data_8V4T # _entry.id 8V4T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.396 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8V4T pdb_00008v4t 10.2210/pdb8v4t/pdb WWPDB D_1000279528 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-10-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8V4T _pdbx_database_status.recvd_initial_deposition_date 2023-11-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email wdw@gsu.edu _pdbx_contact_author.name_first W _pdbx_contact_author.name_last Wilson _pdbx_contact_author.name_mi David _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5225-5089 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Terrell, J.R.' 1 0000-0001-5394-5663 'Wilson, W.D.' 2 0000-0001-5225-5089 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural Examination of DNA Minor Groove Binding by Diamidine Stacked Dimers' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Terrell, J.R.' 1 0000-0001-5394-5663 primary 'Paul, A.' 2 ? primary 'Ogbonna, E.N.' 3 ? primary 'Farahat, A.A.' 4 ? primary 'Wilson, W.D.' 5 0000-0001-5225-5089 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*CP*GP*TP*TP*AP*AP*CP*GP*CP*AP*GP*C)-3') ; 4899.179 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 7 ? ? ? ? 3 water nat water 18.015 92 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DT)(DG)(DC)(DG)(DT)(DT)(DA)(DA)(DC)(DG)(DC)(DA)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCTGCGTTAACGCAGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DT n 1 8 DT n 1 9 DA n 1 10 DA n 1 11 DC n 1 12 DG n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DC 13 13 13 DC DC A . n A 1 14 DA 14 14 14 DA DA A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DC 16 16 16 DC DC A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id CA _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id CA _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 101 1 CA CA A . C 2 CA 1 102 2 CA CA A . D 2 CA 1 103 3 CA CA A . E 2 CA 1 104 4 CA CA A . F 2 CA 1 105 5 CA CA A . G 2 CA 1 106 6 CA CA A . H 2 CA 1 107 7 CA CA A . I 3 HOH 1 201 21 HOH HOH A . I 3 HOH 2 202 55 HOH HOH A . I 3 HOH 3 203 51 HOH HOH A . I 3 HOH 4 204 89 HOH HOH A . I 3 HOH 5 205 59 HOH HOH A . I 3 HOH 6 206 35 HOH HOH A . I 3 HOH 7 207 42 HOH HOH A . I 3 HOH 8 208 5 HOH HOH A . I 3 HOH 9 209 47 HOH HOH A . I 3 HOH 10 210 67 HOH HOH A . I 3 HOH 11 211 61 HOH HOH A . I 3 HOH 12 212 50 HOH HOH A . I 3 HOH 13 213 28 HOH HOH A . I 3 HOH 14 214 12 HOH HOH A . I 3 HOH 15 215 23 HOH HOH A . I 3 HOH 16 216 53 HOH HOH A . I 3 HOH 17 217 19 HOH HOH A . I 3 HOH 18 218 81 HOH HOH A . I 3 HOH 19 219 34 HOH HOH A . I 3 HOH 20 220 74 HOH HOH A . I 3 HOH 21 221 43 HOH HOH A . I 3 HOH 22 222 8 HOH HOH A . I 3 HOH 23 223 38 HOH HOH A . I 3 HOH 24 224 9 HOH HOH A . I 3 HOH 25 225 15 HOH HOH A . I 3 HOH 26 226 29 HOH HOH A . I 3 HOH 27 227 36 HOH HOH A . I 3 HOH 28 228 73 HOH HOH A . I 3 HOH 29 229 13 HOH HOH A . I 3 HOH 30 230 76 HOH HOH A . I 3 HOH 31 231 70 HOH HOH A . I 3 HOH 32 232 16 HOH HOH A . I 3 HOH 33 233 32 HOH HOH A . I 3 HOH 34 234 72 HOH HOH A . I 3 HOH 35 235 11 HOH HOH A . I 3 HOH 36 236 26 HOH HOH A . I 3 HOH 37 237 40 HOH HOH A . I 3 HOH 38 238 64 HOH HOH A . I 3 HOH 39 239 82 HOH HOH A . I 3 HOH 40 240 14 HOH HOH A . I 3 HOH 41 241 91 HOH HOH A . I 3 HOH 42 242 27 HOH HOH A . I 3 HOH 43 243 39 HOH HOH A . I 3 HOH 44 244 79 HOH HOH A . I 3 HOH 45 245 31 HOH HOH A . I 3 HOH 46 246 58 HOH HOH A . I 3 HOH 47 247 2 HOH HOH A . I 3 HOH 48 248 56 HOH HOH A . I 3 HOH 49 249 25 HOH HOH A . I 3 HOH 50 250 69 HOH HOH A . I 3 HOH 51 251 48 HOH HOH A . I 3 HOH 52 252 6 HOH HOH A . I 3 HOH 53 253 45 HOH HOH A . I 3 HOH 54 254 77 HOH HOH A . I 3 HOH 55 255 75 HOH HOH A . I 3 HOH 56 256 92 HOH HOH A . I 3 HOH 57 257 83 HOH HOH A . I 3 HOH 58 258 37 HOH HOH A . I 3 HOH 59 259 54 HOH HOH