data_8V1N # _entry.id 8V1N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8V1N pdb_00008v1n 10.2210/pdb8v1n/pdb WWPDB D_1000279175 ? ? EMDB EMD-42886 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2024-12-11 ? 2 'Structure model' 1 1 2025-06-25 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8V1N _pdbx_database_status.recvd_initial_deposition_date 2023-11-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of tau filaments made from jR2R3-P301L peptides induced with heparin' _pdbx_database_related.db_id EMD-42886 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email songi.han@northwestern.edu _pdbx_contact_author.name_first Songi _pdbx_contact_author.name_last Han _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6489-6246 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vigers, M.' 1 0000-0002-5685-6153 'Han, S.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 122 _citation.language ? _citation.page_first e2421391122 _citation.page_last e2421391122 _citation.title 'Water-directed pinning is key to tau prion formation.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2421391122 _citation.pdbx_database_id_PubMed 40294272 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vigers, M.P.' 1 0000-0002-5685-6153 primary 'Lobo, S.' 2 0000-0002-1162-8798 primary 'Najafi, S.' 3 ? primary 'Dubose, A.' 4 0009-0001-3844-2539 primary 'Tsay, K.' 5 ? primary 'Ganguly, P.' 6 ? primary 'Longhini, A.P.' 7 ? primary 'Jin, Y.' 8 0000-0002-8264-1391 primary 'Buratto, S.K.' 9 ? primary 'Kosik, K.S.' 10 ? primary 'Shell, M.S.' 11 ? primary 'Shea, J.E.' 12 ? primary 'Han, S.' 13 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Microtubule-associated protein tau' _entity.formula_weight 2026.359 _entity.pdbx_number_of_molecules 12 _entity.pdbx_ec ? _entity.pdbx_mutation P618L _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurofibrillary tangle protein,Paired helical filament-tau,PHF-tau' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DNIKHVLGGGSVQIVYKPV _entity_poly.pdbx_seq_one_letter_code_can DNIKHVLGGGSVQIVYKPV _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K,L _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ASN n 1 3 ILE n 1 4 LYS n 1 5 HIS n 1 6 VAL n 1 7 LEU n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 SER n 1 12 VAL n 1 13 GLN n 1 14 ILE n 1 15 VAL n 1 16 TYR n 1 17 LYS n 1 18 PRO n 1 19 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 19 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 HIS 5 5 5 HIS HIS A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 PRO 18 18 ? ? ? A . n A 1 19 VAL 19 19 ? ? ? A . n B 1 1 ASP 1 1 ? ? ? B . n B 1 2 ASN 2 2 ? ? ? B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 HIS 5 5 5 HIS HIS B . n B 1 6 VAL 6 6 6 VAL VAL B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 GLN 13 13 13 GLN GLN B . n B 1 14 ILE 14 14 14 ILE ILE B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 TYR 16 16 16 TYR TYR B . n B 1 17 LYS 17 17 17 LYS LYS B . n B 1 18 PRO 18 18 ? ? ? B . n B 1 19 VAL 19 19 ? ? ? B . n C 1 1 ASP 1 1 1 ASP ASP C . n C 1 2 ASN 2 2 2 ASN ASN C . n C 1 3 ILE 3 3 3 ILE ILE C . n C 1 4 LYS 4 4 4 LYS LYS C . n C 1 5 HIS 5 5 5 HIS HIS C . n C 1 6 VAL 6 6 6 VAL VAL C . n C 1 7 LEU 7 7 7 LEU LEU C . n C 1 8 GLY 8 8 8 GLY GLY C . n C 1 9 GLY 9 9 9 GLY GLY C . n C 1 10 GLY 10 10 10 GLY GLY C . n C 1 11 SER 11 11 11 SER SER C . n C 1 12 VAL 12 12 12 VAL VAL C . n C 1 13 GLN 13 13 13 GLN GLN C . n C 1 14 ILE 14 14 14 ILE ILE C . n C 1 15 VAL 15 15 15 VAL VAL C . n C 1 16 TYR 16 16 16 TYR TYR C . n C 1 17 LYS 17 17 17 LYS LYS C . n C 1 18 PRO 18 18 ? ? ? C . n C 1 19 VAL 19 19 ? ? ? C . n D 1 1 ASP 1 1 ? ? ? D . n D 1 2 ASN 2 2 ? ? ? D . n D 1 3 ILE 3 3 3 ILE ILE D . n D 1 4 LYS 4 4 4 LYS LYS D . n D 1 5 HIS 5 5 5 HIS HIS D . n D 1 6 VAL 6 6 6 VAL VAL D . n D 1 7 LEU 7 7 7 LEU LEU D . n D 1 8 GLY 8 8 8 GLY GLY D . n D 1 9 GLY 9 9 9 GLY GLY D . n D 1 10 GLY 10 10 10 GLY GLY D . n D 1 11 SER 11 11 11 SER SER D . n D 1 12 VAL 12 12 12 VAL VAL D . n D 1 13 GLN 13 13 13 GLN GLN D . n D 1 14 ILE 14 14 14 ILE ILE D . n D 1 15 VAL 15 15 15 VAL VAL D . n D 1 16 TYR 16 16 16 TYR TYR D . n D 1 17 LYS 17 17 17 LYS LYS D . n D 1 18 PRO 18 18 ? ? ? D . n D 1 19 VAL 19 19 ? ? ? D . n E 1 1 ASP 1 1 1 ASP ASP E . n E 1 2 ASN 2 2 2 ASN ASN E . n E 1 3 ILE 3 3 3 ILE ILE E . n E 1 4 LYS 4 4 4 LYS LYS E . n E 1 5 HIS 5 5 5 HIS HIS E . n E 1 6 VAL 6 6 6 VAL VAL E . n E 1 7 LEU 7 7 7 LEU LEU E . n E 1 8 GLY 8 8 8 GLY GLY E . n E 1 9 GLY 9 9 9 GLY GLY E . n E 1 10 GLY 10 10 10 GLY GLY E . n E 1 11 SER 11 11 11 SER SER E . n E 1 12 VAL 12 12 12 VAL VAL E . n E 1 13 GLN 13 13 13 GLN GLN E . n E 1 14 ILE 14 14 14 ILE ILE E . n E 1 15 VAL 15 15 15 VAL VAL E . n E 1 16 TYR 16 16 16 TYR TYR E . n E 1 17 LYS 17 17 17 LYS LYS E . n E 1 18 PRO 18 18 ? ? ? E . n E 1 19 VAL 19 19 ? ? ? E . n F 1 1 ASP 1 1 ? ? ? F . n F 1 2 ASN 2 2 ? ? ? F . n F 1 3 ILE 3 3 3 ILE ILE F . n F 1 4 LYS 4 4 4 LYS LYS F . n F 1 5 HIS 5 5 5 HIS HIS F . n F 1 6 VAL 6 6 6 VAL VAL F . n F 1 7 LEU 7 7 7 LEU LEU F . n F 1 8 GLY 8 8 8 GLY GLY F . n F 1 9 GLY 9 9 9 GLY GLY F . n F 1 10 GLY 10 10 10 GLY GLY F . n F 1 11 SER 11 11 11 SER SER F . n F 1 12 VAL 12 12 12 VAL VAL F . n F 1 13 GLN 13 13 13 GLN GLN F . n F 1 14 ILE 14 14 14 ILE ILE F . n F 1 15 VAL 15 15 15 VAL VAL F . n F 1 16 TYR 16 16 16 TYR TYR F . n F 1 17 LYS 17 17 17 LYS LYS F . n F 1 18 PRO 18 18 ? ? ? F . n F 1 19 VAL 19 19 ? ? ? F . n G 1 1 ASP 1 1 1 ASP ASP G . n G 1 2 ASN 2 2 2 ASN ASN G . n G 1 3 ILE 3 3 3 ILE ILE G . n G 1 4 LYS 4 4 4 LYS LYS G . n G 1 5 HIS 5 5 5 HIS HIS G . n G 1 6 VAL 6 6 6 VAL VAL G . n G 1 7 LEU 7 7 7 LEU LEU G . n G 1 8 GLY 8 8 8 GLY GLY G . n G 1 9 GLY 9 9 9 GLY GLY G . n G 1 10 GLY 10 10 10 GLY GLY G . n G 1 11 SER 11 11 11 SER SER G . n G 1 12 VAL 12 12 12 VAL VAL G . n G 1 13 GLN 13 13 13 GLN GLN G . n G 1 14 ILE 14 14 14 ILE ILE G . n G 1 15 VAL 15 15 15 VAL VAL G . n G 1 