HEADER OXIDOREDUCTASE 14-NOV-23 8UYR TITLE MANGANESE-SUBSTITUTED DITZ FROM RHODOCOCCUS RHODOCHROUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DITZ; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS RHODOCHROUS; SOURCE 3 ORGANISM_TAXID: 1829; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MONOOXYGENASE, DITERPENOID, DIIRON, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.LIU,S.CHEN,J.RITTLE REVDAT 1 27-NOV-24 8UYR 0 JRNL AUTH S.CHEN,C.LIU,J.RITTLE JRNL TITL A WIDESPREAD, DIIRON-DEPENDENT DITERPENOID HYDROXYLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 68822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4400 - 4.4900 0.98 4842 151 0.1461 0.1723 REMARK 3 2 4.4900 - 3.5600 0.98 4755 148 0.1280 0.1561 REMARK 3 3 3.5600 - 3.1100 0.99 4795 141 0.1525 0.1793 REMARK 3 4 3.1100 - 2.8300 0.99 4774 148 0.1611 0.1650 REMARK 3 5 2.8300 - 2.6200 0.98 4716 148 0.1679 0.1922 REMARK 3 6 2.6200 - 2.4700 0.99 4727 145 0.1664 0.2078 REMARK 3 7 2.4700 - 2.3500 0.99 4725 144 0.1652 0.2259 REMARK 3 8 2.3500 - 2.2400 0.97 4695 140 0.1631 0.1997 REMARK 3 9 2.2400 - 2.1600 0.99 4739 139 0.1716 0.2185 REMARK 3 10 2.1600 - 2.0800 0.99 4730 136 0.1777 0.2099 REMARK 3 11 2.0800 - 2.0200 0.98 4744 147 0.1814 0.2354 REMARK 3 12 2.0200 - 1.9600 0.95 4593 130 0.2004 0.2400 REMARK 3 13 1.9600 - 1.9100 0.81 3864 121 0.2120 0.2651 REMARK 3 14 1.9100 - 1.8600 0.68 3259 113 0.2314 0.2519 REMARK 3 15 1.8600 - 1.8200 0.59 2831 82 0.2480 0.2837 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.175 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.956 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6909 REMARK 3 ANGLE : 0.983 9401 REMARK 3 CHIRALITY : 0.061 1002 REMARK 3 PLANARITY : 0.007 1225 REMARK 3 DIHEDRAL : 15.011 2521 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8UYR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000279185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68822 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 39.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M MGCL2, 0.08 M TRIS PH 8.5, REMARK 280 16.8% PEG 4000, 20% V/V GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.87200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.34650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.87200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.34650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 753 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 770 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 423 