A . I 3 HOH 60 260 46 HOH HOH A . I 3 HOH 61 261 80 HOH HOH A . I 3 HOH 62 262 93 HOH HOH A . I 3 HOH 63 263 20 HOH HOH A . I 3 HOH 64 264 33 HOH HOH A . I 3 HOH 65 265 41 HOH HOH A . I 3 HOH 66 266 63 HOH HOH A . I 3 HOH 67 267 62 HOH HOH A . I 3 HOH 68 268 44 HOH HOH A . I 3 HOH 69 269 17 HOH HOH A . I 3 HOH 70 270 78 HOH HOH A . I 3 HOH 71 271 24 HOH HOH A . I 3 HOH 72 272 1 HOH HOH A . I 3 HOH 73 273 84 HOH HOH A . I 3 HOH 74 274 60 HOH HOH A . I 3 HOH 75 275 10 HOH HOH A . I 3 HOH 76 276 7 HOH HOH A . I 3 HOH 77 277 87 HOH HOH A . I 3 HOH 78 278 4 HOH HOH A . I 3 HOH 79 279 30 HOH HOH A . I 3 HOH 80 280 66 HOH HOH A . I 3 HOH 81 281 85 HOH HOH A . I 3 HOH 82 282 57 HOH HOH A . I 3 HOH 83 283 18 HOH HOH A . I 3 HOH 84 284 68 HOH HOH A . I 3 HOH 85 285 90 HOH HOH A . I 3 HOH 86 286 65 HOH HOH A . I 3 HOH 87 287 22 HOH HOH A . I 3 HOH 88 288 3 HOH HOH A . I 3 HOH 89 289 49 HOH HOH A . I 3 HOH 90 290 71 HOH HOH A . I 3 HOH 91 291 88 HOH HOH A . I 3 HOH 92 292 52 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8V4T _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.324 _cell.length_a_esd ? _cell.length_b 38.324 _cell.length_b_esd ? _cell.length_c 163.022 _cell.length_c_esd ? _cell.volume 207356.910 _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8V4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ;R 3 2" ; _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8V4T _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10mM HEPES, pH=8.6, 600mM CaCl2, 38% PEG200 mixed 1:1 with 1mM DNA duplex' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 295 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-10-15 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Vertical DCM' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979338 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979338 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-1 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 15.97 _reflns.entry_id 8V4T _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.47 _reflns.d_resolution_low 25.74 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8251 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.56 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.7 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.58 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.05689 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.05398 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.01765 _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.47 _reflns_shell.d_res_low 1.523 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.52 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 802 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 10.6 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.5237 _reflns_shell.pdbx_Rpim_I_all 0.1595 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.936 _reflns_shell.pdbx_CC_star 0.983 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.4983 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 23.67 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8V4T _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.47 _refine.ls_d_res_low 25.74 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8226 _refine.ls_number_reflns_R_free 820 _refine.ls_number_reflns_R_work 7406 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.61 _refine.ls_percent_reflns_R_free 9.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1968 _refine.ls_R_factor_R_free 0.2107 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1953 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.6658 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1709 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.47 _refine_hist.d_res_low 25.74 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 424 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 325 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0130 ? 