54.22670 53 'point symmetry operation' ? ? -0.67082040 -0.16245985 -0.72360680 443.62046 -0.68819095 0.50000000 0.52573112 115.63236 0.27639321 0.85065081 -0.44721359 54.22670 54 'point symmetry operation' ? ? -0.86180339 0.42532541 0.27639320 201.85078 0.42532542 0.30901700 0.85065080 -100.82394 0.27639321 0.85065080 -0.44721361 54.22670 55 'point symmetry operation' ? ? 0.13819662 0.42532542 0.89442718 -78.72234 0.95105651 -0.30901699 -0.00000001 62.22401 0.27639319 0.85065081 -0.44721362 54.22671 56 'point symmetry operation' ? ? -0.44721359 0.85065082 -0.27639319 151.41562 -0.52573109 0.00000000 0.85065081 118.14680 0.72360682 0.52573110 0.44721359 -121.58306 57 'point symmetry operation' ? ? 0.13819662 0.95105652 0.27639319 -63.28729 0.42532542 -0.30901699 0.85065080 6.58290 0.89442718 -0.00000001 -0.44721362 94.66232 58 'point symmetry operation' ? ? 0.80901699 0.58778526 -0.00000003 -68.96241 0.58778525 -0.80901699 0.00000000 212.24447 -0.00000004 -0.00000001 -1.00000000 345.61455 59 'point symmetry operation' ? ? 0.63819658 0.26286557 -0.72360681 142.23309 -0.26286556 -0.80901700 -0.52573111 450.91422 -0.72360682 0.52573111 -0.44721357 284.46617 60 'point symmetry operation' ? ? -0.13819662 0.42532542 -0.89442718 278.43420 -0.95105651 -0.30901700 0.00000001 392.75866 -0.27639319 0.85065081 0.44721362 -4.27783 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 180 ? GLU A 194 ? SER 1 180 GLU 1 194 1 ? 15 HELX_P HELX_P2 AA2 THR A 198 ? LEU A 210 ? THR 1 198 LEU 1 210 1 ? 13 HELX_P HELX_P3 AA3 PRO A 213 ? ASP A 224 ? PRO 1 213 ASP 1 224 1 ? 12 HELX_P HELX_P4 AA4 SER A 229 ? GLY A 242 ? SER 1 229 GLY 1 242 1 ? 14 HELX_P HELX_P5 AA5 SER A 246 ? LYS A 256 ? SER 1 246 LYS 1 256 1 ? 11 HELX_P HELX_P6 AA6 LYS A 264 ? LYS A 282 ? LYS 1 264 LYS 1 282 1 ? 19 HELX_P HELX_P7 AA7 PRO A 286 ? ARG A 288 ? PRO 1 286 ARG 1 288 5 ? 3 HELX_P HELX_P8 AA8 ILE A 289 ? ALA A 302 ? ILE 1 289 ALA 1 302 1 ? 14 HELX_P HELX_P9 AA9 ASN A 305 ? GLN A 318 ? ASN 1 305 GLN 1 318 1 ? 14 HELX_P HELX_P10 AB1 SER A 323 ? GLU A 336 ? SER 1 323 GLU 1 336 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG1 _pdbx_validate_rmsd_angle.auth_asym_id_1 1 _pdbx_validate_rmsd_angle.auth_comp_id_1 VAL _pdbx_validate_rmsd_angle.auth_seq_id_1 197 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 1 _pdbx_validate_rmsd_angle.auth_comp_id_2 VAL _pdbx_validate_rmsd_angle.auth_seq_id_2 197 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG2 _pdbx_validate_rmsd_angle.auth_asym_id_3 1 _pdbx_validate_rmsd_angle.auth_comp_id_3 VAL _pdbx_validate_rmsd_angle.auth_seq_id_3 197 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.60 _pdbx_validate_rmsd_angle.angle_target_value 110.90 _pdbx_validate_rmsd_angle.angle_deviation -11.30 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET 1 160 ? ? -78.37 -167.68 2 1 THR 1 303 ? ? -102.29 72.62 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id 1 _pdbx_validate_planes.auth_seq_id 247 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.084 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_point_symmetry.entry_id 8UYO _pdbx_point_symmetry.Schoenflies_symbol I # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8UYO _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name AlphaFold _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code AF-Q9UL42-F1 _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 8UYO _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 88320 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'phosphate buffered saline, pH 7.4' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'PNMA2 icosahedral capsid' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8UYO _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2600 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8UYO _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8UYO _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8UYO _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 1 MET 1 ? A MET 1 2 1 Y 1 1 ALA 2 ? A ALA 2 3 1 Y 1 1 LEU 3 ? A LEU 3 4 1 Y 1 1 ALA 4 ? A ALA 4 5 1 Y 1 1 LEU 5 ? A LEU 5 6 1 Y 1 1 LEU 6 ? A LEU 6 7 1 Y 1 1 GLU 7 ? A GLU 7 8 1 Y 1 1 ASP 8 ? A ASP 8 9 1 Y 1 1 TRP 9 ? A TRP 9 10 1 Y 1 1 CYS 10 ? A CYS 10 11 1 Y 1 1 ARG 11 ? A ARG 11 12 1 Y 1 1 ILE 12 ? A ILE 12 13 1 Y 1 1 MET 13 ? A MET 13 14 1 Y 1 1 SER 14 ? A SER 14 15 1 Y 1 1 VAL 15 ? A VAL 15 16 1 Y 1 1 ASP 16 ? A ASP 16 17 1 Y 1 1 GLU 17 ? A GLU 17 18 1 Y 1 1 GLN 18 ? A GLN 18 19 1 Y 1 1 LYS 19 ? A LYS 19 20 1 Y 1 1 SER 20 ? A SER 20 21 1 Y 1 1 LEU 21 ? A LEU 21 22 1 Y 1 1 MET 22 ? A MET 22 23 1 Y 1 1 VAL 23 ? A VAL 23 24 1 Y 1 1 THR 24 ? A THR 24 25 1 Y 1 1 GLY 25 ? A GLY 25 26 1 Y 1 1 ILE 26 ? A ILE 26 27 1 Y 1 1 PRO 27 ? A PRO 27 28 1 Y 1 1 ALA 28 ? A ALA 28 29 1 Y 1 1 ASP 29 ? A ASP 29 30 1 Y 1 1 PHE 30 ? A PHE 30 31 1 Y 1 1 GLU 31 ? A GLU 31 32 1 Y 1 1 GLU 32 ? A GLU 32 33 1 Y 1 1 ALA 33 ? A ALA 33 34 1 Y 1 1 GLU 34 ? A GLU 34 35 1 Y 1 1 ILE 35 ? A ILE 35 36 1 Y 1 1 GLN 36 ? A GLN 36 37 1 Y 1 1 GLU 37 ? A GLU 37 38 1 Y 1 1 VAL 38 ? A VAL 38 39 1 Y 1 1 LEU 39 ? A LEU 39 40 1 Y 1 1 GLN 40 ? A GLN 40 41 1 Y 1 1 GLU 41 ? A GLU 41 42 1 Y 1 1 THR 