HEADER ANTIBIOTIC 28-NOV-23 8V4B TITLE NMR STRUCTURE OF A SYNTHETIC ANALOGUE OF RAMOPLANIN A2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAMOPLANIN A2 SYNTHETIC ANALOGUE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ACTINOPLANES; SOURCE 4 ORGANISM_TAXID: 1865 KEYWDS ANTIBIOTIC PEPTIDE, SYNTHETIC PEPTIDE, RAMOPLANIN A2, NON RIBOSOMAL KEYWDS 2 PEPTIDE, ARYLGLYCINE, SOLID PHASE PEPTIDE SYNTHESIS, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.D.SWARBRICK,E.A.MARSCHALL,M.J.CRYLE,J.TAILHADES REVDAT 2 23-APR-25 8V4B 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQRES SHEET LINK ATOM REVDAT 1 16-APR-25 8V4B 0 JRNL AUTH E.MARSCHALL,R.W.CASS,K.M.PRASAD,J.D.SWARBRICK,A.I.MCKAY, JRNL AUTH 2 J.A.E.PAYNE,M.J.CRYLE,J.TAILHADES JRNL TITL SYNTHETIC RAMOPLANIN ANALOGUES ARE ACCESSIBLE BY EFFECTIVE JRNL TITL 2 INCORPORATION OF ARYLGLYCINES IN SOLID-PHASE PEPTIDE JRNL TITL 3 SYNTHESIS. JRNL REF CHEM SCI V. 15 195 2023 JRNL REFN ISSN 2041-6520 JRNL PMID 38131086 JRNL DOI 10.1039/D3SC01944F REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.97 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8V4B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1000278694. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313; 298; 288 REMARK 210 PH : 4.5; 4.5; 4.5 REMARK 210 IONIC STRENGTH : 10; 10; 10 REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 4 MM PEPTIDE, 10 MM D3 ACETATE REMARK 210 BUFFER, 80% H2O / 20% DMSO(D6) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY 250-450MS; 2D 1H REMARK 210 -1H NOESY 250-350MS; 2D 1H-1H REMARK 210 TOCSY 70MS; 2D 1H-13C HSQC; 2D REMARK 210 13C H2BC; 2D 13C HMBC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, NMRFAM-SPARKY, CYANA 3.97 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GHP A 8 178.43 -178.63 REMARK 500 2 GHP A 8 178.52 -178.34 REMARK 500 3 GHP A 8 177.40 -178.54 REMARK 500 4 GHP A 8 178.22 -178.23 REMARK 500 5 GHP A 8 177.10 -178.50 REMARK 500 6 GHP A 8 176.26 -178.02 REMARK 500 7 GHP A 8 -179.57 -179.18 REMARK 500 8 GHP A 8 -179.53 -179.11 REMARK 500 9 GHP A 8 179.59 -179.23 REMARK 500 10 GHP A 8 -179.74 -178.75 REMARK 500 11 GHP A 8 -179.65 -179.14 REMARK 500 12 GHP A 8 175.89 -178.37 REMARK 500 13 GHP A 8 179.45 -178.73 REMARK 500 14 GHP A 8 176.57 -177.62 REMARK 500 15 GHP A 8 179.93 -178.87 REMARK 500 16 GHP A 8 179.78 -179.20 REMARK 500 16 DAL A 17 -49.57 86.96 REMARK 500 17 GHP A 8 176.77 -178.23 REMARK 500 18 DPP A 3 171.15 -57.75 REMARK 500 18 GHP A 8 177.66 -178.29 REMARK 500 19 GHP A 8 177.00 -178.60 REMARK 500 19 DAL A 17 -44.50 90.30 REMARK 500 20 GHP A 8 175.54 -177.68 REMARK 500 20 DAL A 17 -43.53 90.