364 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.5030 ? 560 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0799 ? 63 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0180 ? 16 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 34.6666 ? 156 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.47 1.56 . . 134 1203 100.00 . . . . 0.2522 . . . . . . . . . . . 0.2667 'X-RAY DIFFRACTION' 1.56 1.68 . . 133 1204 99.18 . . . . 0.2095 . . . . . . . . . . . 0.2471 'X-RAY DIFFRACTION' 1.68 1.85 . . 131 1208 98.97 . . . . 0.1958 . . . . . . . . . . . 0.2336 'X-RAY DIFFRACTION' 1.85 2.12 . . 137 1233 100.00 . . . . 0.2048 . . . . . . . . . . . 0.2500 'X-RAY DIFFRACTION' 2.12 2.67 . . 138 1242 100.00 . . . . 0.2055 . . . . . . . . . . . 0.2253 'X-RAY DIFFRACTION' 2.67 25.74 . . 147 1316 99.52 . . . . 0.1795 . . . . . . . . . . . 0.1791 # _struct.entry_id 8V4T _struct.title ;The Native DNA 16-mer sequence 5'-GCTGCGTTAACGCAGC-3 ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8V4T _struct_keywords.text 'DNA duplex, DNA, 16-mer, Self-complementary' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8V4T _struct_ref.pdbx_db_accession 8V4T _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8V4T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8V4T _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1840 ? 1 MORE -41 ? 1 'SSA (A^2)' 6080 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 17_435 x-y-2/3,-y-4/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -44.2527434328 0.0000000000 0.0000000000 -1.0000000000 108.6813333333 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 2 OP1 ? ? ? 1_555 B CA . CA ? ? A DC 2 A CA 101 1_555 ? ? ? ? ? ? ? 2.326 ? ? metalc2 metalc ? ? A DC 2 OP1 ? ? ? 1_555 B CA . CA ? ? A DC 2 A CA 101 2_455 ? ? ? ? ? ? ? 2.327 ? ? metalc3 metalc ? ? A DG 6 OP1 ? ? ? 1_555 D CA . CA ? ? A DG 6 A CA 103 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc4 metalc ? ? A DG 6 OP1 ? ? ? 1_555 D CA . CA ? ? A DG 6 A CA 103 3_545 ? ? ? ? ? ? ? 2.292 ? ? metalc5 metalc ? ? A DG 6 OP2 ? ? ? 1_555 E CA . CA ? ? A DG 6 A CA 104 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc6 metalc ? ? A DG 6 OP2 ? ? ? 1_555 E CA . CA ? ? A DG 6 A CA 104 3_545 ? ? ? ? ? ? ? 2.325 ? ? metalc7 metalc ? ? A DT 7 OP1 ? ? ? 1_555 H CA . CA ? ? A DT 7 A CA 107 1_555 ? ? ? ? ? ? ? 3.123 ? ? metalc8 metalc ? ? A DG 15 OP1 ? ? ? 1_555 C CA . CA ? ? A DG 15 A CA 102 18_445 ? ? ? ? ? ? ? 2.331 ? ? metalc9 metalc ? ? A DC 16 OP1 ? ? ? 1_555 G CA . CA ? ? A DC 16 A CA 106 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc10 metalc ? ? A DC 16 OP1 ? ? ? 1_555 G CA . CA ? ? A DC 16 A CA 106 3_545 ? ? ? ? ? ? ? 2.223 ? ? metalc11 metalc ? ? B CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 101 A HOH 278 1_555 ? ? ? ? ? ? ? 2.371 ? ? metalc12 metalc ? ? B CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 101 A HOH 278 2_455 ? ? ? ? ? ? ? 2.323 ? ? metalc13 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 208 1_555 ? ? ? ? ? ? ? 2.281 ? ? metalc14 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 258 1_555 ? ? ? ? ? ? ? 2.543 ? ? metalc15 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 272 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc16 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 283 1_555 ? ? ? ? ? ? ? 2.961 ? ? metalc17 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 287 1_555 ? ? ? ? ? ? ? 2.400 ? ? metalc18 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 288 1_555 ? ? ? ? ? ? ? 2.481 ? ? metalc19 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 276 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc20 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 276 3_545 ? ? ? ? ? ? ? 