HEADER METAL BINDING PROTEIN 14-NOV-23 8UZ9 TITLE FUNDAMENTAL CHARACTERIZATION OF CHELATED AND CRYSTALLIZED ACTINIUM IN TITLE 2 A MACROMOLECULAR HOST COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LCN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.B.RUPERT,R.K.STRONG REVDAT 1 25-SEP-24 8UZ9 0 JRNL AUTH J.N.WACKER,J.J.WOODS,P.B.RUPERT,A.PETERSON,M.ALLAIRE, JRNL AUTH 2 W.W.LUKENS,A.N.GAISER,S.G.MINASIAN,R.K.STRONG,R.J.ABERGEL JRNL TITL ACTINIUM CHELATION AND CRYSTALLIZATION IN A MACROMOLECULAR JRNL TITL 2 SCAFFOLD. JRNL REF NAT COMMUN V. 15 5741 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39009580 JRNL DOI 10.1038/S41467-024-50017-5 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 45773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2438 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3094 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4115 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80000 REMARK 3 B22 (A**2) : 0.80000 REMARK 3 B33 (A**2) : -1.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.425 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4325 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4002 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5877 ; 1.435 ; 1.676 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9202 ; 1.238 ; 1.595 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 7.594 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;34.462 ;23.270 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;14.768 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.059 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4899 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1039 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2065 ; 3.681 ; 4.629 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2064 ; 3.675 ; 4.629 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2576 ; 5.221 ; 6.912 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2577 ; 5.221 ; 6.913 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2260 ; 4.610 ; 5.172 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2253 ; 4.542 ; 5.155 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3290 ; 6.890 ; 7.555 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4502 ; 9.152 ;52.536 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4501 ; 9.150 ;52.518 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 5066 0.10 0.05 REMARK 3 2 A C 5272 0.11 0.05 REMARK 3 3 B C 5080 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1753 74.7773 57.7587 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1735 REMARK 3 T33: 0.2266 T12: 0.0591 REMARK 3 T13: 0.0279 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.7673 L22: 1.4065 REMARK 3 L33: 0.3899 L12: -0.7389 REMARK 3 L13: -0.1759 L23: 0.2521 REMARK 3 S TENSOR REMARK 3 S11: 0.1466 S12: 0.1253 S13: -0.0218 REMARK 3 S21: -0.0071 S22: -0.1297 S23: -0.0284 REMARK 3 S31: -0.0635 S32: -0.0933 S33: -0.0169 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 53.8114 97.6666 33.8809 REMARK 3 T TENSOR REMARK 3 T11: 0.3605 T22: 0.5039 REMARK 3 T33: 0.1158 T12: -0.0701 REMARK 3 T13: -0.0038 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.3184 L22: 5.7092 REMARK 3 L33: 1.8027 L12: -2.6928 REMARK 3 L13: -1.1356 L23: 1.3146 REMARK 3 S TENSOR REMARK 3 S11: 0.1277 S12: 0.7240 S13: -0.0937 REMARK 3 S21: 0.5171 S22: -0.5175 S23: 0.0008 REMARK 3 S31: 0.2503 S32: -0.3999 S33: 0.3897 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 201 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2607 46.5437 42.1449 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1750 REMARK 3 T33: 0.2307 T12: -0.0166 REMARK 3 T13: 0.0222 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.7482 L22: 0.3480 REMARK 3 L33: 0.8028 L12: -0.0688 REMARK 3 L13: 0.1810 L23: -0.2056 REMARK 3 S TENSOR REMARK 3 S11: -0.0388 S12: 0.0566 S13: -0.0232 REMARK 3 S21: -0.0199 S22: -0.0153 S23: -0.0198 REMARK 3 S31: 0.0574 S32: -0.0318 S33: 0.0541 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8UZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 82.