HEADER LIGASE 17-NOV-23 8V0D TITLE UBCH5B-RING3 OF MIB1 FUSION STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBCH5B-RING3 OF MIB1 FUSION PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 EC: 2.3.2.23,2.3.2.24,2.3.2.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B, MIB1, DIP1, SOURCE 6 KIAA1323, ZZANK2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS E3 LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.CAO,S.C.BLACKLOW REVDAT 1 27-NOV-24 8V0D 0 JRNL AUTH R.CAO,S.C.BLACKLOW JRNL TITL UBCH5B-RING3 FUSION STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 18180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1600 - 4.5900 0.92 2563 116 0.1668 0.1672 REMARK 3 2 4.5900 - 3.6500 0.91 2447 128 0.1807 0.2354 REMARK 3 3 3.6500 - 3.1800 0.95 2529 172 0.2366 0.2828 REMARK 3 4 3.1800 - 2.8900 0.92 2470 132 0.2668 0.2779 REMARK 3 5 2.8900 - 2.6900 0.92 2476 153 0.2821 0.2810 REMARK 3 6 2.6900 - 2.5300 0.92 2465 123 0.2712 0.3276 REMARK 3 7 2.5300 - 2.4000 0.86 2292 114 0.3074 0.3103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.325 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.003 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3475 REMARK 3 ANGLE : 0.955 4717 REMARK 3 CHIRALITY : 0.055 517 REMARK 3 PLANARITY : 0.009 615 REMARK 3 DIHEDRAL : 14.007 1341 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN B AND RESID 0:31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.516 -7.995 55.299 REMARK 3 T TENSOR REMARK 3 T11: 0.5553 T22: 0.4191 REMARK 3 T33: 0.5590 T12: 0.0063 REMARK 3 T13: 0.0478 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.3537 L22: 1.2642 REMARK 3 L33: 0.6301 L12: -0.3048 REMARK 3 L13: -0.2711 L23: 0.2588 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: 0.0181 S13: -0.0635 REMARK 3 S21: 0.0378 S22: -0.1639 S23: 0.2129 REMARK 3 S31: 0.3854 S32: -0.0036 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 32:84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.205 3.906 63.961 REMARK 3 T TENSOR REMARK 3 T11: 0.4784 T22: 0.3136 REMARK 3 T33: 0.5066 T12: 0.0334 REMARK 3 T13: 0.0299 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.3661 L22: 2.6798 REMARK 3 L33: 1.5660 L12: 0.5070 REMARK 3 L13: -0.1157 L23: 1.7361 REMARK 3 S TENSOR REMARK 3 S11: -0.1004 S12: -0.0015 S13: 0.1045 REMARK 3 S21: 0.0390 S22: -0.0660 S23: -0.0949 REMARK 3 S31: -0.0970 S32: -0.1753 S33: -0.0014 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 85:98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.781 7.056 51.343 REMARK 3 T TENSOR REMARK 3 T11: 0.6259 T22: 0.4341 REMARK 3 T33: 0.5607 T12: -0.0979 REMARK 3 T13: 0.0046 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.5669 L22: 0.1828 REMARK 3 L33: 0.2242 L12: -0.0582 REMARK 3 L13: 0.1876 L23: -0.1962 REMARK 3 S TENSOR REMARK 3 S11: -0.4203 S12: -0.0868 S13: 0.0916 REMARK 3 S21: -0.0762 S22: 0.2741 S23: -0.2182 REMARK 3 S31: -0.2515 S32: 0.2909 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 99:130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.475 