2.373 ? ? metalc21 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 104 A HOH 252 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc22 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 104 A HOH 252 2_445 ? ? ? ? ? ? ? 2.333 ? ? metalc23 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 235 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc24 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 240 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc25 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 256 17_435 ? ? ? ? ? ? ? 2.345 ? ? metalc26 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 263 1_555 ? ? ? ? ? ? ? 2.405 ? ? metalc27 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 264 1_555 ? ? ? ? ? ? ? 2.609 ? ? metalc28 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 269 1_555 ? ? ? ? ? ? ? 2.411 ? ? metalc29 metalc ? ? F CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 105 A HOH 289 1_555 ? ? ? ? ? ? ? 2.471 ? ? metalc30 metalc ? ? G CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 106 A HOH 247 1_555 ? ? ? ? ? ? ? 2.349 ? ? metalc31 metalc ? ? G CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 106 A HOH 247 2_445 ? ? ? ? ? ? ? 2.231 ? ? metalc32 metalc ? ? H CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 107 A HOH 245 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc33 metalc ? ? H CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 107 A HOH 253 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc34 metalc ? ? H CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 107 A HOH 275 1_555 ? ? ? ? ? ? ? 2.345 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 16 N3 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 16 O2 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 16 N4 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 15 N1 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 15 O6 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 15 N2 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 14 N1 ? ? A DT 3 A DA 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 14 N6 ? ? A DT 3 A DA 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 12 N1 ? ? A DC 5 A DG 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 12 O6 ? ? A DC 5 A DG 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 12 N2 ? ? A DC 5 A DG 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 11 N3 ? ? A DG 6 A DC 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 11 O2 ? ? A DG 6 A DC 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 11 N4 ? ? A DG 6 A DC 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 10 N1 ? ? A DT 7 A DA 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 10 N6 ? ? A DT 7 A DA 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 9 N1 ? ? A DT 8 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 9 N6 ? ? A DT 8 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 9 A DT 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 9 A DT 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 10 A DT 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 10 A DT 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 11 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 11 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 11 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 12 A DC 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 12 A DC 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 12 A DC 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 13 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 13 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 14 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 14 A DT 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 14 A DT 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 16 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 16 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 OP1 ? A DC 2 ? A DC 2 ? 