HEADER HYDROLASE/HYDROLASE INHIBITOR 16-NOV-23 8V04 TITLE HIGH RESOLUTION TMPRSS2 STRUCTURE FOLLOWING ACYLATION BY NAFAMOSTAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEASE SERINE 2 NON-CATALYTIC CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSMEMBRANE PROTEASE SERINE 2; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: PEPTIDASE S1 DOMAIN RESIDUES 256-492; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TMPRSS2, PRSS10; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS DONOR VECTOR FOR BEVS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFHMSP-LIC-C; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: TMPRSS2; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 17 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS DONOR VECTOR FOR BEVS; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PFHMSP-LIC-C KEYWDS INHIBITOR COMPLEX, PROTEASE, VIRAL ENTRY, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE, HYDROLASE-HYDROLASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.J.FRASER,A.DONG,M.KUTERA,A.SEITOVA,Y.LI,A.HUTCHINSON,A.EDWARDS, AUTHOR 2 F.BENARD,H.LEVON,C.ARROWSMITH REVDAT 1 31-JAN-24 8V04 0 JRNL AUTH B.J.FRASER,A.DONG,M.KUTERA,A.SEITOVA,Y.LI,A.HUTCHINSON, JRNL AUTH 2 A.EDWARDS,F.BENARD,H.LEVON,C.ARROWSMITH JRNL TITL HIGH RESOLUTION TMPRSS2 STRUCTURE FOLLOWING ACYLATION BY JRNL TITL 2 NAFAMOSTAT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 49216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2463 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.2220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.51000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : -2.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.615 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3001 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2666 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4108 ; 1.659 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6264 ; 0.596 ; 1.558 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 6.732 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ; 7.446 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 464 ;14.824 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3408 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 600 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1430 ; 2.079 ; 1.971 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1430 ; 2.077 ; 1.970 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1801 ; 3.123 ; 2.943 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1802 ; 3.125 ; 2.945 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1571 ; 3.113 ; 2.387 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1572 ; 3.112 ; 2.388 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2276 ; 4.640 ; 3.413 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3611 ; 6.889 ;30.864 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3611 ; 6.887 ;30.862 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8V04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000279266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94364 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 UL HANGING DROP (2:1 REMARK 280 PROTEIN:PRECIPITANT) GROWN OVER PRECIPITANT SOLUTION CONTAINING REMARK 280 25%PEG4000, 0.2M AMMONIUM SULFATE, AND 0.1M SODIUM ACETATE PH REMARK 280 4.6. PROTEIN (10 MG/ML) WAS IN A BUFFER CONTAINING 25 MM TRIS PH REMARK 280 8.0, 75 MM NACL, AND 2 MM CACL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.25100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 146 REMARK 465 SER A 204 REMARK 465 GLY A 205 REMARK 465 ASP A 251 REMARK 465 ASP A 252 REMARK 465 ASP A 253 REMARK 465 ASP A 254 