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 361 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 381 CE3 TRP A 381 CZ3 -0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 65 CA - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 VAL A 65 O - C - N ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 85.23 -175.29 REMARK 500 ALA A 63 49.27 -146.45 REMARK 500 SER A 66 -7.61 71.43 REMARK 500 THR A 109 -71.28 -102.94 REMARK 500 GLU A 318 81.69 -166.77 REMARK 500 PHE A 372 -31.67 -155.00 REMARK 500 ASN B 43 89.38 -156.91 REMARK 500 ALA B 63 48.82 -145.56 REMARK 500 SER B 66 -8.67 76.53 REMARK 500 THR B 109 -67.55 -101.47 REMARK 500 GLU B 269 18.89 59.47 REMARK 500 ILE B 316 -61.71 -91.83 REMARK 500 GLU B 318 80.84 -167.37 REMARK 500 PHE B 372 -34.15 -155.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 327 10.75 REMARK 500 ARG B 327 10.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 953 DISTANCE = 6.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD1 REMARK 620 2 ASP A 12 OD2 56.7 REMARK 620 3 HIS A 14 NE2 94.5 150.8 REMARK 620 4 HIS A 217 NE2 93.3 94.9 91.3 REMARK 620 5 GLU A 269 OE1 151.8 95.2 113.7 85.7 REMARK 620 6 ASP A 338 OD1 99.1 92.8 86.6 167.6 83.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 269 OE1 REMARK 620 2 GLU A 269 OE2 56.0 REMARK 620 3 ASP A 338 OD2 84.8 87.8 REMARK 620 4 HIS A 341 ND1 116.3 171.0 96.3 REMARK 620 5 HOH A 624 O 149.2 93.2 95.4 94.4 REMARK 620 6 HOH A 811 O 81.6 84.6 166.4 89.8 96.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 506 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 651 O REMARK 620 2 HOH A 704 O 91.4 REMARK 620 3 HOH A 755 O 79.1 89.1 REMARK 620 4 HOH A 809 O 92.7 174.1 95.9 REMARK 620 5 HOH A 899 O 90.2 85.6 167.9 90.2 REMARK 620 6 HOH A 942 O 174.5 84.0 103.8 91.7 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 505 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 12 OD1 REMARK 620 2 ASP B 12 OD2 57.0 REMARK 620 3 HIS B 14 NE2 93.0 149.3 REMARK 620 4 HIS B 217 NE2 96.0 96.9 92.0 REMARK 620 5 GLU B 269 OE1 152.8 95.8 114.2 85.7 REMARK 620 6 ASP B 338 OD1 98.3 91.7 86.3 165.7 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 506 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 269 OE1 REMARK 620 2 GLU B 269 OE2 57.9 REMARK 620 3 ASP B 338 OD2 82.8 88.8 REMARK 620 4 HIS B 341 ND1 118.8 173.9 95.9 REMARK 620 5 HOH B 607 O 149.1 91.2 96.9 92.0 REMARK 620 6 HOH B 804 O 86.8 89.0 168.9 85.7 94.1 REMARK 620 N 1 2 3 4 5 DBREF 8UYR A 1 423 PDB 8UYR 8UYR 1 423 DBREF 8UYR B 1 423 PDB 8UYR 8UYR 1 423 SEQRES 1 A 423 