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 52188 RELATED DB: BMRB DBREF 8V4B A 2 18 PDB 8V4B 8V4B 2 18 SEQRES 1 A 17 ASN DPP GHP ORD DTH D4P GHP THR PHE ORD D4P DTH D4P SEQRES 2 A 17 GLY LEU DAL D4P HET DPP A 3 11 HET GHP A 4 18 HET ORD A 5 19 HET DTH A 6 14 HET D4P A 7 17 HET GHP A 8 18 HET ORD A 11 19 HET D4P A 12 17 HET DTH A 13 14 HET D4P A 14 17 HET DAL A 17 10 HET D4P A 18 17 HET 6NA A 101 18 HETNAM DPP DIAMINOPROPANOIC ACID HETNAM GHP (2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID HETNAM ORD D-ORNITHINE HETNAM DTH D-THREONINE HETNAM D4P (2S)-AMINO(4-HYDROXYPHENYL)ACETIC ACID HETNAM DAL D-ALANINE HETNAM 6NA HEXANOIC ACID FORMUL 1 DPP C3 H8 N2 O2 FORMUL 1 GHP 2(C8 H9 N O3) FORMUL 1 ORD 2(C5 H12 N2 O2) FORMUL 1 DTH 2(C4 H9 N O3) FORMUL 1 D4P 4(C8 H9 N O3) FORMUL 1 DAL C3 H7 N O2 FORMUL 2 6NA C6 H12 O2 SHEET 1 AA1 2 DPP A 3 GHP A 8 0 SHEET 2 AA1 2 ORD A 11 GLY A 15 -1 O ORD A 11 N GHP A 8 LINK C ASN A 2 N DPP A 3 1555 1555 1.33 LINK N ASN A 2 C 6NA A 101 1555 1555 1.33 LINK C DPP A 3 N GHP A 4 1555 1555 1.33 LINK NG DPP A 3 C D4P A 18 1555 1555 1.40 LINK C GHP A 4 N ORD A 5 1555 1555 1.33 LINK C ORD A 5 N DTH A 6 1555 1555 1.33 LINK C DTH A 6 N D4P A 7 1555 1555 1.33 LINK C D4P A 7 N GHP A 8 1555 1555 1.33 LINK C GHP A 8 N THR A 9 1555 1555 1.33 LINK C PHE A 10 N ORD A 11 1555 1555 1.33 LINK C ORD A 11 N D4P A 12 1555 1555 1.33 LINK C D4P A 12 N DTH A 13 1555 1555 1.33 LINK C DTH A 13 N D4P A 14 1555 1555 1.33 LINK C D4P A 14 N GLY A 15 1555 1555 1.33 LINK C LEU A 16 N DAL A 17 1555 1555 1.33 LINK C DAL A 17 N D4P A 18 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 1 268 CONECT 3 15 CONECT 15 3 16 21 CONECT 16 15 17 19 22 CONECT 17 16 18 26 CONECT 18 17 CONECT 19 16 20 23 24 CONECT 20 19 25 251 CONECT 21 15 CONECT 22 16 CONECT 23 19 CONECT 24 19 CONECT 25 20 CONECT 26 17 27 37 CONECT 27 26 28 30 38 CONECT 28 27 29 44 CONECT 29 28 CONECT 30 27 31 36 CONECT 31 30 32 39 CONECT 32 31 33 40 CONECT 33 32 34 35 CONECT 34 33 41 CONECT 35 33 36 42 CONECT 36 30 35 43 CONECT 37 26 CONECT 38 27 CONECT 39 31 CONECT 40 32 CONECT 41 34 CONECT 42 35 CONECT 43 36 CONECT 44 28 45 52 CONECT 45 44 46 51 53 CONECT 46 45 47 54 55 CONECT 47 46 48 56 57 CONECT 48 47 49 58 59 CONECT 49 48 60 61 CONECT 50 51 CONECT 51 45 50 63 CONECT 52 44 CONECT 53 45 CONECT 54 46 CONECT 55 46 CONECT 56 47 CONECT 57 47 CONECT 58 48 CONECT 59 48 CONECT 60 49 CONECT 61 49 CONECT 63 51 64 70 CONECT 64 63 65 68 71 CONECT 65 64 66 67 72 CONECT 66 65 73 74 75 CONECT 67 65 76 CONECT 68 64 69 77 CONECT 69 68 CONECT 70 63 CONECT 71 64 CONECT 72 65 CONECT 73 66 CONECT 74 66 CONECT 75 66 CONECT 76 67 CONECT 77 68 78 88 CONECT 78 77 79 81 89 CONECT 79 78 80 94 CONECT 80 79 CONECT 81 78 82 87 CONECT 82 81 83 90 CONECT 83 82 84 CONECT 