REMARK 465 LYS A 255 REMARK 465 PHE B 494 REMARK 465 VAL B 495 REMARK 465 GLU B 496 REMARK 465 HIS B 497 REMARK 465 HIS B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 HIS B 501 REMARK 465 HIS B 502 REMARK 465 HIS B 503 REMARK 465 HIS B 504 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 178 CD OE1 OE2 REMARK 470 ASP A 203 CG OD1 OD2 REMARK 470 SER A 208 O REMARK 470 ASN A 218 CG OD1 ND2 REMARK 470 LYS A 223 CD CE NZ REMARK 470 LYS A 234 CD CE NZ REMARK 470 LYS B 340 CE NZ REMARK 470 GLU B 388 CD OE1 OE2 REMARK 470 LYS B 390 CD CE NZ REMARK 470 LYS B 392 CE NZ REMARK 470 GLN B 408 CD OE1 NE2 REMARK 470 ARG B 413 CD NE CZ NH1 NH2 REMARK 470 GLU B 493 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 486 O HOH B 701 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 191 -116.53 52.86 REMARK 500 TYR A 195 -55.10 -125.26 REMARK 500 ASN B 358 -161.91 -160.66 REMARK 500 PRO B 369 154.27 -49.44 REMARK 500 VAL B 415 -101.75 -113.51 REMARK 500 ASN B 433 -28.19 81.48 REMARK 500 SER B 460 -64.30 -124.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 150 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 945 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 303 OD1 REMARK 620 2 ASN B 304 OD1 89.2 REMARK 620 3 HOH B 819 O 61.0 55.4 REMARK 620 4 HOH B 929 O 154.4 100.0 142.8 REMARK 620 N 1 2 3 DBREF 8V04 A 148 255 UNP O15393 TMPS2_HUMAN 148 255 DBREF 8V04 B 256 492 UNP O15393 TMPS2_HUMAN 256 492 SEQADV 8V04 ALA A 146 UNP O15393 EXPRESSION TAG SEQADV 8V04 ALA A 147 UNP O15393 EXPRESSION TAG SEQADV 8V04 ASP A 251 UNP O15393 SER 251 ENGINEERED MUTATION SEQADV 8V04 ASP A 252 UNP O15393 ARG 252 ENGINEERED MUTATION SEQADV 8V04 ASP A 253 UNP O15393 GLN 253 ENGINEERED MUTATION SEQADV 8V04 ASP A 254 UNP O15393 SER 254 ENGINEERED MUTATION SEQADV 8V04 LYS A 255 UNP O15393 ARG 255 ENGINEERED MUTATION SEQADV 8V04 GLU B 493 UNP O15393 EXPRESSION TAG SEQADV 8V04 PHE B 494 UNP O15393 EXPRESSION TAG SEQADV 8V04 VAL B 495 UNP O15393 EXPRESSION TAG SEQADV 8V04 GLU B 496 UNP O15393 EXPRESSION TAG SEQADV 8V04 HIS B 497 UNP O15393 EXPRESSION TAG SEQADV 8V04 HIS B 498 UNP O15393 EXPRESSION TAG SEQADV 8V04 HIS B 499 UNP O15393 EXPRESSION TAG SEQADV 8V04 HIS B 500 UNP O15393 EXPRESSION TAG SEQADV 8V04 HIS B 501 UNP O15393 EXPRESSION TAG SEQADV 8V04 HIS B 502 UNP O15393 EXPRESSION TAG SEQADV 8V04 HIS B 503 UNP O15393 EXPRESSION TAG SEQADV 8V04 HIS B 504 UNP O15393 EXPRESSION TAG SEQRES 1 A 110 ALA ALA CYS VAL ARG LEU TYR GLY PRO ASN PHE ILE LEU SEQRES 2 A 110 GLN VAL TYR SER SER GLN ARG LYS SER TRP HIS PRO VAL SEQRES 3 A 110 CYS GLN ASP ASP TRP ASN GLU ASN TYR GLY ARG ALA ALA SEQRES 4 A 110 CYS ARG ASP MET GLY TYR LYS ASN ASN PHE TYR SER SER SEQRES 5 A 110 GLN GLY ILE VAL ASP ASP SER GLY SER THR SER PHE MET SEQRES 6 A 110 LYS LEU ASN THR SER ALA GLY ASN VAL ASP ILE TYR LYS SEQRES 7 A 110 LYS LEU TYR HIS SER ASP ALA CYS SER SER LYS ALA VAL SEQRES 8 A 110 VAL SER LEU ARG CYS ILE ALA CYS GLY VAL ASN LEU ASN SEQRES 9 A 110 SER ASP ASP ASP ASP LYS SEQRES 1 B 249 ILE VAL GLY GLY GLU SER ALA LEU PRO GLY ALA TRP PRO SEQRES 2 B 249 TRP GLN VAL SER LEU HIS VAL GLN ASN VAL HIS VAL CYS SEQRES 3 B 249 GLY GLY SER ILE ILE THR PRO GLU TRP ILE VAL THR ALA SEQRES 4 B 249 ALA HIS CYS VAL GLU LYS PRO LEU ASN ASN PRO TRP HIS SEQRES 5 B 249 TRP THR ALA PHE ALA GLY ILE LEU ARG GLN SER PHE MET SEQRES 6 B 249 PHE TYR GLY ALA GLY TYR GLN VAL GLU LYS VAL ILE SER SEQRES 7 B 249 HIS PRO ASN TYR ASP SER LYS THR LYS ASN ASN ASP ILE SEQRES 8 B 249 ALA LEU MET LYS LEU GLN LYS PRO LEU THR PHE ASN ASP SEQRES 9 B 249 LEU VAL LYS PRO VAL CYS LEU PRO ASN PRO GLY MET MET SEQRES 10 B 249 LEU GLN PRO GLU GLN LEU CYS TRP ILE SER GLY TRP GLY SEQRES 11 B 249 ALA THR GLU GLU LYS