10.516 63.999 REMARK 3 T TENSOR REMARK 3 T11: 0.5159 T22: 0.3626 REMARK 3 T33: 0.5321 T12: -0.0088 REMARK 3 T13: 0.0218 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 0.2861 L22: 0.3021 REMARK 3 L33: 0.3020 L12: 0.1011 REMARK 3 L13: 0.1331 L23: 0.0293 REMARK 3 S TENSOR REMARK 3 S11: -0.1127 S12: 0.2099 S13: -0.1335 REMARK 3 S21: -0.3385 S22: 0.3362 S23: -0.4206 REMARK 3 S31: -0.2145 S32: 0.3870 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 131:148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.044 7.511 77.494 REMARK 3 T TENSOR REMARK 3 T11: 0.8618 T22: 0.4409 REMARK 3 T33: 0.6422 T12: 0.0854 REMARK 3 T13: 0.0411 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.1860 L22: 0.6689 REMARK 3 L33: 0.5019 L12: 0.3503 REMARK 3 L13: -0.3649 L23: 0.1282 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: -0.3339 S13: 0.1989 REMARK 3 S21: 0.6994 S22: -0.2666 S23: -0.2243 REMARK 3 S31: 0.0736 S32: 0.0413 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 943:961 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.358 -23.457 43.590 REMARK 3 T TENSOR REMARK 3 T11: 1.5094 T22: 0.6896 REMARK 3 T33: 0.6683 T12: 0.1309 REMARK 3 T13: 0.0230 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0503 L22: 0.1500 REMARK 3 L33: 0.0225 L12: -0.1576 REMARK 3 L13: 0.0081 L23: -0.0584 REMARK 3 S TENSOR REMARK 3 S11: -0.3550 S12: 0.1805 S13: 0.2588 REMARK 3 S21: 0.5724 S22: 0.3589 S23: -0.7436 REMARK 3 S31: -0.4288 S32: 0.0502 S33: -0.0007 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 962:1006 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.213 -0.688 34.917 REMARK 3 T TENSOR REMARK 3 T11: 0.8044 T22: 0.5886 REMARK 3 T33: 0.5761 T12: 0.0319 REMARK 3 T13: 0.1172 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.1579 L22: 0.1206 REMARK 3 L33: 1.1201 L12: -0.0718 REMARK 3 L13: 0.6341 L23: -0.5545 REMARK 3 S TENSOR REMARK 3 S11: 0.3031 S12: 0.2378 S13: 0.1493 REMARK 3 S21: 0.0141 S22: -0.0926 S23: 0.1896 REMARK 3 S31: -0.0255 S32: -0.0932 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 0:38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.493 -34.068 18.692 REMARK 3 T TENSOR REMARK 3 T11: 0.4609 T22: 0.7792 REMARK 3 T33: 0.5871 T12: 0.0564 REMARK 3 T13: -0.0242 T23: 0.1032 REMARK 3 L TENSOR REMARK 3 L11: 0.9899 L22: 1.3457 REMARK 3 L33: 1.3707 L12: -0.8617 REMARK 3 L13: -0.4476 L23: 0.0341 REMARK 3 S TENSOR REMARK 3 S11: 0.1694 S12: -0.5003 S13: -0.5185 REMARK 3 S21: 0.4118 S22: 0.0186 S23: -0.1896 REMARK 3 S31: 0.2441 S32: -0.3652 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 39:111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.265 -30.219 6.195 REMARK 3 T TENSOR REMARK 3 T11: 0.3090 T22: 0.6781 REMARK 3 T33: 0.5044 T12: 0.0728 REMARK 3 T13: -0.0295 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.0359 L22: 0.8875 REMARK 3 L33: 2.7007 L12: -0.0009 REMARK 3 L13: 0.2653 L23: -0.1741 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: -0.1470 S13: 0.1599 REMARK 3 S21: -0.1335 S22: -0.0305 S23: -0.1637 REMARK 3 S31: -0.3310 S32: -0.5297 S33: 0.0004 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 112:120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.003 -24.913 -4.348 REMARK 3 T TENSOR REMARK 3 T11: 0.9175 T22: 0.7335 REMARK 3 T33: 0.6746 T12: 0.3282 REMARK 3 T13: -0.0019 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.1209 L22: 0.6614 REMARK 3 L33: 0.1447 L12: 0.1796 REMARK 3 L13: 0.1495 L23: 0.2522 REMARK 3 S TENSOR REMARK 3 S11: -0.1470 S12: 0.2752 S13: 0.8338 REMARK 3 S21: 0.0286 S22: 0.1765 S23: -0.3270 REMARK 3 S31: -1.3427 S32: -0.7853 S33: 0.0014 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN A AND RESID 121:148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.224 -37.516 -7.862 REMARK 3 T TENSOR REMARK 3 T11: 0.3037 T22: 1.3413 REMARK 3 T33: 0.4900 T12: -0.0377 REMARK 3 T13: -0.2486 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.8081 L22: 0.7490 REMARK 3 L33: 1.8950 L12: -0.5761 REMARK 3 L13: -0.5237 L23: 0.6025 REMARK 3 S TENSOR REMARK 3 S11: -0.1169 S12: 0.7617 S13: -0.6945 REMARK 3 S21: 0.0874 S22: -0.1098 S23: 1.0444 REMARK 3 S31: 0.6759 S32: -2.0013 S33: -0.3384 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN A AND RESID 945:961 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.221 -26.335 35.859 REMARK 3 T TENSOR REMARK 3 T11: 1.1569 T22: 0.7645 REMARK 3 T33: 0.8706 T12: -0.0114 REMARK 3 T13: 0.1663 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.1512 L22: 0.0462 REMARK 3 L33: 0.0186 L12: 0.1109 REMARK 3 L13: 0.0934 L23: 0.0396 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: 0.3589 S13: -0.4639 REMARK 3 S21: -0.1712 S22: 0.4008 S23: 0.5637 REMARK 3 S31: 0.0884 S32: -0.2102 S33: -0.0007 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: ( CHAIN A AND RESID 962:1006 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.414 -10.365 23.058 REMARK 3 T TENSOR REMARK 3 T11: 0.6484 T22: 0.7789 REMARK 3 T33: 0.4688 T12: 0.1594 REMARK 3 T13: -0.0126 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.9675 L22: 0.9218 REMARK 3 L33: 0.2993 L12: 0.2556 REMARK 3 L13: 0.3454 L23: 0.0128 REMARK 3 S TENSOR REMARK 3 S11: 0.2686 S12: 0.0790 S13: -0.0531 REMARK 3 S21: -0.1840 S22: -0.2551 S23: -0.0489 REMARK 3 S31: -0.3054 S32: 0.3866 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 0 through 99 or REMARK 3 resid 101 through 104 or resid 106 REMARK 3 through 148)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 0 through 99 or REMARK 3 resid 101 through 104 or resid 106 REMARK 3 through 148)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and resid 945 through 1006) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "D" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8V0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000279159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 37.