1_555 0.0 ? 2 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 278 ? 1_555 173.6 ? 3 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 278 ? 1_555 173.6 ? 4 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 278 ? 2_455 84.0 ? 5 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 278 ? 2_455 84.0 ? 6 O ? I HOH . ? A HOH 278 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? I HOH . ? A HOH 278 ? 2_455 90.0 ? 7 OP1 ? A DG 6 ? A DG 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 OP1 ? A DG 6 ? A DG 6 ? 1_555 0.0 ? 8 OP1 ? A DG 6 ? A DG 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 276 ? 1_555 172.6 ? 9 OP1 ? A DG 6 ? A DG 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 276 ? 1_555 172.6 ? 10 OP1 ? A DG 6 ? A DG 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 276 ? 3_545 87.0 ? 11 OP1 ? A DG 6 ? A DG 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 276 ? 3_545 87.0 ? 12 O ? I HOH . ? A HOH 276 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? I HOH . ? A HOH 276 ? 3_545 85.6 ? 13 OP2 ? A DG 6 ? A DG 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 OP2 ? A DG 6 ? A DG 6 ? 1_555 0.0 ? 14 OP2 ? A DG 6 ? A DG 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 1_555 88.7 ? 15 OP2 ? A DG 6 ? A DG 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 1_555 88.7 ? 16 OP2 ? A DG 6 ? A DG 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 2_445 173.5 ? 17 OP2 ? A DG 6 ? A DG 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 2_445 173.5 ? 18 O ? I HOH . ? A HOH 252 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? I HOH . ? A HOH 252 ? 2_445 87.9 ? 19 OP1 ? A DT 7 ? A DT 7 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? I HOH . ? A HOH 245 ? 1_555 87.8 ? 20 OP1 ? A DT 7 ? A DT 7 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? I HOH . ? A HOH 253 ? 1_555 88.5 ? 21 O ? I HOH . ? A HOH 245 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? I HOH . ? A HOH 253 ? 1_555 74.0 ? 22 OP1 ? A DT 7 ? A DT 7 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? I HOH . ? A HOH 275 ? 1_555 115.9 ? 23 O ? I HOH . ? A HOH 245 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? I HOH . ? A HOH 275 ? 1_555 138.5 ? 24 O ? I HOH . ? A HOH 253 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? I HOH . ? A HOH 275 ? 1_555 73.1 ? 25 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 208 ? 1_555 69.7 ? 26 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 258 ? 1_555 73.1 ? 27 O ? I HOH . ? A HOH 208 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 258 ? 1_555 3.7 ? 28 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 272 ? 1_555 71.0 ? 29 O ? I HOH . ? A HOH 208 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 272 ? 1_555 3.3 ? 30 O ? I HOH . ? A HOH 258 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 272 ? 1_555 2.6 ? 31 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 283 ? 1_555 70.7 ? 32 O ? I HOH . ? A HOH 208 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 283 ? 1_555 1.2 ? 33 O ? I HOH . ? A HOH 258 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 283 ? 1_555 3.4 ? 34 O ? I HOH . ? A HOH 272 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 283 ? 1_555 3.9 ? 35 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 287 ? 1_555 75.1 ? 36 O ? I HOH . ? A HOH 208 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 287 ? 1_555 5.8 ? 37 O ? I HOH . ? A HOH 258 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 287 ? 1_555 2.1 ? 38 O ? I HOH . ? A HOH 272 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 287 ? 1_555 4.3 ? 