GLY LYS THR SER GLU VAL LEU ASN SEQRES 12 B 249 ALA ALA LYS VAL LEU LEU ILE GLU THR GLN ARG CYS ASN SEQRES 13 B 249 SER ARG TYR VAL TYR ASP ASN LEU ILE THR PRO ALA MET SEQRES 14 B 249 ILE CYS ALA GLY PHE LEU GLN GLY ASN VAL ASP SER CYS SEQRES 15 B 249 GLN GLY ASP SER GLY GLY PRO LEU VAL THR SER LYS ASN SEQRES 16 B 249 ASN ILE TRP TRP LEU ILE GLY ASP THR SER TRP GLY SER SEQRES 17 B 249 GLY CYS ALA LYS ALA TYR ARG PRO GLY VAL TYR GLY ASN SEQRES 18 B 249 VAL MET VAL PHE THR ASP TRP ILE TYR ARG GLN MET ARG SEQRES 19 B 249 ALA ASP GLY GLU PHE VAL GLU HIS HIS HIS HIS HIS HIS SEQRES 20 B 249 HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET NAG C 3 14 HET FUC C 4 10 HET EDO A 301 4 HET UNX A 302 1 HET EDO A 303 4 HET EDO A 304 4 HET GBS B 600 12 HET CIT B 601 13 HET CA B 602 1 HET EDO B 603 4 HET EDO B 604 4 HET EDO B 605 4 HET PG4 B 606 13 HET EDO B 607 4 HET EDO B 608 4 HET EDO B 609 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETNAM GBS 4-CARBAMIMIDAMIDOBENZOIC ACID HETNAM CIT CITRIC ACID HETNAM CA CALCIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GBS NAFAMOSTAT, BOUND FORM FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 4 EDO 9(C2 H6 O2) FORMUL 5 UNX X FORMUL 8 GBS C8 H9 N3 O2 FORMUL 9 CIT C6 H8 O7 FORMUL 10 CA CA 2+ FORMUL 14 PG4 C8 H18 O5 FORMUL 18 HOH *320(H2 O) HELIX 1 AA1 ASN A 177 MET A 188 1 12 HELIX 2 AA2 ASP A 220 LYS A 223 5 4 HELIX 3 AA3 ALA B 294 GLU B 299 5 6 HELIX 4 AA4 ASN B 304 HIS B 307 5 4 HELIX 5 AA5 ARG B 316 MET B 320 5 5 HELIX 6 AA6 GLU B 406 ASN B 411 1 6 HELIX 7 AA7 VAL B 477 ASP B 491 1 15 SHEET 1 AA1 3 VAL A 149 TYR A 152 0 SHEET 2 AA1 3 ILE A 157 SER A 162 -1 O GLN A 159 N ARG A 150 SHEET 3 AA1 3 SER A 167 PRO A 170 -1 O SER A 167 N SER A 162 SHEET 1 AA2 2 SER A 196 ILE A 200 0 SHEET 2 AA2 2 VAL A 236 ARG A 240 -1 O ARG A 240 N SER A 196 SHEET 1 AA3 2 MET A 210 LEU A 212 0 SHEET 2 AA3 2 LEU A 225 HIS A 227 -1 O TYR A 226 N LYS A 211 SHEET 1 AA4 8 GLU B 260 SER B 261 0 SHEET 2 AA4 8 ASN B 398 ILE B 405 -1 O ALA B 399 N GLU B 260 SHEET 3 AA4 8 MET B 424 GLY B 428 -1 O GLY B 428 N LEU B 403 SHEET 4 AA4 8 GLY B 472 ASN B 476 -1 O TYR B 474 N ILE B 425 SHEET 5 AA4 8 ILE B 452 TRP B 461 -1 N ASP B 458 O GLY B 475 SHEET 6 AA4 8 PRO B 444 LYS B 449 -1 N THR B 447 O TRP B 454 SHEET 7 AA4 8 LEU B 378 GLY B 383 -1 N TRP B 380 O VAL B 446 SHEET 8 AA4 8 ASN B 398 ILE B 405 -1 O VAL B 402 N CYS B 379 SHEET 1 AA5 7 GLN B 270 VAL B 275 0 SHEET 2 AA5 7 VAL B 278 ILE B 285 -1 O CYS B 281 N LEU B 273 SHEET 3 AA5 7 TRP B 290 THR B 293 -1 O VAL B 292 N SER B 284 SHEET 4 AA5 7 ALA B 347 LEU B 351 -1 O ALA B 347 N THR B 293 SHEET 5 AA5 7 TYR B 326 SER B 333 -1 N GLU B 329 O LYS B 350 SHEET 6 AA5 7 THR B 309 ALA B 312 -1 N ALA B 310 O TYR B 326 SHEET 7 AA5 7 GLN B 270 VAL B 275 -1 N HIS B 274 O THR B 309 SSBOND 1 CYS A 172 CYS A 231 1555 1555 2.12 SSBOND 2 CYS A 185 CYS A 241 1555 1555 2.13 SSBOND 3 CYS A 244 CYS B 365 1555 1555 2.08 SSBOND 4 CYS B 281 CYS B 297 1555 1555 2.17 SSBOND 5 CYS B 410 CYS B 426 1555 1555 2.08 SSBOND 6 CYS B 437 CYS B 465 1555 1555 2.15 LINK ND2 ASN A 213 C1 NAG C 1 1555 1555 1.45 LINK OG SER B 441 C6 GBS B 600 1555 1555 1.29 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 4 1555 1555 1.44 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.43 LINK OD1AASN B 303 CA CA B 602 1555 1555 2.75 LINK OD1BASN B 304 CA CA B 602 1555 1555 3.10 LINK CA CA B 602 O HOH B 819 1555 1555 2.91 LINK CA CA B 602 O HOH B 929 1555 1555 2.30 CISPEP 1 LYS B 300 PRO B 301 0 8.28 CRYST1 58.757 50.502 64.578 90.00 91.60 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017019 0.000000 0.000475 0.00000 SCALE2 0.000000 0.019801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015491 0.00000