16 TYR 16 16 16 TYR TYR G . n G 1 17 LYS 17 17 17 LYS LYS G . n G 1 18 PRO 18 18 ? ? ? G . n G 1 19 VAL 19 19 ? ? ? G . n H 1 1 ASP 1 1 ? ? ? H . n H 1 2 ASN 2 2 ? ? ? H . n H 1 3 ILE 3 3 3 ILE ILE H . n H 1 4 LYS 4 4 4 LYS LYS H . n H 1 5 HIS 5 5 5 HIS HIS H . n H 1 6 VAL 6 6 6 VAL VAL H . n H 1 7 LEU 7 7 7 LEU LEU H . n H 1 8 GLY 8 8 8 GLY GLY H . n H 1 9 GLY 9 9 9 GLY GLY H . n H 1 10 GLY 10 10 10 GLY GLY H . n H 1 11 SER 11 11 11 SER SER H . n H 1 12 VAL 12 12 12 VAL VAL H . n H 1 13 GLN 13 13 13 GLN GLN H . n H 1 14 ILE 14 14 14 ILE ILE H . n H 1 15 VAL 15 15 15 VAL VAL H . n H 1 16 TYR 16 16 16 TYR TYR H . n H 1 17 LYS 17 17 17 LYS LYS H . n H 1 18 PRO 18 18 ? ? ? H . n H 1 19 VAL 19 19 ? ? ? H . n I 1 1 ASP 1 1 1 ASP ASP I . n I 1 2 ASN 2 2 2 ASN ASN I . n I 1 3 ILE 3 3 3 ILE ILE I . n I 1 4 LYS 4 4 4 LYS LYS I . n I 1 5 HIS 5 5 5 HIS HIS I . n I 1 6 VAL 6 6 6 VAL VAL I . n I 1 7 LEU 7 7 7 LEU LEU I . n I 1 8 GLY 8 8 8 GLY GLY I . n I 1 9 GLY 9 9 9 GLY GLY I . n I 1 10 GLY 10 10 10 GLY GLY I . n I 1 11 SER 11 11 11 SER SER I . n I 1 12 VAL 12 12 12 VAL VAL I . n I 1 13 GLN 13 13 13 GLN GLN I . n I 1 14 ILE 14 14 14 ILE ILE I . n I 1 15 VAL 15 15 15 VAL VAL I . n I 1 16 TYR 16 16 16 TYR TYR I . n I 1 17 LYS 17 17 17 LYS LYS I . n I 1 18 PRO 18 18 ? ? ? I . n I 1 19 VAL 19 19 ? ? ? I . n J 1 1 ASP 1 1 ? ? ? J . n J 1 2 ASN 2 2 ? ? ? J . n J 1 3 ILE 3 3 3 ILE ILE J . n J 1 4 LYS 4 4 4 LYS LYS J . n J 1 5 HIS 5 5 5 HIS HIS J . n J 1 6 VAL 6 6 6 VAL VAL J . n J 1 7 LEU 7 7 7 LEU LEU J . n J 1 8 GLY 8 8 8 GLY GLY J . n J 1 9 GLY 9 9 9 GLY GLY J . n J 1 10 GLY 10 10 10 GLY GLY J . n J 1 11 SER 11 11 11 SER SER J . n J 1 12 VAL 12 12 12 VAL VAL J . n J 1 13 GLN 13 13 13 GLN GLN J . n J 1 14 ILE 14 14 14 ILE ILE J . n J 1 15 VAL 15 15 15 VAL VAL J . n J 1 16 TYR 16 16 16 TYR TYR J . n J 1 17 LYS 17 17 17 LYS LYS J . n J 1 18 PRO 18 18 ? ? ? J . n J 1 19 VAL 19 19 ? ? ? J . n K 1 1 ASP 1 1 1 ASP ASP K . n K 1 2 ASN 2 2 2 ASN ASN K . n K 1 3 ILE 3 3 3 ILE ILE K . n K 1 4 LYS 4 4 4 LYS LYS K . n K 1 5 HIS 5 5 5 HIS HIS K . n K 1 6 VAL 6 6 6 VAL VAL K . n K 1 7 LEU 7 7 7 LEU LEU K . n K 1 8 GLY 8 8 8 GLY GLY K . n K 1 9 GLY 9 9 9 GLY GLY K . n K 1 10 GLY 10 10 10 GLY GLY K . n K 1 11 SER 11 11 11 SER SER K . n K 1 12 VAL 12 12 12 VAL VAL K . n K 1 13 GLN 13 13 13 GLN GLN K . n K 1 14 ILE 14 14 14 ILE ILE K . n K 1 15 VAL 15 15 15 VAL VAL K . n K 1 16 TYR 16 16 16 TYR TYR K . n K 1 17 LYS 17 17 17 LYS LYS K . n K 1 18 PRO 18 18 ? ? ? K . n K 1 19 VAL 19 19 ? ? ? K . n L 1 1 ASP 1 1 ? ? ? L . n L 1 2 ASN 2 2 ? ? ? L . n L 1 3 ILE 3 3 3 ILE ILE L . n L 1 4 LYS 4 4 4 LYS LYS L . n L 1 5 HIS 5 5 5 HIS HIS L . n L 1 6 VAL 6 6 6 VAL VAL L . n L 1 7 LEU 7 7 7 LEU LEU L . n L 1 8 GLY 8 8 8 GLY GLY L . n L 1 9 GLY 9 9 9 GLY GLY L . n L 1 10 GLY 10 10 10 GLY GLY L . n L 1 11 SER 11 11 11 SER SER L . n L 1 12 VAL 12 12 12 VAL VAL L . n L 1 13 GLN 13 13 13 GLN GLN L . n L 1 14 ILE 14 14 14 ILE ILE L . n L 1 15 VAL 15 15 15 VAL VAL L . n L 1 16 TYR 16 16 16 TYR TYR L . n L 1 17 LYS 17 17 17 LYS LYS L . n L 1 18 PRO 18 18 ? ? ? L . n L 1 19 VAL 19 19 ? ? ? L . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8V1N _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8V1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8V1N _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8V1N _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _struct.entry_id 8V1N _struct.title 'Cryo-EM structure of tau filaments made from jR2R3-P301L peptides induced with heparin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8V1N _struct_keywords.text 'tau, amyloid, filament, P301L, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TAU_HUMAN _struct_ref.pdbx_db_accession P10636 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DNIKHVPGGGSVQIVYKPV _struct_ref.pdbx_align_begin 612 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8V1N A 1 ? 19 ? P10636 612 ? 630 ? 1 19 2 1 8V1N B 1 ? 19 ? P10636 612 ? 630 ? 1 19 3 1 8V1N C 1 ? 19 ? P10636 612 ? 630 ? 1 19 4 1 8V1N D 1 ? 19 ? P10636 612 ? 630 ? 1 19 5 1 8V1N E 1 ? 19 ? P10636 612 ? 630 ? 1 19 6 1 8V1N F 1 ? 19 ? P10636 612 ? 630 ? 1 19 7 1 8V1N G 1 ? 19 ? P10636 612 ? 630 ? 1 19 8 1 8V1N H 1 ? 19 ? P10636 612 ? 630 ? 1 19 9 1 8V1N I 1 ? 19 ? P10636 612 ? 630 ? 1 19 10 1 8V1N J 1 ? 19 ? P10636 612 ? 630 ? 1 19 11 1 8V1N K 1 ? 19 ? P10636 612 ? 630 ? 1 19 12 1 8V1N L 1 ? 19 ? P10636 612 ? 630 ? 1 19 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8V1N LEU A 7 ? UNP P10636 PRO 618 'engineered mutation' 7 1 2 8V1N LEU B 7 ? UNP P10636 PRO 618 'engineered mutation' 7 2 3 8V1N LEU C 7 ? UNP P10636 PRO 618 'engineered mutation' 7 3 4 8V1N LEU D 7 ? UNP P10636 PRO 618 'engineered mutation' 7 4 5 8V1N LEU E 7 ? UNP P10636 PRO 618 'engineered mutation' 7 5 6 8V1N LEU F 7 ? UNP P10636 PRO 618 'engineered mutation' 7 6 7 8V1N LEU G 7 ? UNP P10636 PRO 618 'engineered mutation' 7 7 8 8V1N LEU H 7 ? UNP P10636 PRO 618 'engineered mutation' 7 8 9 8V1N LEU I 7 ? UNP P10636 PRO 618 'engineered mutation' 7 9 10 8V1N LEU J 7 ? UNP P10636 PRO 618 'engineered mutation' 7 10 11 8V1N LEU K 7 ? UNP P10636 PRO 618 'engineered mutation' 7 11 12 8V1N LEU L 7 ? UNP P10636 PRO 618 'engineered mutation' 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE E 3 ? VAL E 6 ? ILE E 3 VAL E 6 AA1 2 ILE A 3 ? VAL A 6 ? ILE A 3 VAL A 6 AA1 3 ILE I 3 ? VAL I 6 ? ILE I 3 VAL I 6 AA2 1 SER E 11 ? VAL E 12 ? SER E 11 VAL E 12 AA2 2 SER A 11 ? VAL A 12 ? SER A 11 VAL A 12 AA2 3 SER I 11 ? VAL I 12 ? SER I 11 VAL I 12 AA3 1 LEU F 7 ? GLY F 8 ? LEU F 7 GLY F 8 AA3 2 LEU B 7 ? GLY B 8 ? LEU B 7 GLY B 8 AA3 3 LEU J 7 ? GLY J 8 ? LEU J 7 GLY J 8 AA4 1 VAL F 12 ? VAL F 15 ? VAL F 12 VAL F 15 AA4 2 VAL B 12 ? VAL B 15 ? VAL B 12 VAL B 15 AA4 3 VAL J 12 ? VAL J 15 ? VAL J 12 VAL J 15 AA5 1 ILE G 3 ? VAL G 6 ? ILE G 3 VAL G 6 AA5 2 ILE C 3 ? VAL C 6 ? ILE C 3 VAL C 6 AA5 3 ILE K 3 ? VAL K 6 ? ILE K 3 VAL K 6 AA6 1 SER G 11 ? VAL