42 ? A THR 42 43 1 Y 1 1 LEU 43 ? A LEU 43 44 1 Y 1 1 LYS 44 ? A LYS 44 45 1 Y 1 1 SER 45 ? A SER 45 46 1 Y 1 1 LEU 46 ? A LEU 46 47 1 Y 1 1 GLY 47 ? A GLY 47 48 1 Y 1 1 ARG 48 ? A ARG 48 49 1 Y 1 1 TYR 49 ? A TYR 49 50 1 Y 1 1 ARG 50 ? A ARG 50 51 1 Y 1 1 LEU 51 ? A LEU 51 52 1 Y 1 1 LEU 52 ? A LEU 52 53 1 Y 1 1 GLY 53 ? A GLY 53 54 1 Y 1 1 LYS 54 ? A LYS 54 55 1 Y 1 1 ILE 55 ? A ILE 55 56 1 Y 1 1 PHE 56 ? A PHE 56 57 1 Y 1 1 ARG 57 ? A ARG 57 58 1 Y 1 1 LYS 58 ? A LYS 58 59 1 Y 1 1 GLN 59 ? A GLN 59 60 1 Y 1 1 GLU 60 ? A GLU 60 61 1 Y 1 1 ASN 61 ? A ASN 61 62 1 Y 1 1 ALA 62 ? A ALA 62 63 1 Y 1 1 ASN 63 ? A ASN 63 64 1 Y 1 1 ALA 64 ? A ALA 64 65 1 Y 1 1 VAL 65 ? A VAL 65 66 1 Y 1 1 LEU 66 ? A LEU 66 67 1 Y 1 1 LEU 67 ? A LEU 67 68 1 Y 1 1 GLU 68 ? A GLU 68 69 1 Y 1 1 LEU 69 ? A LEU 69 70 1 Y 1 1 LEU 70 ? A LEU 70 71 1 Y 1 1 GLU 71 ? A GLU 71 72 1 Y 1 1 ASP 72 ? A ASP 72 73 1 Y 1 1 THR 73 ? A THR 73 74 1 Y 1 1 ASP 74 ? A ASP 74 75 1 Y 1 1 VAL 75 ? A VAL 75 76 1 Y 1 1 SER 76 ? A SER 76 77 1 Y 1 1 ALA 77 ? A ALA 77 78 1 Y 1 1 ILE 78 ? A ILE 78 79 1 Y 1 1 PRO 79 ? A PRO 79 80 1 Y 1 1 SER 80 ? A SER 80 81 1 Y 1 1 GLU 81 ? A GLU 81 82 1 Y 1 1 VAL 82 ? A VAL 82 83 1 Y 1 1 GLN 83 ? A GLN 83 84 1 Y 1 1 GLY 84 ? A GLY 84 85 1 Y 1 1 LYS 85 ? A LYS 85 86 1 Y 1 1 GLY 86 ? A GLY 86 87 1 Y 1 1 GLY 87 ? A GLY 87 88 1 Y 1 1 VAL 88 ? A VAL 88 89 1 Y 1 1 TRP 89 ? A TRP 89 90 1 Y 1 1 LYS 90 ? A LYS 90 91 1 Y 1 1 VAL 91 ? A VAL 91 92 1 Y 1 1 ILE 92 ? A ILE 92 93 1 Y 1 1 PHE 93 ? A PHE 93 94 1 Y 1 1 LYS 94 ? A LYS 94 95 1 Y 1 1 THR 95 ? A THR 95 96 1 Y 1 1 PRO 96 ? A PRO 96 97 1 Y 1 1 ASN 97 ? A ASN 97 98 1 Y 1 1 GLN 98 ? A GLN 98 99 1 Y 1 1 ASP 99 ? A ASP 99 100 1 Y 1 1 THR 100 ? A THR 100 101 1 Y 1 1 GLU 101 ? A GLU 101 102 1 Y 1 1 PHE 102 ? A PHE 102 103 1 Y 1 1 LEU 103 ? A LEU 103 104 1 Y 1 1 GLU 104 ? A GLU 104 105 1 Y 1 1 ARG 105 ? A ARG 105 106 1 Y 1 1 LEU 106 ? A LEU 106 107 1 Y 1 1 ASN 107 ? A ASN 107 108 1 Y 1 1 LEU 108 ? A LEU 108 109 1 Y 1 1 PHE 109 ? A PHE 109 110 1 Y 1 1 LEU 110 ? A LEU 110 111 1 Y 1 1 GLU 111 ? A GLU 111 112 1 Y 1 1 LYS 112 ? A LYS 112 113 1 Y 1 1 GLU 113 ? A GLU 113 114 1 Y 1 1 GLY 114 ? A GLY 114 115 1 Y 1 1 GLN 115 ? A GLN 115 116 1 Y 1 1 THR 116 ? A THR 116 117 1 Y 1 1 VAL 117 ? A VAL 117 118 1 Y 1 1 SER 118 ? A SER 118 119 1 Y 1 1 GLY 119 ? A GLY 119 120 1 Y 1 1 MET 120 ? A MET 120 121 1 Y 1 1 PHE 121 ? A PHE 121 122 1 Y 1 1 ARG 122 ? A ARG 122 123 1 Y 1 1 ALA 123 ? A ALA 123 124 1 Y 1 1 LEU 124 ? A LEU 124 125 1 Y 1 1 GLY 125 ? A GLY 125 126 1 Y 1 1 GLN 126 ? A GLN 126 127 1 Y 1 1 GLU 127 ? A GLU 127 128 1 