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% V/V TACSIMATETM PH 6.0, 12% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.55950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 149 REMARK 465 GLY B 150 REMARK 465 SER B 151 REMARK 465 GLY B 152 REMARK 465 GLY B 153 REMARK 465 GLY B 154 REMARK 465 SER B 155 REMARK 465 GLY B 156 REMARK 465 GLY B 157 REMARK 465 GLY B 158 REMARK 465 SER B 159 REMARK 465 GLY B 160 REMARK 465 GLY B 161 REMARK 465 GLY B 162 REMARK 465 SER B 163 REMARK 465 GLY B 164 REMARK 465 GLY B 165 REMARK 465 LYS B 936 REMARK 465 ASP B 937 REMARK 465 LYS B 938 REMARK 465 ASP B 939 REMARK 465 ASN B 940 REMARK 465 THR B 941 REMARK 465 ASN B 942 REMARK 465 GLY A 149 REMARK 465 GLY A 150 REMARK 465 SER A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 GLY A 154 REMARK 465 SER A 155 REMARK 465 GLY A 156 REMARK 465 GLY A 157 REMARK 465 GLY A 158 REMARK 465 SER A 159 REMARK 465 GLY A 160 REMARK 465 GLY A 161 REMARK 465 GLY A 162 REMARK 465 SER A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 LYS A 936 REMARK 465 ASP A 937 REMARK 465 LYS A 938 REMARK 465 ASP A 939 REMARK 465 ASN A 940 REMARK 465 THR A 941 REMARK 465 ASN A 942 REMARK 465 VAL A 943 REMARK 465 ASN A 944 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 46 O HOH B 1201 2.05 REMARK 500 NH2 ARG A 5 O LEU A 97 2.19 REMARK 500 OXT TYR A 1006 O HOH A 1201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 90 -85.71 -136.88 REMARK 500 ARG B 996 -1.18 73.89 REMARK 500 ASP A 16 75.39 -152.14 REMARK 500 ARG A 90 -78.32 -140.63 REMARK 500 PRO A 115 25.13 -74.88 REMARK 500 LEU A 967 17.93 56.61 REMARK 500 ARG A 996 -0.53 74.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 963 SG REMARK 620 2 CYS B 966 SG 103.0 REMARK 620 3 CYS B 982 SG 122.2 113.9 REMARK 620 4 CYS B 985 SG 116.7 104.9 95.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 977 SG REMARK 620 2 HIS B 979 ND1 114.6 REMARK 620 3 CYS B 992 SG 103.4 101.6 REMARK 620 4 CYS B 995 SG 109.9 116.8 109.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 32 NE2 REMARK 620 2 ASP A 42 OD2 91.4 REMARK 620 3 HIS A 55 NE2 112.6 98.0 REMARK 620 4 CYS A 111 SG 91.5 0.8 98.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 963 SG REMARK 620 2 CYS A 966 SG 101.8 REMARK 620 3 CYS A 982 SG 117.8 113.7 REMARK 620 4 CYS A 985 SG 112.1 115.8 96.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 977 SG REMARK 620 2 HIS A 979 ND1 118.1 REMARK 620 3 CYS A 992 SG 104.7 104.9 REMARK 620 4 CYS A 995 SG 106.5 110.6 111.8 REMARK 620 N 1 2 3 DBREF 8V0D B 1 147 UNP P62837 UB2D2_HUMAN 1 147 DBREF 8V0D B 936 1006 UNP Q86YT6 MIB1_HUMAN 936 1006 DBREF 8V0D A 1 147 UNP P62837 UB2D2_HUMAN 1 147 DBREF 8V0D A 936 1006 UNP Q86YT6 MIB1_HUMAN 936 1006 SEQADV 8V0D SER B 0 UNP P62837 EXPRESSION TAG SEQADV 8V0D GLY B 148 UNP P62837 LINKER SEQADV 8V0D GLY B 149 UNP P62837 LINKER SEQADV 8V0D GLY B 150 UNP P62837 LINKER SEQADV 8V0D SER B 151 UNP P62837 LINKER SEQADV 8V0D GLY B 152 UNP P62837 LINKER SEQADV 8V0D GLY B 153 UNP P62837 LINKER SEQADV 8V0D GLY B 154 UNP P62837 LINKER SEQADV 8V0D SER B 155 UNP P62837 LINKER SEQADV 8V0D GLY B 156 UNP P62837 LINKER SEQADV 8V0D GLY B 157 UNP P62837 LINKER SEQADV 8V0D GLY B 158 UNP P62837 LINKER SEQADV 8V0D SER B 159 UNP P62837 LINKER SEQADV 8V0D GLY B 160 