G 12 ? SER G 11 VAL G 12 AA6 2 SER C 11 ? VAL C 12 ? SER C 11 VAL C 12 AA6 3 SER K 11 ? VAL K 12 ? SER K 11 VAL K 12 AA7 1 LEU H 7 ? GLY H 8 ? LEU H 7 GLY H 8 AA7 2 LEU D 7 ? GLY D 8 ? LEU D 7 GLY D 8 AA7 3 LEU L 7 ? GLY L 8 ? LEU L 7 GLY L 8 AA8 1 VAL H 12 ? TYR H 16 ? VAL H 12 TYR H 16 AA8 2 VAL D 12 ? TYR D 16 ? VAL D 12 TYR D 16 AA8 3 VAL L 12 ? TYR L 16 ? VAL L 12 TYR L 16 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL E 6 ? O VAL E 6 N HIS A 5 ? N HIS A 5 AA1 2 3 N VAL A 6 ? N VAL A 6 O HIS I 5 ? O HIS I 5 AA2 1 2 O VAL E 12 ? O VAL E 12 N SER A 11 ? N SER A 11 AA2 2 3 N VAL A 12 ? N VAL A 12 O SER I 11 ? O SER I 11 AA3 1 2 O GLY F 8 ? O GLY F 8 N LEU B 7 ? N LEU B 7 AA3 2 3 N GLY B 8 ? N GLY B 8 O LEU J 7 ? O LEU J 7 AA4 1 2 O VAL F 15 ? O VAL F 15 N ILE B 14 ? N ILE B 14 AA4 2 3 N GLN B 13 ? N GLN B 13 O ILE J 14 ? O ILE J 14 AA5 1 2 O ILE G 3 ? O ILE G 3 N LYS C 4 ? N LYS C 4 AA5 2 3 N ILE C 3 ? N ILE C 3 O LYS K 4 ? O LYS K 4 AA6 1 2 O VAL G 12 ? O VAL G 12 N SER C 11 ? N SER C 11 AA6 2 3 N VAL C 12 ? N VAL C 12 O SER K 11 ? O SER K 11 AA7 1 2 O GLY H 8 ? O GLY H 8 N LEU D 7 ? N LEU D 7 AA7 2 3 N GLY D 8 ? N GLY D 8 O LEU L 7 ? O LEU L 7 AA8 1 2 O VAL H 15 ? O VAL H 15 N TYR D 16 ? N TYR D 16 AA8 2 3 N VAL D 15 ? N VAL D 15 O TYR L 16 ? O TYR L 16 # _pdbx_entry_details.entry_id 8V1N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8V1N _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8V1N _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.0 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 85235 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '20mM ammoniium acetate, 50mM NaCl' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type CELL _em_entity_assembly.name 'Filament of tau jR2R3-P301L peptide indued with heparin' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8V1N _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8V1N _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8V1N _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 18 ? A PRO 18 2 1 Y 1 A VAL 19 ? A VAL 19 3 1 Y 1 B ASP 1 ? B ASP 1 4 1 Y 1 B ASN 2 ? B ASN 2 5 1 Y 1 B PRO 18 ? B PRO 18 6 1 Y 1 B VAL 19 ? B VAL 19 7 1 Y 1 C PRO 18 ? C PRO 18 8 1 Y 1 C VAL 19 ? C VAL 19 9 1 Y 1 D ASP 1 ? D ASP 1 10 1 Y 1 D ASN 2 ? D ASN 2 11 1 Y 1 D PRO 18 ? D PRO 18 12 1 Y 1 D VAL 19 ? D VAL 19 13 1 Y 1 E PRO 18 ? E PRO 18 14 1 Y 1 E VAL 19 ? E VAL 19 15 1 Y 1 F ASP 1 ? F ASP 1 16 1 Y 1 F ASN 2 ? F ASN 2 17 1 Y 1 F PRO 18 ? F PRO 18 18 1 Y 1 F VAL 19 ? F VAL 19 19 1 Y 1 G PRO 18 ? G PRO 18 20 1 Y 1 G VAL 19 ? G VAL 19 21 1 Y 1 H ASP 1 ? H ASP 1 22 1 Y 1 H ASN 2 ? H ASN 2 23 1 Y 1 H PRO 18 ? H PRO 18 24 1 Y 1 H VAL 19 ? H VAL 19 25 1 Y 1 I PRO 18 ? I PRO 18 26 1 Y 1 I VAL 19 ? I VAL 19 27 1 Y 1 J ASP 1 ? J ASP 1 28 1 Y 1 J ASN 2 ? J ASN 2 29 1 Y 1 J PRO 18 ? J PRO 18 30 1 Y 1 J VAL 19 ? J VAL 19 31 1 Y 1 K PRO 18 ? K PRO 18 32 1 Y 1 K VAL 19 ? K VAL 19 33 1 Y 1 L ASP 1 ? L ASP 1 34 1 Y 1 L ASN 2 ? L ASN 