Y 1 1 GLY 128 ? A GLY 128 129 1 Y 1 1 VAL 129 ? A VAL 129 130 1 Y 1 1 SER 130 ? A SER 130 131 1 Y 1 1 PRO 131 ? A PRO 131 132 1 Y 1 1 ALA 132 ? A ALA 132 133 1 Y 1 1 THR 133 ? A THR 133 134 1 Y 1 1 VAL 134 ? A VAL 134 135 1 Y 1 1 PRO 135 ? A PRO 135 136 1 Y 1 1 CYS 136 ? A CYS 136 137 1 Y 1 1 ILE 137 ? A ILE 137 138 1 Y 1 1 SER 138 ? A SER 138 139 1 Y 1 1 PRO 139 ? A PRO 139 140 1 Y 1 1 GLU 140 ? A GLU 140 141 1 Y 1 1 LEU 141 ? A LEU 141 142 1 Y 1 1 LEU 142 ? A LEU 142 143 1 Y 1 1 ALA 143 ? A ALA 143 144 1 Y 1 1 HIS 144 ? A HIS 144 145 1 Y 1 1 LEU 145 ? A LEU 145 146 1 Y 1 1 LEU 146 ? A LEU 146 147 1 Y 1 1 GLY 147 ? A GLY 147 148 1 Y 1 1 GLN 148 ? A GLN 148 149 1 Y 1 1 ALA 149 ? A ALA 149 150 1 Y 1 1 MET 150 ? A MET 150 151 1 Y 1 1 ALA 151 ? A ALA 151 152 1 Y 1 1 HIS 152 ? A HIS 152 153 1 Y 1 1 ALA 153 ? A ALA 153 154 1 Y 1 1 PRO 154 ? A PRO 154 155 1 Y 1 1 GLN 155 ? A GLN 155 156 1 Y 1 1 PRO 156 ? A PRO 156 157 1 Y 1 1 LEU 157 ? A LEU 157 158 1 Y 1 1 PHE 341 ? A PHE 341 159 1 Y 1 1 GLU 342 ? A GLU 342 160 1 Y 1 1 ASN 343 ? A ASN 343 161 1 Y 1 1 GLU 344 ? A GLU 344 162 1 Y 1 1 SER 345 ? A SER 345 163 1 Y 1 1 ILE 346 ? A ILE 346 164 1 Y 1 1 GLU 347 ? A GLU 347 165 1 Y 1 1 GLU 348 ? A GLU 348 166 1 Y 1 1 PRO 349 ? A PRO 349 167 1 Y 1 1 GLU 350 ? A GLU 350 168 1 Y 1 1 GLU 351 ? A GLU 351 169 1 Y 1 1 ARG 352 ? A ARG 352 170 1 Y 1 1 ASP 353 ? A ASP 353 171 1 Y 1 1 GLY 354 ? A GLY 354 172 1 Y 1 1 TYR 355 ? A TYR 355 173 1 Y 1 1 GLY 356 ? A GLY 356 174 1 Y 1 1 ARG 357 ? A ARG 357 175 1 Y 1 1 TRP 358 ? A TRP 358 176 1 Y 1 1 ASN 359 ? A ASN 359 177 1 Y 1 1 HIS 360 ? A HIS 360 178 1 Y 1 1 GLU 361 ? A GLU 361 179 1 Y 1 1 GLY 362 ? A GLY 362 180 1 Y 1 1 ASP 363 ? A ASP 363 181 1 Y 1 1 ASP 364 ? A ASP 364 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 2.49 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 0.6 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 30.68 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 17600 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 722571 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? Topaz ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot ? 'MODEL FITTING' ? 8 ? 1 ? ISOLDE ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 4.1 CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 4.1 'MODEL REFINEMENT' ? 14 ? 1 ? PHENIX ? # _em_specimen.concentration 1.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' ? 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code AF-Q9UL42-F1 # _atom_sites.entry_id 8UYO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_