UNP P62837 LINKER SEQADV 8V0D GLY B 161 UNP P62837 LINKER SEQADV 8V0D GLY B 162 UNP P62837 LINKER SEQADV 8V0D SER B 163 UNP P62837 LINKER SEQADV 8V0D GLY B 164 UNP P62837 LINKER SEQADV 8V0D GLY B 165 UNP P62837 LINKER SEQADV 8V0D SER A 0 UNP P62837 EXPRESSION TAG SEQADV 8V0D GLY A 148 UNP P62837 LINKER SEQADV 8V0D GLY A 149 UNP P62837 LINKER SEQADV 8V0D GLY A 150 UNP P62837 LINKER SEQADV 8V0D SER A 151 UNP P62837 LINKER SEQADV 8V0D GLY A 152 UNP P62837 LINKER SEQADV 8V0D GLY A 153 UNP P62837 LINKER SEQADV 8V0D GLY A 154 UNP P62837 LINKER SEQADV 8V0D SER A 155 UNP P62837 LINKER SEQADV 8V0D GLY A 156 UNP P62837 LINKER SEQADV 8V0D GLY A 157 UNP P62837 LINKER SEQADV 8V0D GLY A 158 UNP P62837 LINKER SEQADV 8V0D SER A 159 UNP P62837 LINKER SEQADV 8V0D GLY A 160 UNP P62837 LINKER SEQADV 8V0D GLY A 161 UNP P62837 LINKER SEQADV 8V0D GLY A 162 UNP P62837 LINKER SEQADV 8V0D SER A 163 UNP P62837 LINKER SEQADV 8V0D GLY A 164 UNP P62837 LINKER SEQADV 8V0D GLY A 165 UNP P62837 LINKER SEQRES 1 B 237 SER MET ALA LEU LYS ARG ILE HIS LYS GLU LEU ASN ASP SEQRES 2 B 237 LEU ALA ARG ASP PRO PRO ALA GLN CYS SER ALA GLY PRO SEQRES 3 B 237 VAL GLY ASP ASP MET PHE HIS TRP GLN ALA THR ILE MET SEQRES 4 B 237 GLY PRO ASN ASP SER PRO TYR GLN GLY GLY VAL PHE PHE SEQRES 5 B 237 LEU THR ILE HIS PHE PRO THR ASP TYR PRO PHE LYS PRO SEQRES 6 B 237 PRO LYS VAL ALA PHE THR THR ARG ILE TYR HIS PRO ASN SEQRES 7 B 237 ILE ASN SER ASN GLY SER ILE CYS LEU ASP ILE LEU ARG SEQRES 8 B 237 SER GLN TRP SER PRO ALA LEU THR ILE SER LYS VAL LEU SEQRES 9 B 237 LEU SER ILE CYS SER LEU LEU CYS ASP PRO ASN PRO ASP SEQRES 10 B 237 ASP PRO LEU VAL PRO GLU ILE ALA ARG ILE TYR LYS THR SEQRES 11 B 237 ASP ARG GLU LYS TYR ASN ARG ILE ALA ARG GLU TRP THR SEQRES 12 B 237 GLN LYS TYR ALA MET GLY GLY GLY SER GLY GLY GLY SER SEQRES 13 B 237 GLY GLY GLY SER GLY GLY GLY SER GLY GLY LYS ASP LYS SEQRES 14 B 237 ASP ASN THR ASN VAL ASN ALA ASP VAL GLN LYS LEU GLN SEQRES 15 B 237 GLN GLN LEU GLN ASP ILE LYS GLU GLN THR MET CYS PRO SEQRES 16 B 237 VAL CYS LEU ASP ARG LEU LYS ASN MET ILE PHE LEU CYS SEQRES 17 B 237 GLY HIS GLY THR CYS GLN LEU CYS GLY ASP ARG MET SER SEQRES 18 B 237 GLU CYS PRO ILE CYS ARG LYS ALA ILE GLU ARG ARG ILE SEQRES 19 B 237 LEU LEU TYR SEQRES 1 A 237 SER MET ALA LEU LYS ARG ILE HIS LYS GLU LEU ASN ASP SEQRES 2 A 237 LEU ALA ARG ASP PRO PRO ALA GLN CYS SER ALA GLY PRO SEQRES 3 A 237 VAL GLY ASP ASP MET PHE HIS TRP GLN ALA THR ILE MET SEQRES 4 A 237 GLY PRO ASN ASP SER PRO TYR GLN GLY GLY VAL PHE PHE SEQRES 5 A 237 LEU THR ILE HIS PHE PRO THR ASP TYR PRO PHE LYS PRO SEQRES 6 A 237 PRO LYS VAL ALA PHE THR THR ARG ILE TYR HIS PRO ASN SEQRES 7 A 237 ILE ASN SER ASN GLY SER ILE CYS LEU ASP ILE LEU ARG SEQRES 8 A 237 SER GLN TRP SER PRO ALA LEU THR ILE SER LYS VAL LEU SEQRES 9 A 237 LEU SER ILE CYS SER LEU LEU CYS ASP PRO ASN PRO ASP SEQRES 10 A 237 ASP PRO LEU VAL PRO GLU ILE ALA ARG ILE TYR LYS THR SEQRES 11 A 237 ASP ARG GLU LYS TYR ASN ARG ILE ALA ARG GLU TRP THR SEQRES 12 A 237 GLN LYS TYR ALA MET GLY GLY GLY SER GLY GLY GLY SER SEQRES 13 A 237 GLY GLY GLY SER GLY GLY GLY SER GLY GLY LYS ASP LYS SEQRES 14 A 237 ASP ASN THR ASN VAL ASN ALA ASP VAL GLN LYS LEU GLN SEQRES 15 A 237 GLN GLN LEU GLN ASP ILE LYS GLU GLN THR MET CYS PRO SEQRES 16 A 237 VAL CYS LEU ASP ARG LEU LYS ASN MET ILE PHE LEU CYS SEQRES 17 A 237 GLY HIS GLY THR CYS GLN LEU CYS GLY ASP ARG MET SER SEQRES 18 A 237 GLU CYS PRO ILE CYS ARG LYS ALA ILE GLU ARG ARG ILE SEQRES 19 A 237 LEU LEU TYR HET ZN B1101 1 HET ZN B1102 1 HET ZN A1101 1 HET ZN A1102 1 HET ZN A1103 1 HETNAM ZN ZINC ION FORMUL 3 ZN 5(ZN 2+) FORMUL 8 HOH *39(H2 O) HELIX 1 AA1 SER B 0 ASP B 16 1 17 HELIX 2 AA2 LEU B 86 ARG B 90 5 5 HELIX 3 AA3 THR B 98 ASP B 112 1 15 HELIX 4 AA4 VAL B 120 ASP B 130 1 11 HELIX 5 AA5 ASP B 130 ALA B 146 1 17 HELIX 6 AA6 ASN B 944 MET B 962 1 19 HELIX 7 AA7 CYS B 982 ASP B 987 1 6 HELIX 8 AA8 MET A 1 ASP A 16 1 16 HELIX 9 AA9 LEU A 86 ARG A 90 5 5 HELIX 10 AB1 THR A 98 ASP A 112 1 15 HELIX 11 AB2 VAL A 120 ASP A 130 1 11 HELIX 12 AB3 ASP A 130 ALA A 146 1 17 HELIX 13 AB4 LYS A 949 GLN A 955 1 7 HELIX 14 AB5 ASP A 956 MET A 962 1 7 HELIX 15 AB6 CYS A 982 ASP A 987 1 6 SHEET 1 AA1 4 SER B 22 PRO B 25 0 SHEET 2 AA1 4 HIS B 32 MET B 38 -1 O GLN B 34 N GLY B 24 SHEET 3 AA1 4 VAL B 49 HIS B 55 -1 O PHE B 50 N ILE B 37 SHEET 4 AA1 4 LYS B 66 PHE B 69 -1 O LYS B 66 N HIS B 55 SHEET 1 AA2 3 GLY B 980 THR B 981 0 SHEET 2 AA2 3 MET B 973 PHE B 975 -1 N MET B 973 O THR B 981 SHEET 3 AA2 3 ARG B1002 LEU B1004 -1 O ILE B1003 N ILE B 974 SHEET 1 AA3 4 CYS A 21 PRO A 25 0 SHEET 2 AA3 4 HIS A 32 MET A 38 -1 O GLN A 34 N GLY A 24 SHEET 3 AA3 4 VAL A 49 HIS A 55 -1 O PHE A 50 N ILE A 37 SHEET 4 AA3 4 LYS A 66 PHE A 69 -1 O ALA A 68 N THR A 53 SHEET 1 AA4 3 GLY A 980 THR A 981 0 SHEET 2 AA4 3 MET A 973 ILE A 974 -1 N MET A 973 O THR A 981 SHEET 3 AA4 3 ILE A1003 LEU A1004 -1 O ILE A1003 N ILE A 974 LINK SG CYS B 963 ZN ZN B1101 1555 1555 2.33 LINK SG CYS B 966 ZN ZN B1101 1555 1555 2.33 LINK SG CYS B 977 ZN ZN B1102 1555 1555 2.33 LINK ND1 HIS B 979 ZN ZN B1102 1555 1555 2.05 LINK SG CYS B 982 ZN ZN B1101 1555 1555 2.34 LINK SG CYS B 985 ZN ZN B1101 1555 1555 2.33 LINK SG CYS B 992 ZN ZN B1102 1555 1555 2.33 LINK SG CYS B 995 ZN ZN B1102 1555 1555 2.32 LINK NE2 HIS A 32 ZN ZN A1103 1555 1555 2.28 LINK OD2 ASP A 42 ZN ZN A1103 1555 1455 2.15 LINK NE2 HIS A 55 ZN ZN A1103 1555 1555 2.35 LINK SG CYS A 111 ZN ZN A1103 1555 1455 2.32 LINK SG CYS A 963 ZN ZN A1101 1555 1555 2.34 LINK SG CYS A 966 ZN ZN A1101 1555 1555 2.35 LINK SG CYS A 977 ZN ZN A1102 1555 1555 2.28 LINK ND1 HIS A 979 ZN ZN A1102 1555 1555 2.10 LINK SG CYS A 982 ZN ZN A1101 1555 1555 2.32 LINK SG CYS A 985 ZN ZN A1101 1555 1555 2.33 LINK SG CYS A 992 ZN ZN A1102 1555 1555 2.30 LINK SG CYS A 995 ZN ZN A1102 1555 1555 2.32 CISPEP 1 TYR B 60 PRO B 61 0 3.30 CISPEP 2 TYR A 60 PRO A 61 0 4.73 CRYST1 28.985 65.119 135.931 90.00 93.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034501 0.000000 0.001826 0.00000 SCALE2 0.000000 0.015357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007367 0.00000