MET LYS THR GLU ASP MET VAL MET ILE SER ILE ASP ASP SEQRES 2 A 423 HIS VAL VAL GLU PRO ALA ASP ILE PHE GLU LYS HIS PHE SEQRES 3 A 423 PRO LYS SER LEU MET ASP GLN ALA PRO LYS LEU THR ALA SEQRES 4 A 423 HIS PRO ARG ASN PRO ARG VAL GLN ALA TRP GLN PHE GLN SEQRES 5 A 423 GLY THR VAL VAL GLY SER SER GLY LEU ASN ALA VAL VAL SEQRES 6 A 423 SER TRP PRO LYS HIS GLU TRP GLY MET ASP PRO THR GLY SEQRES 7 A 423 TYR ALA GLU MET ARG PRO ALA VAL TYR ASP MET ASP MET SEQRES 8 A 423 ARG VAL ARG ASP MET ASP ALA ASN GLY THR LEU ALA ALA SEQRES 9 A 423 THR LEU PHE ALA THR PHE PRO GLY PHE ALA GLY THR HIS SEQRES 10 A 423 LEU ALA SER LEU PRO ASP LYS LYS LEU SER LEU ALA ALA SEQRES 11 A 423 CYS ARG ALA PHE ASN ASP TRP VAL VAL GLY GLU VAL PRO SEQRES 12 A 423 ASP ALA HIS PRO GLY ARG PHE ILE PRO ILE GLY ILE ILE SEQRES 13 A 423 PRO PHE PHE ASP ALA ASP GLU SER VAL ALA GLU VAL HIS SEQRES 14 A 423 ARG ILE ALA ALA MET GLY CYS ARG SER ILE SER ILE PRO SEQRES 15 A 423 GLU THR PRO TYR GLY VAL GLY GLU GLY PHE PRO ASP PHE SEQRES 16 A 423 LYS SER GLY TYR TRP ASP PRO ILE PHE LYS ALA CYS VAL SEQRES 17 A 423 GLU HIS ASN ILE VAL LEU SER LEU HIS ILE GLY GLY GLY SEQRES 18 A 423 ILE ASN LEU VAL LYS ARG PRO GLU GLY PHE ASP ILE ASP SEQRES 19 A 423 ASN MET LEU MET LEU THR PRO LEU ILE SER THR ILE ALA SEQRES 20 A 423 ALA THR ASP MET MET LEU SER GLY ALA PHE LYS LYS PHE SEQRES 21 A 423 PRO ASP LEU LYS VAL ALA MET SER GLU GLY GLY VAL GLY SEQRES 22 A 423 TRP VAL ALA PRO TRP LEU ASP ARG LEU ASP ARG HIS ILE SEQRES 23 A 423 VAL ASN GLN SER TRP THR GLY THR SER PHE LEU PRO LYS SEQRES 24 A 423 GLY MET THR PRO THR ASP VAL TRP ARG LYS ASN PHE LEU SEQRES 25 A 423 ALA CYS TYR ILE THR GLU PRO SER GLY LEU ASN ASN ARG SEQRES 26 A 423 HIS ARG LEU GLY VAL ASP THR ILE ALA TRP GLU CYS ASP SEQRES 27 A 423 TYR PRO HIS SER ASP SER THR TRP PRO ARG SER PRO GLU SEQRES 28 A 423 THR LEU LYS SER GLU LEU ASP ALA ALA ARG CYS THR ASP SEQRES 29 A 423 GLU GLU VAL ASP LYS ILE THR PHE ALA ASN ALA ALA LYS SEQRES 30 A 423 PHE PHE ASP TRP ASP PRO PHE GLU HIS ILE PRO ARG GLU SEQRES 31 A 423 GLU ALA THR VAL GLY ALA LEU ARG ALA ARG ALA THR ASP SEQRES 32 A 423 VAL ASP ILE SER GLU THR SER LYS GLU GLU TYR ARG ARG SEQRES 33 A 423 ARG TYR GLU LEU THR HIS SER SEQRES 1 B 423 MET LYS THR GLU ASP MET VAL MET ILE SER ILE ASP ASP SEQRES 2 B 423 HIS VAL VAL GLU PRO ALA ASP ILE PHE GLU LYS HIS PHE SEQRES 3 B 423 PRO LYS SER LEU MET ASP GLN ALA PRO LYS LEU THR ALA SEQRES 4 B 423 HIS PRO ARG ASN PRO ARG VAL GLN ALA TRP GLN PHE GLN SEQRES 5 B 423 GLY THR VAL VAL GLY SER SER GLY LEU ASN ALA VAL VAL SEQRES 6 B 423 SER