2 35 1 Y 1 L PRO 18 ? L PRO 18 36 1 Y 1 L VAL 19 ? L VAL 19 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 GLN N N N N 34 GLN CA C N S 35 GLN C C N N 36 GLN O O N N 37 GLN CB C N N 38 GLN CG C N N 39 GLN CD C N N 40 GLN OE1 O N N 41 GLN NE2 N N N 42 GLN OXT O N N 43 GLN H H N N 44 GLN H2 H N N 45 GLN HA H N N 46 GLN HB2 H N N 47 GLN HB3 H N N 48 GLN HG2 H N N 49 GLN HG3 H N N 50 GLN HE21 H N N 51 GLN HE22 H N N 52 GLN HXT H N N 53 GLY N N N N 54 GLY CA C N N 55 GLY C C N N 56 GLY O O N N 57 GLY OXT O N N 58 GLY H H N N 59 GLY H2 H N N 60 GLY HA2 H N N 61 GLY HA3 H N N 62 GLY HXT H N N 63 HIS N N N N 64 HIS CA C N S 65 HIS C C N N 66 HIS O O N N 67 HIS CB C N N 68 HIS CG C Y N 69 HIS ND1 N Y N 70 HIS CD2 C Y N 71 HIS CE1 C Y N 72 HIS NE2 N Y N 73 HIS OXT O N N 74 HIS H H N N 75 HIS H2 H N N 76 HIS HA H N N 77 HIS HB2 H N N 78 HIS HB3 H N N 79 HIS HD1 H N N 80 HIS HD2 H N N 81 HIS HE1 H N N 82 HIS HE2 H N N 83 HIS HXT H N N 84 ILE N N N N 85 ILE CA C N S 86 ILE C C N N 87 ILE O O N N 88 ILE CB C N S 89 ILE CG1 C N N 90 ILE CG2 C N N 91 ILE CD1 C N N 92 ILE OXT O N N 93 ILE H H N N 94 ILE H2 H N N 95 ILE HA H N N 96 ILE HB H N N 97 ILE HG12 H N N 98 ILE HG13 H N N 99 ILE HG21 H N N 100 ILE HG22 H N N 101 ILE HG23 H N N 102 ILE HD11 H N N 103 ILE HD12 H N N 104 ILE HD13 H N N 105 ILE HXT H N N 106 LEU N N N N 107 LEU CA C N S 108 LEU C C N N 109 LEU O O N N 110 LEU CB C N N 111 LEU CG C N N 112 LEU CD1 C N N 113 LEU CD2 C N N 114 LEU OXT O N N 115 LEU H H N N 116 LEU H2 H N N 117 LEU HA H N N 118 LEU HB2 H N N 119 LEU HB3 H N N 120 LEU HG H N N 121 LEU HD11 H N N 122 LEU HD12 H N N 123 LEU HD13 H N N 124 LEU HD21 H N N 125 LEU HD22 H N N 126 LEU HD23 H N N 127 LEU HXT H N N 128 LYS N N N N 129 LYS CA C N S 130 LYS C C N N 131 LYS O O N N 132 LYS CB C N N 133 LYS CG C N N 134 LYS CD C N N 135 LYS CE C N N 136 LYS NZ N N N 137 LYS OXT O N N 138 LYS H H N N 139 LYS H2 H N N 140 LYS HA H N N 141 LYS HB2 H N N 142 LYS HB3 H N N 143 LYS HG2 H N N 144 LYS HG3 H N N 145 LYS HD2 H N N 146 LYS HD3 H N N 147 LYS HE2 H N N 148 LYS HE3 H N N 149 LYS HZ1 H N N 150 LYS HZ2 H N N 151 LYS HZ3 H N N 152 LYS HXT H N N 153 PRO N N N N 154 PRO CA C N S 155 PRO C C N N 156 PRO O O N N 157 PRO CB C N N 158 PRO CG C N N 159 PRO CD C N N 160 PRO OXT O N N 161 PRO H H N N 162 PRO HA H N N 163 PRO HB2 H N N 164 PRO HB3 H N N 165 PRO HG2 H N N 166 PRO HG3 H N N 167 PRO HD2 H N N 168 PRO HD3 H N N 169 PRO HXT H N N 170 SER N N N N 171 SER CA C N S 172 SER C C N N 173 SER O O N N 174 SER CB C N N 175 SER OG O N N 176 SER OXT O N N 177 SER H H N N 178 SER H2 H N N 179 SER HA H N N 180 SER HB2 H N N 181 SER HB3 H N N 182 SER HG H N N 183 SER HXT H N N 184 TYR N N N N 185 TYR CA C N S 186 TYR C C N N 187 TYR O O N N 188 TYR CB C N N 189 TYR CG C Y N 190 TYR CD1 C Y N 191 TYR CD2 C Y N 192 TYR CE1 C Y N 193 TYR CE2 C Y N 194 TYR CZ C Y N 195 TYR OH O N N 196 TYR OXT O N N 197 TYR H H N N 198 TYR H2 H N N 199 TYR HA H N N 200 TYR HB2 H