39 O ? I HOH . ? A HOH 283 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 287 ? 1_555 5.3 ? 40 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 288 ? 1_555 74.1 ? 41 O ? I HOH . ? A HOH 208 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 288 ? 1_555 4.3 ? 42 O ? I HOH . ? A HOH 258 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 288 ? 1_555 1.9 ? 43 O ? I HOH . ? A HOH 272 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 288 ? 1_555 4.4 ? 44 O ? I HOH . ? A HOH 283 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 288 ? 1_555 3.5 ? 45 O ? I HOH . ? A HOH 287 ? 1_555 CA ? C CA . ? A CA 102 ? 18_445 O ? I HOH . ? A HOH 288 ? 1_555 2.4 ? 46 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 OP1 ? A DC 16 ? A DC 16 ? 1_555 0.0 ? 47 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? I HOH . ? A HOH 247 ? 1_555 87.4 ? 48 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? I HOH . ? A HOH 247 ? 1_555 87.4 ? 49 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? I HOH . ? A HOH 247 ? 2_445 109.0 ? 50 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? I HOH . ? A HOH 247 ? 2_445 109.0 ? 51 O ? I HOH . ? A HOH 247 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? I HOH . ? A HOH 247 ? 2_445 78.5 ? 52 O ? I HOH . ? A HOH 235 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 240 ? 1_555 74.2 ? 53 O ? I HOH . ? A HOH 235 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 256 ? 17_435 161.5 ? 54 O ? I HOH . ? A HOH 240 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 256 ? 17_435 89.7 ? 55 O ? I HOH . ? A HOH 235 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 263 ? 1_555 107.8 ? 56 O ? I HOH . ? A HOH 240 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 263 ? 1_555 83.9 ? 57 O ? I HOH . ? A HOH 256 ? 17_435 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 263 ? 1_555 78.7 ? 58 O ? I HOH . ? A HOH 235 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 264 ? 1_555 68.0 ? 59 O ? I HOH . ? A HOH 240 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 264 ? 1_555 123.2 ? 60 O ? I HOH . ? A HOH 256 ? 17_435 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 264 ? 1_555 129.9 ? 61 O ? I HOH . ? A HOH 263 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 264 ? 1_555 69.9 ? 62 O ? I HOH . ? A HOH 235 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 269 ? 1_555 88.5 ? 63 O ? I HOH . ? A HOH 240 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 269 ? 1_555 89.4 ? 64 O ? I HOH . ? A HOH 256 ? 17_435 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 269 ? 1_555 82.2 ? 65 O ? I HOH . ? A HOH 263 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 269 ? 1_555 159.8 ? 66 O ? I HOH . ? A HOH 264 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 269 ? 1_555 128.9 ? 67 O ? I HOH . ? A HOH 235 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 289 ? 1_555 124.6 ? 68 O ? I HOH . ? A HOH 240 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 289 ? 1_555 158.3 ? 69 O ? I HOH . ? A HOH 256 ? 17_435 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 289 ? 1_555 69.8 ? 70 O ? I HOH . ? A HOH 263 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 289 ? 1_555 98.5 ? 71 O ? I HOH . ? A HOH 264 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 289 ? 1_555 77.2 ? 72 O ? I HOH . ? A HOH 269 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? I HOH . ? A HOH 289 ? 1_555 81.1 ? # _pdbx_entry_details.entry_id 8V4T _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DA 10 ? ? "C3'" A DA 10 ? ? 1.375 1.419 -0.044 0.006 N 2 1 "O3'" A DG 12 ? ? "C3'" A DG 12 ? ? 1.381 1.419 -0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.67 108.30 2.37 0.30 N 2 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.37 108.30 2.07 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 101 ? B CA . 