TRP PRO LYS HIS GLU TRP GLY MET ASP PRO THR GLY SEQRES 7 B 423 TYR ALA GLU MET ARG PRO ALA VAL TYR ASP MET ASP MET SEQRES 8 B 423 ARG VAL ARG ASP MET ASP ALA ASN GLY THR LEU ALA ALA SEQRES 9 B 423 THR LEU PHE ALA THR PHE PRO GLY PHE ALA GLY THR HIS SEQRES 10 B 423 LEU ALA SER LEU PRO ASP LYS LYS LEU SER LEU ALA ALA SEQRES 11 B 423 CYS ARG ALA PHE ASN ASP TRP VAL VAL GLY GLU VAL PRO SEQRES 12 B 423 ASP ALA HIS PRO GLY ARG PHE ILE PRO ILE GLY ILE ILE SEQRES 13 B 423 PRO PHE PHE ASP ALA ASP GLU SER VAL ALA GLU VAL HIS SEQRES 14 B 423 ARG ILE ALA ALA MET GLY CYS ARG SER ILE SER ILE PRO SEQRES 15 B 423 GLU THR PRO TYR GLY VAL GLY GLU GLY PHE PRO ASP PHE SEQRES 16 B 423 LYS SER GLY TYR TRP ASP PRO ILE PHE LYS ALA CYS VAL SEQRES 17 B 423 GLU HIS ASN ILE VAL LEU SER LEU HIS ILE GLY GLY GLY SEQRES 18 B 423 ILE ASN LEU VAL LYS ARG PRO GLU GLY PHE ASP ILE ASP SEQRES 19 B 423 ASN MET LEU MET LEU THR PRO LEU ILE SER THR ILE ALA SEQRES 20 B 423 ALA THR ASP MET MET LEU SER GLY ALA PHE LYS LYS PHE SEQRES 21 B 423 PRO ASP LEU LYS VAL ALA MET SER GLU GLY GLY VAL GLY SEQRES 22 B 423 TRP VAL ALA PRO TRP LEU ASP ARG LEU ASP ARG HIS ILE SEQRES 23 B 423 VAL ASN GLN SER TRP THR GLY THR SER PHE LEU PRO LYS SEQRES 24 B 423 GLY MET THR PRO THR ASP VAL TRP ARG LYS ASN PHE LEU SEQRES 25 B 423 ALA CYS TYR ILE THR GLU PRO SER GLY LEU ASN ASN ARG SEQRES 26 B 423 HIS ARG LEU GLY VAL ASP THR ILE ALA TRP GLU CYS ASP SEQRES 27 B 423 TYR PRO HIS SER ASP SER THR TRP PRO ARG SER PRO GLU SEQRES 28 B 423 THR LEU LYS SER GLU LEU ASP ALA ALA ARG CYS THR ASP SEQRES 29 B 423 GLU GLU VAL ASP LYS ILE THR PHE ALA ASN ALA ALA LYS SEQRES 30 B 423 PHE PHE ASP TRP ASP PRO PHE GLU HIS ILE PRO ARG GLU SEQRES 31 B 423 GLU ALA THR VAL GLY ALA LEU ARG ALA ARG ALA THR ASP SEQRES 32 B 423 VAL ASP ILE SER GLU THR SER LYS GLU GLU TYR ARG ARG SEQRES 33 B 423 ARG TYR GLU LEU THR HIS SER HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET MN A 504 1 HET MN A 505 1 HET MG A 506 1 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HET MN B 505 1 HET MN B 506 1 HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 7(C3 H8 O3) FORMUL 6 MN 4(MN 2+) FORMUL 8 MG MG 2+ FORMUL 15 HOH *671(H2 O) HELIX 1 AA1 LYS A 2 MET A 6 5 5 HELIX 2 AA2 ASP A 20 PHE A 26 1 7 HELIX 3 AA3 PRO A 27 ALA A 34 5 8 HELIX 4 AA4 PRO A 68 TRP A 72 5 5 HELIX 5 AA5 GLY A 78 MET A 82 5 5 HELIX 6 AA6 ARG A 83 TYR A 87 5 5 HELIX 7 AA7 ASP A 88 GLY A 100 1 13 HELIX 8 AA8 GLY A 115 SER A 120 1 6 HELIX 9 AA9 ASP A 123 VAL A 139 1 17 HELIX 10 AB1 GLY A 140 HIS A 146 1 7 HELIX 11 AB2 ASP A 160 ALA