N N 201 TYR HB3 H N N 202 TYR HD1 H N N 203 TYR HD2 H N N 204 TYR HE1 H N N 205 TYR HE2 H N N 206 TYR HH H N N 207 TYR HXT H N N 208 VAL N N N N 209 VAL CA C N S 210 VAL C C N N 211 VAL O O N N 212 VAL CB C N N 213 VAL CG1 C N N 214 VAL CG2 C N N 215 VAL OXT O N N 216 VAL H H N N 217 VAL H2 H N N 218 VAL HA H N N 219 VAL HB H N N 220 VAL HG11 H N N 221 VAL HG12 H N N 222 VAL HG13 H N N 223 VAL HG21 H N N 224 VAL HG22 H N N 225 VAL HG23 H N N 226 VAL HXT H N N 227 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 GLN N CA sing N N 32 GLN N H sing N N 33 GLN N H2 sing N N 34 GLN CA C sing N N 35 GLN CA CB sing N N 36 GLN CA HA sing N N 37 GLN C O doub N N 38 GLN C OXT sing N N 39 GLN CB CG sing N N 40 GLN CB HB2 sing N N 41 GLN CB HB3 sing N N 42 GLN CG CD sing N N 43 GLN CG HG2 sing N N 44 GLN CG HG3 sing N N 45 GLN CD OE1 doub N N 46 GLN CD NE2 sing N N 47 GLN NE2 HE21 sing N N 48 GLN NE2 HE22 sing N N 49 GLN OXT HXT sing N N 50 GLY N CA sing N N 51 GLY N H sing N N 52 GLY N H2 sing N N 53 GLY CA C sing N N 54 GLY CA HA2 sing N N 55 GLY CA HA3 sing N N 56 GLY C O doub N N 57 GLY C OXT sing N N 58 GLY OXT HXT sing N N 59 HIS N CA sing N N 60 HIS N H sing N N 61 HIS N H2 sing N N 62 HIS CA C sing N N 63 HIS CA CB sing N N 64 HIS CA HA sing N N 65 HIS C O doub N N 66 HIS C OXT sing N N 67 HIS CB CG sing N N 68 HIS CB HB2 sing N N 69 HIS CB HB3 sing N N 70 HIS CG ND1 sing Y N 71 HIS CG CD2 doub Y N 72 HIS ND1 CE1 doub Y N 73 HIS ND1 HD1 sing N N 74 HIS CD2 NE2 sing Y N 75 HIS CD2 HD2 sing N N 76 HIS CE1 NE2 sing Y N 77 HIS CE1 HE1 sing N N 78 HIS NE2 HE2 sing N N 79 HIS OXT HXT sing N N 80 ILE N CA sing N N 81 ILE N H sing N N 82 ILE N H2 sing N N 83 ILE CA C sing N N 84 ILE CA CB sing N N 85 ILE CA HA sing N N 86 ILE C O doub N N 87 ILE C OXT sing N N 88 ILE CB CG1 sing N N 89 ILE CB CG2 sing N N 90 ILE CB HB sing N N 91 ILE CG1 CD1 sing N N 92 ILE CG1 HG12 sing N N 93 ILE CG1 HG13 sing N N 94 ILE CG2 HG21 sing N N 95 ILE CG2 HG22 sing N N 96 ILE CG2 HG23 sing N N 97 ILE CD1 HD11 sing N N 98 ILE CD1 HD12 sing N N 99 ILE CD1 HD13 sing N N 100 ILE OXT HXT sing N N 101 LEU N CA sing N N 102 LEU N H sing N N 103 LEU N H2 sing N N 104 LEU CA C sing N N 105 LEU CA CB sing N N 106 LEU CA HA sing N N 107 LEU C O doub N N 108 LEU C OXT sing N N 109 LEU CB CG sing N N 110 LEU CB HB2 sing N N 111 LEU CB HB3 sing N N 112 LEU CG CD1 sing N N 113 LEU CG CD2 sing N N 114 LEU CG HG sing N N 115 LEU CD1 HD11 sing N N 116 LEU CD1 HD12 sing N N 117 LEU CD1 HD13 sing N N 118 LEU CD2 HD21 sing N N 119 LEU CD2 HD22 sing N N 120 LEU CD2 HD23 sing N N 121 LEU OXT HXT sing N N 122 LYS N CA sing N N 123 LYS N H sing N N 124 LYS N H2 sing N N 125 LYS CA C sing N N 126 LYS CA CB sing N N 127 LYS CA HA sing N N 128 LYS C O doub N N 129 LYS C OXT sing N N 130 LYS CB CG sing N N 131 LYS CB HB2 sing N N 132 LYS CB HB3 sing N N 133 LYS CG CD sing N N 134 LYS CG HG2 sing N N 135 LYS CG HG3 sing N N 136 LYS CD CE sing N N 137 LYS CD HD2 