2 1 A CA 103 ? D CA . 3 1 A CA 104 ? E CA . 4 1 A CA 106 ? G CA . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x-y,-y,-z 5 -x,-x+y,-z 6 y,x,-z 7 x+1/3,y+2/3,z+2/3 8 -y+1/3,x-y+2/3,z+2/3 9 -x+y+1/3,-x+2/3,z+2/3 10 x-y+1/3,-y+2/3,-z+2/3 11 -x+1/3,-x+y+2/3,-z+2/3 12 y+1/3,x+2/3,-z+2/3 13 x+2/3,y+1/3,z+1/3 14 -y+2/3,x-y+1/3,z+1/3 15 -x+y+2/3,-x+1/3,z+1/3 16 x-y+2/3,-y+1/3,-z+1/3 17 -x+2/3,-x+y+1/3,-z+1/3 18 y+2/3,x+1/3,-z+1/3 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -10.129020688 _pdbx_refine_tls.origin_y -20.8961596797 _pdbx_refine_tls.origin_z 55.5652404228 _pdbx_refine_tls.T[1][1] 0.155924284179 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] -0.000134382411856 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.000806038663211 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.220743669214 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.00790803811146 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.177746450996 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] -0.323033726052 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.0400608496392 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.691572598986 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] -0.170495186517 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.174446682087 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 5.75700522758 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0550230480378 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.0619126814835 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.0445077894852 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0114988884293 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0331644845288 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.000441462697997 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.049316968361 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.420427741866 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.0869814659342 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id B _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id I _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 16 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 286 ? 6.09 . 2 1 O ? A HOH 287 ? 6.29 . 3 1 O ? A HOH 288 ? 6.58 . 4 1 O ? A HOH 289 ? 6.63 . 5 1 O ? A HOH 290 ? 6.69 . 6 1 O ? A HOH 291 ? 7.22 . 7 1 O ? A HOH 292 ? 8.78 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 8V4T _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 16 17_435 -0.309 -0.128 0.069 0.505 -10.763 1.067 1 A_DG1:DC16_A A 1 ? A 16 ? 19 1 1 A DC 2 1_555 A DG 15 17_435 0.171 -0.134 0.353 -10.201 -13.095 -0.851 2 A_DC2:DG15_A A 2 ? A 15 ? 19 1 1 A DT 3 1_555 A DA 14 17_435 -0.091 -0.105 0.115 -7.245 -16.267 0.374 3 A_DT3:DA14_A A 3 ? A 14 ? 20 1 1 A DG 4 1_555 A DC 13 17_435 -0.273 -0.116 -0.241 -10.900 -2.321 0.031 4 A_DG4:DC13_A A 4 ? A 13 ? 19 1 1 A DC 5 1_555 A DG 12 17_435 0.343 -0.092 -0.059 3.949 -2.106 0.437 5 A_DC5:DG12_A A 5 ? A 12 ? 19 1 1 A DG 6 1_555 A DC 11 17_435 -0.124 -0.099 0.208 -0.949 -13.898 0.430 6 A_DG6:DC11_A A 6 ? A 11 ? 19 1 1 A DT 7 1_555 A DA 10 17_435 -0.079 -0.182 0.157 -6.650 -11.758 -1.164 7 A_DT7:DA10_A A 7 ? A 10 ? 20 1 1 A DT 8 1_555 A DA 9 17_435 0.054 -0.059 -0.089 -3.486 -9.127 2.810 8 A_DT8:DA9_A A 8 ? A 9 ? 20 1 1 A DA 9 1_555 A DT 8 17_435 -0.054 -0.059 -0.089 3.486 -9.127 2.810 9 A_DA9:DT8_A A 9 ? A 8 ? 20 1 1 A DA 10 1_555 A DT 7 17_435 0.079 -0.182 0.157 6.650 -11.758 -1.164 10 A_DA10:DT7_A A 10 ? A 7 ? 20 1 1 A DC 11 1_555 A DG 6 17_435 0.124 -0.099 0.208 0.949 -13.898 0.430 11 A_DC11:DG6_A A 11 ? A 6 ? 19 1 1 A DG 12 1_555 A DC 5 17_435 -0.343 -0.092 -0.059 -3.949 -2.106 0.437 12 A_DG12:DC5_A A 12 ? A 5 ? 19 1 1 A DC 13 1_555 A DG 4 17_435 0.273 -0.116 -0.241 10.900 -2.321 0.031 13 A_DC13:DG4_A A 13 ? A 4 ? 19 1 1 A DA 14 1_555 A DT 3 17_435 0.091 -0.105 0.115 7.245 -16.267 0.374 14 A_DA14:DT3_A A 14 ? A 3 ? 20 1 1 A DG 15 1_555 A DC 2 17_435 -0.171 -0.134 0.353 10.201 -13.095 -0.851 15 A_DG15:DC2_A A 15 ? A 2 ? 19 1 1 A DC 16 1_555 A DG 1 17_435 0.309 -0.128 0.069 -0.505 -10.763 1.067 16 A_DC16:DG1_A A 16 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 16 17_435 A DC 2 1_555 A DG 15 17_435 -1.013 -0.542 3.499 -4.142 -1.745 34.656 -0.615 1.003 3.615 -2.914 6.917 34.938 1 AA_DG1DC2:DG15DC16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A DC 2 1_555 A DG 15 17_435 A DT 3 1_555 A DA 14 17_435 -0.628 -0.022 3.271 2.485 5.966 28.398 -1.338 1.788 3.136 11.965 -4.984 29.109 2 AA_DC2DT3:DA14DG15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A DT 3 1_555 A DA 14 17_435 A DG 4 1_555 A DC 13 17_435 0.449 1.072 3.489 1.872 2.044 42.593 1.252 -0.415 3.550 2.811 -2.574 42.679 3 AA_DT3DG4:DC13DA14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A DG 4 1_555 A DC 13 17_435 A DC 5 1_555 A DG 12 17_435 0.270 -0.025 3.023 -1.681 6.014 23.547 -1.797 -1.127 2.900 14.414 4.028 24.350 4 AA_DG4DC5:DG12DC13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A DC 5 1_555 A DG 12 17_435 A DG 6 1_555 A DC 11 17_435 -1.012 0.988 3.488 -3.659 0.049 40.623 1.412 1.016 3.563 0.071 5.257 40.780 5 AA_DC5DG6:DC11DG12_AA A 5 ? A 12 ? A 6 ? A 11 ? 1 A DG 6 1_555 A DC 11 17_435 A DT 7 1_555 A DA 10 17_435 0.200 0.362 3.524 -0.568 -0.550 35.479 0.680 -0.417 3.515 -0.902 0.932 35.487 6 AA_DG6DT7:DA10DC11_AA A 6 ? A 11 ? A 7 ? A 10 ? 1 A DT 7 1_555 A DA 10 17_435 A DT 8 1_555 A DA 9 17_435 0.401 0.230 3.299 2.795 4.565 30.086 -0.488 -0.195 3.319 8.708 -5.332 30.548 7 AA_DT7DT8:DA9DA10_AA A 7 ? A 10 ? A 8 ? A 9 ? 1 A DT 8 1_555 A DA 9 17_435 A DA 9 1_555 A DT 8 17_435 0.000 1.002 3.379 0.000 0.985 38.761 1.384 0.000 3.403 1.484 0.000 38.773 8 AA_DT8DA9:DT8DA9_AA A 8 ? A 9 ? A 9 ? A 8 ? 1 A DA 9 1_555 A DT 8 17_435 A DA 10 1_555 A DT 7 17_435 -0.401 0.230 3.299 -2.795 4.565 30.086 -0.488 0.195 3.319 8.708 5.332 30.548 9 AA_DA9DA10:DT7DT8_AA A 9 ? A 8 ? A 10 ? A 7 ? 1 A DA 10 1_555 A DT 7 17_435 A DC 11 1_555 A DG 6 17_435 -0.200 0.362 3.524 0.568 -0.550 35.479 0.680 0.417 3.515 -0.902 -0.932 35.487 10 AA_DA10DC11:DG6DT7_AA A 10 ? A 7 ? A 11 ? A 6 ? 1 A DC 11 1_555 A DG 6 17_435 A DG 12 1_555 A DC 5 17_435 1.012 0.988 3.488 3.659 0.049 40.623 1.412 -1.016 3.563 0.071 -5.257 40.780 11 AA_DC11DG12:DC5DG6_AA A 11 ? A 6 ? A 12 ? A 5 ? 1 A DG 12 1_555 A DC 5 17_435 A DC 13 1_555 A DG 4 17_435 -0.270 -0.025 3.023 1.681 6.014 23.547 -1.797 1.127 2.900 14.414 -4.028 24.350 12 AA_DG12DC13:DG4DC5_AA A 12 ? A 5 ? A 13 ? A 4 ? 1 A DC 13 1_555 A DG 4 17_435 A DA 14 1_555 A DT 3 17_435 -0.449 1.072 3.489 -1.872 2.044 42.593 1.252 0.415 3.550 2.811 2.574 42.679 13 AA_DC13DA14:DT3DG4_AA A 13 ? A 4 ? A 14 ? A 3 ? 1 A DA 14 1_555 A DT 3 17_435 A DG 15 1_555 A DC 2 17_435 0.628 -0.022 3.271 -2.485 5.966 28.398 -1.338 -1.788 3.136 11.965 4.984 29.109 14 AA_DA14DG15:DC2DT3_AA A 14 ? A 3 ? A 15 ? A 2 ? 1 A DG 15 1_555 A DC 2 17_435 A DC 16 1_555 A DG 1 17_435 1.013 -0.542 3.499 4.142 -1.745 34.656 -0.615 -1.003 3.615 -2.914 -6.917 34.938 15 AA_DG15DC16:DG1DC2_AA A 15 ? A 2 ? A 16 ? A 1 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM111749 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8F94 _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'R 3 2 :H' _space_group.name_Hall ;R 3 2" ; _space_group.IT_number 155 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 8V4T _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.026093 _atom_sites.fract_transf_matrix[1][2] 0.015065 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030130 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006134 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_