A 173 1 14 HELIX 12 AB3 THR A 184 VAL A 188 5 5 HELIX 13 AB4 ASP A 194 GLY A 198 5 5 HELIX 14 AB5 TRP A 200 HIS A 210 1 11 HELIX 15 AB6 GLY A 220 VAL A 225 5 6 HELIX 16 AB7 ASP A 232 THR A 240 1 9 HELIX 17 AB8 PRO A 241 ILE A 243 5 3 HELIX 18 AB9 SER A 244 SER A 254 1 11 HELIX 19 AC1 GLY A 255 PHE A 260 1 6 HELIX 20 AC2 TRP A 274 GLN A 289 1 16 HELIX 21 AC3 SER A 290 GLY A 293 5 4 HELIX 22 AC4 THR A 302 ASN A 310 1 9 HELIX 23 AC5 SER A 320 ASN A 323 5 4 HELIX 24 AC6 ASN A 324 GLY A 329 1 6 HELIX 25 AC7 ARG A 348 ALA A 360 1 13 HELIX 26 AC8 THR A 363 PHE A 372 1 10 HELIX 27 AC9 PHE A 372 PHE A 379 1 8 HELIX 28 AD1 PRO A 388 ALA A 392 5 5 HELIX 29 AD2 THR A 393 ALA A 399 1 7 HELIX 30 AD3 SER A 410 HIS A 422 1 13 HELIX 31 AD4 LYS B 2 MET B 6 5 5 HELIX 32 AD5 ASP B 20 PHE B 26 1 7 HELIX 33 AD6 PRO B 27 ALA B 34 5 8 HELIX 34 AD7 PRO B 68 TRP B 72 5 5 HELIX 35 AD8 GLY B 78 MET B 82 5 5 HELIX 36 AD9 ARG B 83 TYR B 87 5 5 HELIX 37 AE1 ASP B 88 ASN B 99 1 12 HELIX 38 AE2 GLY B 115 SER B 120 1 6 HELIX 39 AE3 ASP B 123 GLY B 140 1 18 HELIX 40 AE4 GLY B 140 HIS B 146 1 7 HELIX 41 AE5 ASP B 160 ALA B 173 1 14 HELIX 42 AE6 THR B 184 VAL B 188 5 5 HELIX 43 AE7 ASP B 194 GLY B 198 5 5 HELIX 44 AE8 TRP B 200 HIS B 210 1 11 HELIX 45 AE9 GLY B 220 VAL B 225 5 6 HELIX 46 AF1 ASP B 232 THR B 240 1 9 HELIX 47 AF2 PRO B 241 ILE B 243 5 3 HELIX 48 AF3 SER B 244 SER B 254 1 11 HELIX 49 AF4 GLY B 255 PHE B 260 1 6 HELIX 50 AF5 TRP B 274 GLN B 289 1 16 HELIX 51 AF6 SER B 290 GLY B 293 5 4 HELIX 52 AF7 THR B 302 ASN B 310 1 9 HELIX 53 AF8 SER B 320 ASN B 323 5 4 HELIX 54 AF9 ASN B 324 GLY B 329 1 6 HELIX 55 AG1 ARG B 348 ALA B 360 1 13 HELIX 56 AG2 THR B 363 PHE B 372 1 10 HELIX 57 AG3 PHE B 372 PHE B 379 1 8 HELIX 58 AG4 PRO B 388 ALA B 392 5 5 HELIX 59 AG5 THR B 393 ALA B 399 1 7 HELIX 60 AG6 ARG B 400 THR B 402 5 3 HELIX 61 AG7 SER B 410 HIS B 422 1 13 SHEET 1 AA1 2 MET A 8 ILE A 9 0 SHEET 2 AA1 2 THR A 101 ALA A 103 1 O LEU A 102 N MET A 8 SHEET 1 AA2 2 ASP A 13 HIS A 14 0 SHEET 2 AA2 2 LEU A 106 PHE A 107 1 O PHE A 107 N ASP A 13 SHEET 1 AA3 3 LYS A 36 HIS A 40 0 SHEET 2 AA3 3 ASN A 43 PHE A 51 -1 O ALA A 48 N THR A 38 SHEET 3 AA3 3 THR A 54 VAL A 56 -1 O VAL A 56 N TRP A 49 SHEET 1 AA4 2 SER A 58 SER A 59 0 SHEET 2 AA4 2 PRO A 76 THR A 77 -1 O THR A 77 N SER A 58 SHEET 1 AA5 6 ILE A 153 GLY A 154 0 SHEET 2 AA5 6 SER A 178 SER A 180 1 O SER A 180 N GLY A 154 SHEET 3 AA5 6 VAL A 213 SER A 215 1 O SER A 215 N ILE A 179 SHEET 4 AA5 6 VAL A 265 MET A 267 1 O ALA A 266 N LEU A 214 SHEET 5 AA5 6 PHE A 311 TYR A 315 1 O LEU A 312 N