HEADER SIGNALING PROTEIN 19-NOV-23 8V14 TITLE STRUCTURE OF NRAP-1 AND ITS ROLE IN NMDAR SIGNALING COMPND MOL_ID: 1; COMPND 2 MOLECULE: NMDA RECEPTOR AUXILIARY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: NRAP-1; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 KEYWDS NMDAR, NRAP-1, SYNAPSE, POSTSYNAPTIC, NEUROTRANSMITTER, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.G.WHITBY,D.J.GOODELL,A.V.MARICQ,C.P.HILL REVDAT 3 13-NOV-24 8V14 1 REMARK REVDAT 2 21-AUG-24 8V14 1 JRNL REVDAT 1 31-JAN-24 8V14 0 JRNL AUTH D.J.GOODELL,F.G.WHITBY,J.E.MELLEM,N.LEI,P.J.BROCKIE, JRNL AUTH 2 A.J.MARICQ,D.M.ECKERT,C.P.HILL,D.M.MADSEN,A.V.MARICQ JRNL TITL MECHANISTIC AND STRUCTURAL STUDIES REVEAL NRAP-1-DEPENDENT JRNL TITL 2 COINCIDENT ACTIVATION OF NMDARS. JRNL REF CELL REP V. 43 13694 2024 JRNL REFN ESSN 2211-1247 JRNL PMID 38265937 JRNL DOI 10.1016/J.CELREP.2024.113694 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2675 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.43000 REMARK 3 B22 (A**2) : 1.70000 REMARK 3 B33 (A**2) : -3.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.106 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2626 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2359 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3562 ; 1.828 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5529 ; 1.453 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 7.561 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;35.066 ;24.634 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;18.018 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;21.440 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2998 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 510 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9639 37.5472 51.3507 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: 0.0945 REMARK 3 T33: 0.1445 T12: 0.0515 REMARK 3 T13: -0.0004 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 1.9135 L22: 2.0364 REMARK 3 L33: 4.9958 L12: -1.9091 REMARK 3 L13: -1.8637 L23: 2.2565 REMARK 3 S TENSOR REMARK 3 S11: 0.1190 S12: -0.0087 S13: -0.1556 REMARK 3 S21: -0.1114 S22: 0.0485 S23: 0.0266 REMARK 3 S31: 0.2345 S32: 0.5296 S33: -0.1676 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9788 31.1697 21.1738 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.0229 REMARK 3 T33: 0.0654 T12: -0.0002 REMARK 3 T13: 0.0196 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.4650 L22: 1.4809 REMARK 3 L33: 4.1049 L12: -0.7180 REMARK 3 L13: -0.7260 L23: 1.4770 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: -0.1189 S13: 0.2740 REMARK 3 S21: -0.1372 S22: 0.0426 S23: -0.0883 REMARK 3 S31: -0.6082 S32: 0.0733 S33: -0.1072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 8V14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000279324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.35 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38804 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 54.80 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 50.20 REMARK 200 R MERGE FOR SHELL (I) : 5.