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACETATE (PH 4), LI2SO4, NACL, AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.63650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.42750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.42750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.81825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.42750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.42750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.45475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.42750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.42750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.81825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.42750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.42750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.45475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.63650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLY A 178 REMARK 465 GLN B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 GLU B 44 REMARK 465 ASP B 45 REMARK 465 LYS B 46 REMARK 465 ASP B 47 REMARK 465 GLY B 178 REMARK 465 GLN C 1 REMARK 465 ASP C 2 REMARK 465 SER C 3 REMARK 465 THR C 4 REMARK 465 GLY C 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 4 OG1 CG2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 SER B 5 CB OG REMARK 470 ASP B 6 CG OD1 OD2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LEU B 70 CG CD1 CD2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 TRP B 79 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 79 CZ3 CH2 REMARK 470 GLN B 88 CG CD OE1 NE2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 SER B 127 OG REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 LEU B 144 CG CD1 CD2 REMARK 470 THR B 145 OG1 CG2 REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 ARG B 154 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 ARG C 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 LYS C 98 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O8 4OL C 202 O HOH C 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 57 CD GLU A 57 OE2 0.068 REMARK 500 GLU C 150 CD GLU C 150 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 62 7.08 81.21 REMARK 500 TYR A 115 -39.79 70.47 REMARK 500 GLN A 117 -47.55 -136.05 REMARK 500 CYS A 175 -40.80 78.38 REMARK 500 LYS B 62 -0.48 82.94 REMARK 500 TYR B 115 -41.18 72.31 REMARK 500 GLN B 117 -50.33 -131.81 REMARK 500 CYS B 175 -40.75 79.05 REMARK 500 LYS C 62 3.00 82.58 REMARK 500 TYR C 115 -40.03 67.51 REMARK 500 THR C 145 152.39 -49.71 REMARK 500 CYS C 175 -41.64 78.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 4OL A 201 REMARK 610 4OL B 201 DBREF 8UZ9 A 1 178 UNP P80188 NGAL_HUMAN 21 198 DBREF 8UZ9 B 1 178 UNP P80188 NGAL_HUMAN 21 198 DBREF 8UZ9 C 1 178 UNP P80188 NGAL_HUMAN 21 198 SEQADV 8UZ9 SER A 87 UNP P80188 CYS 107 CONFLICT SEQADV 8UZ9 SER B 87 UNP P80188 CYS 107 CONFLICT SEQADV 8UZ9 SER C 87 UNP P80188 CYS 107 CONFLICT SEQRES 1 A 178 GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO PRO LEU SEQRES 2 A 178 SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP ASN GLN SEQRES 3 A 178 PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA GLY ASN SEQRES 4 A 178 ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS MET TYR SEQRES 5 A 178 ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER TYR ASN SEQRES 6 A 178 VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS ASP TYR SEQRES 7 A 178 TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO GLY GLU SEQRES 8 A 178 PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY LEU THR SEQRES 9 A 178 SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR ASN GLN SEQRES 10 A 178 HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN ASN ARG SEQRES 11 A 178 GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR LYS GLU SEQRES 12 A 178 LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG PHE SER SEQRES 13 A 178 LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL PHE PRO SEQRES 14 A 178 VAL PRO ILE ASP GLN CYS ILE ASP GLY SEQRES 1 B 178 GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO PRO LEU SEQRES 2 B 178 SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP ASN GLN SEQRES 3 B 178 PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA GLY ASN SEQRES 4 B 178 ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS MET TYR SEQRES 5 B 178 ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER TYR ASN SEQRES 6 B 178 VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS ASP TYR SEQRES 7 B 178 TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO GLY GLU SEQRES 8 B 178 PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY LEU THR SEQRES 9 B 178 SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR ASN GLN SEQRES 10 B 178 HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN ASN ARG SEQRES 11 B 178 GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR LYS GLU SEQRES 12 B 178 LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG PHE SER SEQRES 13 B 178 LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL PHE PRO SEQRES 14 B 178 VAL PRO ILE ASP GLN CYS ILE ASP GLY SEQRES 1 C 178 GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO PRO LEU SEQRES 2 C 178 SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP ASN GLN SEQRES 3 C 178 PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA GLY ASN SEQRES 4 C 178 ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS MET TYR SEQRES 5 C 178 ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER TYR ASN SEQRES 6 C 178 VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS ASP TYR SEQRES 7 C 178 TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO GLY GLU SEQRES 8 C 178 PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY LEU THR SEQRES 9 C 178 SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR ASN GLN SEQRES 10 C 178 HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN ASN ARG SEQRES 11 C 178 GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR LYS GLU SEQRES 12 C 178 LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG PHE SER SEQRES 13 C 178 LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL PHE PRO SEQRES 14 C 178 VAL PRO ILE ASP GLN CYS ILE ASP GLY HET ZTM A 200 1 HET 4OL A 201 14 HET ZTM B 200 1 HET 4OL B 201 11 HET ZTM C 201 1 HET 4OL C 202 54 HET SO4 C 203 5 HET SO4 C 204 5 HET CL C 205 1 HETNAM ZTM ACTINIUM ION HETNAM 4OL N,N'-BUTANE-1,4-DIYLBIS[1-HYDROXY-N-(3-{[(1-HYDROXY-6- HETNAM 2 4OL OXO-1,6-DIHYDROPYRIDIN-2-YL)CARBONYL]AMINO}PROPYL)-6- HETNAM 3 4OL OXO-1,6-DIHYDROPYRIDINE-2-CARBOXAMIDE] HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 4 ZTM 3(AC 3+) FORMUL 5 4OL 3(C34 H38 N8 O12) FORMUL 10 SO4 2(O4 S 2-) FORMUL 12 CL CL 1- FORMUL 13 HOH *31(H2 O) HELIX 1 AA1 PRO A 12 VAL A 16 5 5 HELIX 2 AA2 ASN A 96 TYR A 100 5 5 HELIX 3 AA3 THR A 145 LEU A 159 1 15 HELIX 4 AA4 PRO A 162 ASN A 164 5 3 HELIX 5 AA5 PRO B 12 VAL B 16 5 5 HELIX 6 AA6 GLN B 23 GLN B 28 1 6 HELIX 7 AA7 ASN B 96 TYR B 100 5 5 HELIX 8 AA8 THR B 145 LEU B 159 1 15 HELIX 9 AA9 PRO B 162 ASN B 164 5 3 HELIX 10 AB1 PRO C 12 VAL C 16 5 5 HELIX 11 AB2 ASN C 96 TYR C 100 5 5 HELIX 12 AB3 THR C 145 LEU C 159 1 15 HELIX 13 AB4 PRO C 162 ASN C 164 5 3 SHEET 1 AA110 ILE A 166 VAL A 167 0 SHEET 2 AA110 GLY A 29 GLY A 38 -1 N LEU A 36 O VAL A 167 SHEET 3 AA110 ARG A 130 GLY A 139 -1 O GLY A 139 N TYR A 32 SHEET 4 AA110 HIS A 118 SER A 127 -1 N ALA A 119 O TYR A 138 SHEET 5 AA110 LEU A 103 THR A 113 -1 N LEU A 107 O LYS A 124 SHEET 6 AA110 GLU A 91 LEU A 94 -1 N PHE A 92 O VAL A 108 SHEET 7 AA110 LYS A 75 PRO A 85 -1 N VAL A 84 O THR A 93 SHEET 8 AA110 TYR A 64 ARG A 72 -1 N SER A 68 O TRP A 79 SHEET 9 AA110 ALA A 53 LEU A 58 -1 N ILE A 55 O THR A 67 SHEET 10 AA110 GLY A 29 GLY A 38 -1 N GLY A 29 O TYR A 56 SHEET 1 AA210 ILE B 166 VAL B 167 0 SHEET 2 AA210 GLY B 29 GLY B 38 -1 N LEU B 36 O VAL B 167 SHEET 3 AA210 ARG B 130 GLY B 139 -1 O GLY B 139 N TYR B 32 SHEET 4 AA210 HIS B 118 SER B 127 -1 N ALA B 119 O TYR B 138 SHEET 5 AA210 LEU B 103 THR B 113 -1 N LEU B 107 O LYS B 124 SHEET 6 AA210 GLU B 91 LEU B 94 -1 N PHE B 92 O VAL B 108 SHEET 7 AA210 LYS B 75 PRO B 85 -1 N VAL B 84 O THR B 93 SHEET 8 AA210 TYR B 64 ARG B 72 -1 N LEU B 70 O ASP B 77 SHEET 9 AA210 ALA B 53 LEU B 58 -1 N ILE B 55 O THR B 67 SHEET 10 AA210 GLY B 29 GLY B 38 -1 N GLY B 29 O TYR B 56 SHEET 1 AA310 ILE C 166 VAL C 167 0 SHEET 2 AA310 GLY C 29 GLY C 38 -1 N LEU C 36 O VAL C 167 SHEET 3 AA310 ARG C 130 GLY C 139 -1 O GLY C 139 N TYR C 32 SHEET 4 AA310 HIS C 118 SER C 127 -1 N PHE C 123 O LYS C 134 SHEET 5 AA310 LEU C 103 THR C 113 -1 N LEU C 107 O LYS C 124 SHEET 6 AA310 GLU C 91 LEU C 94 -1 N PHE C 92 O VAL C 108 SHEET 7 AA310 LYS C 75 PRO C 85 -1 N VAL C 84 O THR C 93 SHEET 8 AA310 TYR C 64 ARG C 72 -1 N LEU C 70 O ASP C 77 SHEET 9 AA310 ALA C 53 LEU C 58 -1 N ILE C 55 O THR C 67 SHEET 10 AA310 GLY C 29 GLY C 38 -1 N GLY C 29 O TYR C 56 SSBOND 1 CYS A 76 CYS A 175 1555 1555 2.12 SSBOND 2 CYS B 76 CYS B 175 1555 1555 2.07 SSBOND 3 CYS C 76 CYS C 175 1555 1555 2.20 CRYST1 114.855 114.855 119.273 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008707 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008384 0.00000