MET A 267 SHEET 6 AA5 6 ILE A 333 TRP A 335 1 O ALA A 334 N ALA A 313 SHEET 1 AA6 2 MET B 8 ILE B 9 0 SHEET 2 AA6 2 THR B 101 ALA B 103 1 O LEU B 102 N MET B 8 SHEET 1 AA7 2 ASP B 13 HIS B 14 0 SHEET 2 AA7 2 LEU B 106 PHE B 107 1 O PHE B 107 N ASP B 13 SHEET 1 AA8 3 LYS B 36 HIS B 40 0 SHEET 2 AA8 3 ASN B 43 PHE B 51 -1 O GLN B 50 N LYS B 36 SHEET 3 AA8 3 THR B 54 VAL B 56 -1 O VAL B 56 N TRP B 49 SHEET 1 AA9 2 SER B 58 SER B 59 0 SHEET 2 AA9 2 PRO B 76 THR B 77 -1 O THR B 77 N SER B 58 SHEET 1 AB1 6 ILE B 153 GLY B 154 0 SHEET 2 AB1 6 SER B 178 SER B 180 1 O SER B 180 N GLY B 154 SHEET 3 AB1 6 VAL B 213 SER B 215 1 O SER B 215 N ILE B 179 SHEET 4 AB1 6 VAL B 265 MET B 267 1 O ALA B 266 N LEU B 214 SHEET 5 AB1 6 PHE B 311 TYR B 315 1 O LEU B 312 N MET B 267 SHEET 6 AB1 6 ILE B 333 TRP B 335 1 O ALA B 334 N ALA B 313 LINK OD1 ASP A 12 MN MN A 504 1555 1555 2.32 LINK OD2 ASP A 12 MN MN A 504 1555 1555 2.30 LINK NE2 HIS A 14 MN MN A 504 1555 1555 2.22 LINK NE2 HIS A 217 MN MN A 504 1555 1555 2.18 LINK OE1 GLU A 269 MN MN A 504 1555 1555 2.17 LINK OE1 GLU A 269 MN MN A 505 1555 1555 2.45 LINK OE2 GLU A 269 MN MN A 505 1555 1555 2.20 LINK OD1 ASP A 338 MN MN A 504 1555 1555 2.17 LINK OD2 ASP A 338 MN MN A 505 1555 1555 2.13 LINK ND1 HIS A 341 MN MN A 505 1555 1555 2.18 LINK MN MN A 505 O HOH A 624 1555 1555 2.16 LINK MN MN A 505 O HOH A 811 1555 1555 2.12 LINK MG MG A 506 O HOH A 651 1555 2655 2.09 LINK MG MG A 506 O HOH A 704 1555 2655 2.21 LINK MG MG A 506 O HOH A 755 1555 1555 2.19 LINK MG MG A 506 O HOH A 809 1555 1555 2.01 LINK MG MG A 506 O HOH A 899 1555 2655 2.18 LINK MG MG A 506 O HOH A 942 1555 2655 2.04 LINK OD1 ASP B 12 MN MN B 505 1555 1555 2.33 LINK OD2 ASP B 12 MN MN B 505 1555 1555 2.22 LINK NE2 HIS B 14 MN MN B 505 1555 1555 2.28 LINK NE2 HIS B 217 MN MN B 505 1555 1555 2.25 LINK OE1 GLU B 269 MN MN B 505 1555 1555 2.14 LINK OE1 GLU B 269 MN MN B 506 1555 1555 2.34 LINK OE2 GLU B 269 MN MN B 506 1555 1555 2.17 LINK OD1 ASP B 338 MN MN B 505 1555 1555 2.12 LINK OD2 ASP B 338 MN MN B 506 1555 1555 2.13 LINK ND1 HIS B 341 MN MN B 506 1555 1555 2.14 LINK MN MN B 506 O HOH B 607 1555 1555 2.18 LINK MN MN B 506 O HOH B 804 1555 1555 2.18 CISPEP 1 TYR A 339 PRO A 340 0 -0.41 CISPEP 2 TRP A 346 PRO A 347 0 2.60 CISPEP 3 TYR B 339 PRO B 340 0 2.75 CISPEP 4 TRP B 346 PRO B 347 0 -1.00 CRYST1 63.744 92.693 145.122 90.00 99.94 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015688 0.000000 0.002750 0.00000 SCALE2 0.000000 0.010788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006996 0.00000