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17 MG/ML PURIFIED NRAP-1 IN 150 MM REMARK 280 SODIUM CHLORIDE, 15 MM HEPES, 1 MM CALCIUM CHLORIDE, PH 7.35, 1: REMARK 280 1 WITH CRYSTALLIZATION SOLUTION (26% PEG8000, 100 MM CHES, PH REMARK 280 9.8), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.67900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.19050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.96050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.19050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.67900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.96050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 140 CB - CA - C ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 3 -80.89 -54.65 REMARK 500 ARG A 4 -56.07 -29.73 REMARK 500 LYS A 10 124.58 -178.29 REMARK 500 ARG A 11 -102.54 -75.07 REMARK 500 ALA A 13 91.16 131.72 REMARK 500 ASP A 14 -169.87 -76.59 REMARK 500 ALA A 15 -93.23 -67.43 REMARK 500 ALA A 16 115.10 -20.63 REMARK 500 GLU A 145 -52.12 -120.78 REMARK 500 ASP B 14 -133.20 -151.83 REMARK 500 ALA B 15 -159.59 36.46 REMARK 500 ALA B 16 -67.14 101.00 REMARK 500 VAL B 64 -64.04 -25.30 REMARK 500 GLU B 145 -63.32 -105.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 16 THR A 17 132.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 37 O REMARK 620 2 ASP A 40 OD1 88.0 REMARK 620 3 SER A 42 O 171.2 85.1 REMARK 620 4 ASP A 44 OD2 92.5 105.4 84.0 REMARK 620 5 ASP A 50 OD2 96.2 175.7 90.8 75.5 REMARK 620 6 GLU A 51 OE2 97.3 83.7 87.5 166.9 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 37 O REMARK 620 2 ASP B 40 OD1 88.6 REMARK 620 3 SER B 42 O 172.2 85.8 REMARK 620 4 ASP B 44 OD2 92.1 103.6 84.1 REMARK 620 5 ASP B 50 OD2 96.1 168.5 90.5 86.8 REMARK 620 6 GLU B 51 OE2 98.7 78.0 85.3 169.1 90.8 REMARK 620 N 1 2 3 4 5 DBREF 8V14 A 1 167 UNP G5EEF9 G5EEF9_CAEEL 17 183 DBREF 8V14 B 1 167 UNP G5EEF9 G5EEF9_CAEEL 17 183 SEQADV 8V14 GLY A 0 UNP G5EEF9 EXPRESSION TAG SEQADV 8V14 GLY B 0 UNP G5EEF9 EXPRESSION TAG SEQRES 1 A 168 GLY PHE SER ILE ARG ASP ILE ILE ASN GLY LYS ARG GLY SEQRES 2 A 168 ALA ASP ALA ALA THR PRO CYS PRO THR TRP HIS PRO PHE SEQRES 3 A 168 ALA CYS PRO SER GLY GLU CYS VAL PRO ILE LYS TYR LEU SEQRES 4 A 168 CYS ASP GLY SER PRO ASP CYS SER ASP GLU TYR ASP GLU SEQRES 5 A 168 ASN LYS SER MET CYS THR ALA ALA THR ARG PRO PRO VAL SEQRES 6 A 168 GLU GLU THR GLN ALA PHE LEU LYS ALA LEU MET SER ALA SEQRES 7 A 168 HIS GLY LYS ASP PHE LEU VAL LYS VAL PHE GLY PRO LYS SEQRES 8 A 168 ALA LYS ALA GLU LEU SER GLY MET GLY GLY VAL ASP LYS SEQRES 9 A 168 VAL ALA VAL ALA LEU SER GLN THR PRO THR ALA ASP LEU SEQRES 10 A 168 PHE ALA SER GLU MET LYS LEU ASP ASP GLY GLU THR GLN SEQRES 11 A 168 HIS MET LEU GLU VAL MET GLU GLY ILE LEU ASN GLY SER SEQRES 12 A 168 THR ASP GLU LEU THR SER ASN GLU ALA ALA ASP PHE ARG SEQRES 13 A 168 PHE PHE VAL GLN LYS LEU GLN GLU THR GLY PHE PHE SEQRES 1 B 168 GLY PHE SER ILE ARG ASP ILE ILE ASN GLY LYS ARG GLY SEQRES 2 B 168 ALA ASP ALA ALA THR PRO CYS PRO THR TRP HIS PRO PHE SEQRES 3 B 168 ALA CYS PRO SER GLY GLU CYS VAL PRO ILE LYS TYR LEU SEQRES 4 B 168 CYS ASP GLY SER PRO ASP CYS SER ASP GLU TYR ASP GLU SEQRES 5 B 168 ASN LYS SER MET CYS THR ALA ALA THR ARG PRO PRO VAL SEQRES 6 B 168 GLU GLU THR GLN ALA PHE LEU LYS ALA LEU MET SER ALA SEQRES 7 B 168 HIS GLY LYS ASP PHE LEU VAL LYS VAL PHE GLY PRO LYS SEQRES 8 B 168 ALA LYS ALA GLU LEU SER GLY MET GLY GLY VAL ASP LYS SEQRES 9 B 168 VAL ALA VAL ALA LEU SER GLN THR PRO THR ALA ASP LEU SEQRES 10 B 168 PHE ALA SER GLU MET LYS LEU ASP ASP GLY GLU THR GLN SEQRES 11 B 168 HIS MET LEU GLU VAL MET GLU GLY ILE LEU ASN GLY SER SEQRES 12 B 168 THR ASP GLU LEU THR SER ASN GLU ALA ALA ASP PHE ARG SEQRES 13 B 168 PHE PHE VAL GLN LYS LEU GLN GLU THR GLY PHE PHE HET CA A 201 1 HET CA B 201 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *193(H2 O) HELIX 1 AA1 ILE A 3 ASN A 8 5 6 HELIX 2 AA2 PRO A 34 LEU A 38 5 5 HELIX 3 AA3 GLU A 48 GLU A 51 5 4 HELIX 4 AA4 ASN A 52 ARG A 61 1 10 HELIX 5 AA5 PRO A 63 GLY A 79 1 17 HELIX 6 AA6 LEU A 83 GLY A 88 1 6 HELIX 7 AA7 ALA A 91 SER A 96 1 6 HELIX 8 AA8 GLY A 99 THR A 111 1 13 HELIX 9 AA9 THR A 113 MET A 121 1 9 HELIX 10 AB1 ASP A 124 GLY A 141 1 18 HELIX 11 AB2 THR A 147 THR A 164 1 18 HELIX 12 AB3 SER B 2 ILE B 7 1 6 HELIX 13 AB4 PRO B 34 LEU B 38 5 5 HELIX 14 AB5 GLU B 48 GLU B 51 5 4 HELIX 15 AB6 ASN B 52 ARG B 61 1 10 HELIX 16 AB7 PRO B 63 GLY B 79 1 17 HELIX 17 AB8 LEU B 83 GLY B 88 1 6 HELIX 18 AB9 ALA B 91 SER B 96 1 6 HELIX 19 AC1 GLY B 99 THR B 111 1 13 HELIX 20 AC2 THR B 113 LYS B 122 1 10 HELIX 21 AC3 ASP B 124 GLY B 141 1 18 HELIX 22 AC4 THR B 147 THR B 164 1 18 SHEET 1 AA1 2 PHE A 25 ALA A 26 0 SHEET 2 AA1 2 CYS A 32 VAL A 33 -1 O VAL A 33 N PHE A 25 SHEET 1 AA2 2 PHE B 25 ALA B 26 0 SHEET 2 AA2 2 CYS B 32 VAL B 33 -1 O VAL B 33 N PHE B 25 SSBOND 1 CYS A 19 CYS A 32 1555 1555 2.10 SSBOND 2 CYS A 27 CYS A 45 1555 1555 2.00 SSBOND 3 CYS A 39 CYS A 56 1555 1555 2.18 SSBOND 4 CYS B 19 CYS B 32 1555 1555 2.12 SSBOND 5 CYS B 27 CYS B 45 1555 1555 2.02 SSBOND 6 CYS B 39 CYS B 56 1555 1555 2.16 LINK O TYR A 37 CA CA A 201 1555 1555 2.21 LINK OD1 ASP A 40 CA CA A 201 1555 1555 2.01 LINK O SER A 42 CA CA A 201 1555 1555 2.33 LINK OD2 ASP A 44 CA CA A 201 1555 1555 2.39 LINK OD2 ASP A 50 CA CA A 201 1555 1555 2.18 LINK OE2 GLU A 51 CA CA A 201 1555 1555 2.35 LINK O TYR B 37 CA CA B 201 1555 1555 2.29 LINK OD1 ASP B 40 CA CA B 201 1555 1555 2.13 LINK O SER B 42 CA CA B 201 1555 1555 2.36 LINK OD2 ASP B 44 CA CA B 201 1555 1555 2.42 LINK OD2 ASP B 50 CA CA B 201 1555 1555 2.09 LINK OE2 GLU B 51 CA CA B 201 1555 1555 2.36 CISPEP 1 ALA A 13 ASP A 14 0 15.38 CISPEP 2 ALA B 13 ASP B 14 0 10.63 CRYST1 41.358 75.921 152.381 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006562 0.00000 CONECT 139 238 CONECT 206 334 CONECT 238 139 CONECT 273 2565 CONECT 295 423 CONECT 302 2565 CONECT 311 2565 CONECT 328 2565 CONECT 334 206 CONECT 377 2565 CONECT 386 2565 CONECT 423 295 CONECT 1413 1512 CONECT 1480 1608 CONECT 1512 1413 CONECT 1547 2566 CONECT 1569 1697 CONECT 1576 2566 CONECT 1585 2566 CONECT 1602 2566 CONECT 1608 1480 CONECT 1651 2566 CONECT 1660 2566 CONECT 1697 1569 CONECT 2565 273 302 311 328 CONECT 2565 377 386 CONECT 2566 1547 1576 1585 1602 CONECT 2566 1651 1660 MASTER 369 0 2 22 4 0 0 6 2723 2 28 26 END