84 83 85 86 CONECT 85 84 91 CONECT 86 84 87 92 CONECT 87 81 86 93 CONECT 88 77 CONECT 89 78 CONECT 90 82 CONECT 91 85 CONECT 92 86 CONECT 93 87 CONECT 94 79 95 105 CONECT 95 94 96 98 106 CONECT 96 95 97 112 CONECT 97 96 CONECT 98 95 99 104 CONECT 99 98 100 107 CONECT 100 99 101 108 CONECT 101 100 102 103 CONECT 102 101 109 CONECT 103 101 104 110 CONECT 104 98 103 111 CONECT 105 94 CONECT 106 95 CONECT 107 99 CONECT 108 100 CONECT 109 102 CONECT 110 103 CONECT 111 104 CONECT 112 96 CONECT 128 146 CONECT 146 128 147 154 CONECT 147 146 148 153 155 CONECT 148 147 149 156 157 CONECT 149 148 150 158 159 CONECT 150 149 151 160 161 CONECT 151 150 162 163 CONECT 152 153 CONECT 153 147 152 165 CONECT 154 146 CONECT 155 147 CONECT 156 148 CONECT 157 148 CONECT 158 149 CONECT 159 149 CONECT 160 150 CONECT 161 150 CONECT 162 151 CONECT 163 151 CONECT 165 153 166 176 CONECT 166 165 167 169 177 CONECT 167 166 168 182 CONECT 168 167 CONECT 169 166 170 175 CONECT 170 169 171 178 CONECT 171 170 172 CONECT 172 171 173 174 CONECT 173 172 179 CONECT 174 172 175 180 CONECT 175 169 174 181 CONECT 176 165 CONECT 177 166 CONECT 178 170 CONECT 179 173 CONECT 180 174 CONECT 181 175 CONECT 182 167 183 189 CONECT 183 182 184 187 190 CONECT 184 183 185 186 191 CONECT 185 184 192 193 194 CONECT 186 184 195 CONECT 187 183 188 196 CONECT 188 187 CONECT 189 182 CONECT 190 183 CONECT 191 184 CONECT 192 185 CONECT 193 185 CONECT 194 185 CONECT 195 186 CONECT 196 187 197 207 CONECT 197 196 198 200 208 CONECT 198 197 199 213 CONECT 199 198 CONECT 200 197 201 206 CONECT 201 200 202 209 CONECT 202 201 203 CONECT 203 202 204 205 CONECT 204 203 210 CONECT 205 203 206 211 CONECT 206 200 205 212 CONECT 207 196 CONECT 208 197 CONECT 209 201 CONECT 210 204 CONECT 211 205 CONECT 212 206 CONECT 213 198 CONECT 222 239 CONECT 239 222 240 244 CONECT 240 239 241 242 245 CONECT 241 240 246 247 248 CONECT 242 240 243 249 CONECT 243 242 CONECT 244 239 CONECT 245 240 CONECT 246 241 CONECT 247 241 CONECT 248 241 CONECT 249 242 250 260 CONECT 250 249 251 253 261 CONECT 251 20 250 252 CONECT 252 251 CONECT 253 250 254 259 CONECT 254 253 255 262 CONECT 255 254 256 CONECT 256 255 257 258 CONECT 257 256 263 CONECT 258 256 259 264 CONECT 259 253 258 265 CONECT 260 249 CONECT 261 250 CONECT 262 254 CONECT 263 257 CONECT 264 258 CONECT 265 259 CONECT 267 268 270 274 275 CONECT 268 1 267 269 CONECT 269 268 CONECT 270 267 271 276 277 CONECT 271 270 272 278 279 CONECT 272 271 273 280 281 CONECT 273 272 282 283 284 CONECT 274 267 CONECT 275 267 CONECT 276 270 CONECT 277 270 CONECT 278 271 CONECT 279 271 CONECT 280 272 CONECT 281 272 CONECT 282 273 CONECT 283 273 CONECT 284 273 MASTER 113 0 13 0 2 0 0 6 152 1 213 2 END