sing N N 138 LYS CD HD3 sing N N 139 LYS CE NZ sing N N 140 LYS CE HE2 sing N N 141 LYS CE HE3 sing N N 142 LYS NZ HZ1 sing N N 143 LYS NZ HZ2 sing N N 144 LYS NZ HZ3 sing N N 145 LYS OXT HXT sing N N 146 PRO N CA sing N N 147 PRO N CD sing N N 148 PRO N H sing N N 149 PRO CA C sing N N 150 PRO CA CB sing N N 151 PRO CA HA sing N N 152 PRO C O doub N N 153 PRO C OXT sing N N 154 PRO CB CG sing N N 155 PRO CB HB2 sing N N 156 PRO CB HB3 sing N N 157 PRO CG CD sing N N 158 PRO CG HG2 sing N N 159 PRO CG HG3 sing N N 160 PRO CD HD2 sing N N 161 PRO CD HD3 sing N N 162 PRO OXT HXT sing N N 163 SER N CA sing N N 164 SER N H sing N N 165 SER N H2 sing N N 166 SER CA C sing N N 167 SER CA CB sing N N 168 SER CA HA sing N N 169 SER C O doub N N 170 SER C OXT sing N N 171 SER CB OG sing N N 172 SER CB HB2 sing N N 173 SER CB HB3 sing N N 174 SER OG HG sing N N 175 SER OXT HXT sing N N 176 TYR N CA sing N N 177 TYR N H sing N N 178 TYR N H2 sing N N 179 TYR CA C sing N N 180 TYR CA CB sing N N 181 TYR CA HA sing N N 182 TYR C O doub N N 183 TYR C OXT sing N N 184 TYR CB CG sing N N 185 TYR CB HB2 sing N N 186 TYR CB HB3 sing N N 187 TYR CG CD1 doub Y N 188 TYR CG CD2 sing Y N 189 TYR CD1 CE1 sing Y N 190 TYR CD1 HD1 sing N N 191 TYR CD2 CE2 doub Y N 192 TYR CD2 HD2 sing N N 193 TYR CE1 CZ doub Y N 194 TYR CE1 HE1 sing N N 195 TYR CE2 CZ sing Y N 196 TYR CE2 HE2 sing N N 197 TYR CZ OH sing N N 198 TYR OH HH sing N N 199 TYR OXT HXT sing N N 200 VAL N CA sing N N 201 VAL N H sing N N 202 VAL N H2 sing N N 203 VAL CA C sing N N 204 VAL CA CB sing N N 205 VAL CA HA sing N N 206 VAL C O doub N N 207 VAL C OXT sing N N 208 VAL CB CG1 sing N N 209 VAL CB CG2 sing N N 210 VAL CB HB sing N N 211 VAL CG1 HG11 sing N N 212 VAL CG1 HG12 sing N N 213 VAL CG1 HG13 sing N N 214 VAL CG2 HG21 sing N N 215 VAL CG2 HG22 sing N N 216 VAL CG2 HG23 sing N N 217 VAL OXT HXT sing N N 218 # _em_admin.current_status REL _em_admin.deposition_date 2023-11-20 _em_admin.deposition_site RCSB _em_admin.entry_id 8V1N _em_admin.last_update 2025-06-25 _em_admin.map_release_date 2024-12-11 _em_admin.title 'Cryo-EM structure of tau filaments made from jR2R3-P301L peptides induced with heparin' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 50 mM NaCl 1 'sodium chloride' 1 20 mM NH4COOH 2 'ammonium acetate' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.43 _em_helical_entity.axial_rise_per_subunit 2.39 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 3.129 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50.0 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' 'filaments were selected manually' 1 1 ? ? RELION 4.0 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 4.0 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM136411 1 'National Institutes of Health/Office of the Director' 'United States' U24GM129547 2 # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 8V1N _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #