HEADER TRANSCRIPTION 30-NOV-23 8V5F TITLE NAN REGULATORY PROTEIN FULL-LENGTH FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOSUGAR-BINDING TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NAN REGULATORY PROTEIN, NANR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 ATCC: 700669; SOURCE 5 GENE: YBBH_2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS REGULATOR, DNA-BINDING, LIGAND-BOUND, ISOMERASE-DOMAIN, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.M.WOOD,R.C.J.DOBSON,C.R.HORNE REVDAT 1 04-DEC-24 8V5F 0 JRNL AUTH D.M.WOOD,R.C.J.DOBSON,C.R.HORNE JRNL TITL STRUCTURE OF FULL-LENGTH NAN-REGULATORY PROTEIN (NANR) FROM JRNL TITL 2 STREPTOCOCCUS PNEUMONIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 38521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9100 - 6.1400 0.94 2709 157 0.2158 0.2490 REMARK 3 2 6.1400 - 4.8800 0.97 2642 141 0.2337 0.2660 REMARK 3 3 4.8800 - 4.2600 0.97 2650 142 0.1988 0.2812 REMARK 3 4 4.2600 - 3.8700 0.98 2639 125 0.2125 0.2855 REMARK 3 5 3.8700 - 3.5900 0.96 2554 139 0.2479 0.2932 REMARK 3 6 3.5900 - 3.3800 0.97 2548 154 0.2730 0.3205 REMARK 3 7 3.3800 - 3.2100 0.98 2627 134 0.3076 0.3864 REMARK 3 8 3.2100 - 3.0700 0.98 2625 109 0.3068 0.3851 REMARK 3 9 3.0700 - 2.9500 0.99 2629 114 0.3449 0.3937 REMARK 3 10 2.9500 - 2.8500 0.99 2642 130 0.3380 0.3926 REMARK 3 11 2.8500 - 2.7600 0.99 2619 134 0.3491 0.4070 REMARK 3 12 2.7600 - 2.6800 1.00 2588 142 0.3623 0.4273 REMARK 3 13 2.6800 - 2.6100 0.98 2595 144 0.4140 0.4631 REMARK 3 14 2.6100 - 2.5500 0.98 2556 133 0.4425 0.4728 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.451 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.724 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 8057 REMARK 3 ANGLE : 0.821 10894 REMARK 3 CHIRALITY : 0.042 1218 REMARK 3 PLANARITY : 0.018 1396 REMARK 3 DIHEDRAL : 5.443 1061 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8V5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953739 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20161205 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 8.0.013 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39440 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.18770 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 8.0.012 REMARK 200 STARTING MODEL: PDB ENTRY 8TX9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M BIS-TRIS, REMARK 280 PH 5.5, 25% W/V PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.62050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.19250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.61300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 101.19250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.62050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.61300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -228.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 268 REMARK 465 LYS A 269 REMARK 465 LYS A 270 REMARK 465 LEU A 271 REMARK 465 ASN A 272 REMARK 465 GLY A 273 REMARK 465 TYR A 274 REMARK 465 ARG A 275 REMARK 465 ARG A 276 REMARK 465 GLN A 277 REMARK 465 LYS A 278 REMARK 465 ARG A 279 REMARK 465 VAL A 280 REMARK 465 ARG A 281 REMARK 465 LYS A 282 REMARK 465 SER A 283 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 LYS B 3 REMARK 465 PRO B 4 REMARK 465 LYS B 269 REMARK 465 LYS B 270 REMARK 465 LEU B 271 REMARK 465 ASN B 272 REMARK 465 GLY B 273 REMARK 465 TYR B 274 REMARK 465 ARG B 275 REMARK 465 ARG B 276 REMARK 465 GLN B 277 REMARK 465 LYS B 278 REMARK 465 ARG B 279 REMARK 465 VAL B 280 REMARK 465 ARG B 281 REMARK 465 LYS B 282 REMARK 465 SER B 283 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 LYS C 3 REMARK 465 PRO C 4 REMARK 465 ASP C 5 REMARK 465 ILE C 6 REMARK 465 ALA C 7 REMARK 465 THR C 8 REMARK 465 VAL C 9 REMARK 465 ILE C 10 REMARK 465 ASP C 11 REMARK 465 SER C 12 REMARK 465 HIS C 13 REMARK 465 PHE C 14 REMARK 465 GLU C 15 REMARK 465 GLU C 16 REMARK 465 MET C 17 REMARK 465 THR C 18 REMARK 465 ASP C 19 REMARK 465 LEU C 20 REMARK 465 GLU C 21 REMARK 465 GLN C 22 REMARK 465 GLU C 23 REMARK 465 ILE C 24 REMARK 465 ALA C 25 REMARK 465 ARG C 26 REMARK 465 TYR C 27 REMARK 465 PHE C 28 REMARK 465 LEU C 29 REMARK 465 GLN C 30 REMARK 465 ALA C 31 REMARK 465 GLU C 32 REMARK 465 THR C 33 REMARK 465 ILE C 34 REMARK 465 GLN C 35 REMARK 465 ASP C 36 REMARK 465 ASP C 37 REMARK 465 LEU C 38 REMARK 465 SER C 39 REMARK 465 SER C 40 REMARK 465 GLN C 41 REMARK 465 GLN C 42 REMARK 465 VAL C 43 REMARK 465 THR C 44 REMARK 465 GLN C 45 REMARK 465 LYS C 46 REMARK 465 LEU C 47 REMARK 465 HIS C 48 REMARK 465 ILE C 49 REMARK 465 SER C 50 REMARK 465 GLN C 51 REMARK 465 ALA C 52 REMARK 465 ALA C 53 REMARK 465 LEU C 54 REMARK 465 THR C 55 REMARK 465 ARG C 56 REMARK 465 PHE C 57 REMARK 465 ALA C 58 REMARK 465 LYS C 59 REMARK 465 LYS C 60 REMARK 465 CYS C 61 REMARK 465 GLY C 62 REMARK 465 PHE C 63 REMARK 465 THR C 64 REMARK 465 GLY C 65 REMARK 465 TYR C 66 REMARK 465 ARG C 67 REMARK 465 GLU C 68 REMARK 465 PHE C 69 REMARK 465 ILE C 70 REMARK 465 PHE C 71 REMARK 465 GLN C 72 REMARK 465 TYR C 73 REMARK 465 GLN C 74 REMARK 465 HIS C 75 REMARK 465 GLU C 76 REMARK 465 ALA C 77 REMARK 465 GLU C 78 REMARK 465 ASN C 79 REMARK 465 GLN C 80 REMARK 465 ALA C 81 REMARK 465 ASN C 82 REMARK 465 GLU C 267 REMARK 465 ASN C 268 REMARK 465 LYS C 269 REMARK 465 LYS C 270 REMARK 465 LEU C 271 REMARK 465 ASN C 272 REMARK 465 GLY C 273 REMARK 465 TYR C 274 REMARK 465 ARG C 275 REMARK 465 ARG C 276 REMARK 465 GLN C 277 REMARK 465 LYS C 278 REMARK 465 ARG C 279 REMARK 465 VAL C 280 REMARK 465 ARG C 281 REMARK 465 LYS C 282 REMARK 465 SER C 283 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 LYS D 3 REMARK 465 LYS D 269 REMARK 465 LYS D 270 REMARK 465 LEU D 271 REMARK 465 ASN D 272 REMARK 465 GLY D 273 REMARK 465 TYR D 274 REMARK 465 ARG D 275 REMARK 465 ARG D 276 REMARK 465 GLN D 277 REMARK 465 LYS D 278 REMARK 465 ARG D 279 REMARK 465 VAL D 280 REMARK 465 ARG D 281 REMARK 465 LYS D 282 REMARK 465 SER D 283 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 LYS B 195 CG CD CE NZ REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER C 88 OE2 GLU D 111 1.57 REMARK 500 OD1 ASP D 5 H THR D 8 1.58 REMARK 500 O ILE A 261 OG SER A 264 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG1 THR A 18 OE2 GLU D 103 2455 1.58 REMARK 500 OG1 THR A 18 OE2 GLU D 103 2455 2.09 REMARK 500 N TYR D 66 O3 PO4 A 303 2454 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 15 CG GLU B 15 CD 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 185 N - CD - CG ANGL. DEV. = -11.1 DEGREES REMARK 500 LYS C 86 CD - CE - NZ ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 18 173.47 -58.58 REMARK 500 GLN A 35 48.20 -84.59 REMARK 500 LEU A 38 33.19 -99.07 REMARK 500 SER A 212 52.97 -101.82 REMARK 500 GLU B 16 -6.91 -58.55 REMARK 500 ASP B 36 146.61 -175.05 REMARK 500 GLN B 80 -163.48 -110.33 REMARK 500 ALA B 81 -55.92 64.72 REMARK 500 THR B 184 101.33 -29.17 REMARK 500 PRO B 208 170.92 -55.88 REMARK 500 SER C 85 -159.16 49.31 REMARK 500 LYS C 86 -71.91 -63.95 REMARK 500 GLN D 35 42.04 -90.09 REMARK 500 LEU D 38 48.45 -99.02 REMARK 500 SER D 40 -39.85 144.17 REMARK 500 ASN D 82 1.84 -68.81 REMARK 500 SER D 234 -156.49 -147.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 140 0.17 SIDE CHAIN REMARK 500 ARG C 96 0.24 SIDE CHAIN REMARK 500 ARG D 102 0.14 SIDE CHAIN REMARK 500 ARG D 145 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 8V5F A 1 283 UNP A0A4M6CQT5_STREE DBREF2 8V5F A A0A4M6CQT5 1 283 DBREF1 8V5F B 1 283 UNP A0A4M6CQT5_STREE DBREF2 8V5F B A0A4M6CQT5 1 283 DBREF1 8V5F C 1 283 UNP A0A4M6CQT5_STREE DBREF2 8V5F C A0A4M6CQT5 1 283 DBREF1 8V5F D 1 283 UNP A0A4M6CQT5_STREE DBREF2 8V5F D A0A4M6CQT5 1 283 SEQRES 1 A 283 MET ASP LYS PRO ASP ILE ALA THR VAL ILE ASP SER HIS SEQRES 2 A 283 PHE GLU GLU MET THR ASP LEU GLU GLN GLU ILE ALA ARG SEQRES 3 A 283 TYR PHE LEU GLN ALA GLU THR ILE GLN ASP ASP LEU SER SEQRES 4 A 283 SER GLN GLN VAL THR GLN LYS LEU HIS ILE SER GLN ALA SEQRES 5 A 283 ALA LEU THR ARG PHE ALA LYS LYS CYS GLY PHE THR GLY SEQRES 6 A 283 TYR ARG GLU PHE ILE PHE GLN TYR GLN HIS GLU ALA GLU SEQRES 7 A 283 ASN GLN ALA ASN GLN VAL SER LYS HIS SER PRO LEU THR SEQRES 8 A 283 LYS ARG VAL LEU ARG SER TYR SER ASN MET ARG GLU GLN SEQRES 9 A 283 THR GLN ASP LEU ILE ASP GLU VAL GLN LEU GLU ARG ILE SEQRES 10 A 283 ALA GLN LEU ILE GLU ASP ALA GLU ARG VAL TYR PHE PHE SEQRES 11 A 283 GLY THR GLY SER SER GLY LEU VAL ALA ARG GLU MET LYS SEQRES 12 A 283 LEU ARG PHE MET ARG LEU GLY VAL VAL CYS GLU ALA LEU SEQRES 13 A 283 THR ASP GLN ASP GLY PHE ALA TRP THR THR SER ILE MET SEQRES 14 A 283 ASP GLU ASN CYS LEU VAL LEU GLY PHE SER LEU SER GLY SEQRES 15 A 283 SER THR PRO SER ILE LEU ASP SER LEU LEU ASP ALA LYS SEQRES 16 A 283 GLU MET GLY ALA LYS THR VAL LEU PHE SER SER VAL PRO SEQRES 17 A 283 ASN LYS ASP SER GLN ALA TYR THR GLU THR VAL LEU VAL SEQRES 18 A 283 ALA THR HIS SER GLN PRO SER TYR ILE GLN ARG ILE SER SEQRES 19 A 283 ALA GLN LEU PRO MET LEU PHE PHE ILE ASP LEU ILE TYR SEQRES 20 A 283 ALA TYR PHE LEU GLU ILE ASN ARG GLU SER LYS GLU LYS SEQRES 21 A 283 ILE PHE ASN SER TYR TRP GLU ASN LYS LYS LEU ASN GLY SEQRES 22 A 283 TYR ARG ARG GLN LYS ARG VAL ARG LYS SER SEQRES 1 B 283 MET ASP LYS PRO ASP ILE ALA THR VAL ILE ASP SER HIS SEQRES 2 B 283 PHE GLU GLU MET THR ASP LEU GLU GLN GLU ILE ALA ARG SEQRES 3 B 283 TYR PHE LEU GLN ALA GLU THR ILE GLN ASP ASP LEU SER SEQRES 4 B 283 SER GLN GLN VAL THR GLN LYS LEU HIS ILE SER GLN ALA SEQRES 5 B 283 ALA LEU THR ARG PHE ALA LYS LYS CYS GLY PHE THR GLY SEQRES 6 B 283 TYR ARG GLU PHE ILE PHE GLN TYR GLN HIS GLU ALA GLU SEQRES 7 B 283 ASN GLN ALA ASN GLN VAL SER LYS HIS SER PRO LEU THR SEQRES 8 B 283 LYS ARG VAL LEU ARG SER TYR SER ASN MET ARG GLU GLN SEQRES 9 B 283 THR GLN ASP LEU ILE ASP GLU VAL GLN LEU GLU ARG ILE SEQRES 10 B 283 ALA GLN LEU ILE GLU ASP ALA GLU ARG VAL TYR PHE PHE SEQRES 11 B 283 GLY THR GLY SER SER GLY LEU VAL ALA ARG GLU MET LYS SEQRES 12 B 283 LEU ARG PHE MET ARG LEU GLY VAL VAL CYS GLU ALA LEU SEQRES 13 B 283 THR ASP GLN ASP GLY PHE ALA TRP THR THR SER ILE MET SEQRES 14 B 283 ASP GLU ASN CYS LEU VAL LEU GLY PHE SER LEU SER GLY SEQRES 15 B 283 SER THR PRO SER ILE LEU ASP SER LEU LEU ASP ALA LYS SEQRES 16 B 283 GLU MET GLY ALA LYS THR VAL LEU PHE SER SER VAL PRO SEQRES 17 B 283 ASN LYS ASP SER GLN ALA TYR THR GLU THR VAL LEU VAL SEQRES 18 B 283 ALA THR HIS SER GLN PRO SER TYR ILE GLN ARG ILE SER SEQRES 19 B 283 ALA GLN LEU PRO MET LEU PHE PHE ILE ASP LEU ILE TYR SEQRES 20 B 283 ALA TYR PHE LEU GLU ILE ASN ARG GLU SER LYS GLU LYS SEQRES 21 B 283 ILE PHE ASN SER TYR TRP GLU ASN LYS LYS LEU ASN GLY SEQRES 22 B 283 TYR ARG ARG GLN LYS ARG VAL ARG LYS SER SEQRES 1 C 283 MET ASP LYS PRO ASP ILE ALA THR VAL ILE ASP SER HIS SEQRES 2 C 283 PHE GLU GLU MET THR ASP LEU GLU GLN GLU ILE ALA ARG SEQRES 3 C 283 TYR PHE LEU GLN ALA GLU THR ILE GLN ASP ASP LEU SER SEQRES 4 C 283 SER GLN GLN VAL THR GLN LYS LEU HIS ILE SER GLN ALA SEQRES 5 C 283 ALA LEU THR ARG PHE ALA LYS LYS CYS GLY PHE THR GLY SEQRES 6 C 283 TYR ARG GLU PHE ILE PHE GLN TYR GLN HIS GLU ALA GLU SEQRES 7 C 283 ASN GLN ALA ASN GLN VAL SER LYS HIS SER PRO LEU THR SEQRES 8 C 283 LYS ARG VAL LEU ARG SER TYR SER ASN MET ARG GLU GLN SEQRES 9 C 283 THR GLN ASP LEU ILE ASP GLU VAL GLN LEU GLU ARG ILE SEQRES 10 C 283 ALA GLN LEU ILE GLU ASP ALA GLU ARG VAL TYR PHE PHE SEQRES 11 C 283 GLY THR GLY SER SER GLY LEU VAL ALA ARG GLU MET LYS SEQRES 12 C 283 LEU ARG PHE MET ARG LEU GLY VAL VAL CYS GLU ALA LEU SEQRES 13 C 283 THR ASP GLN ASP GLY PHE ALA TRP THR THR SER ILE MET SEQRES 14 C 283 ASP GLU ASN CYS LEU VAL LEU GLY PHE SER LEU SER GLY SEQRES 15 C 283 SER THR PRO SER ILE LEU ASP SER LEU LEU ASP ALA LYS SEQRES 16 C 283 GLU MET GLY ALA LYS THR VAL LEU PHE SER SER VAL PRO SEQRES 17 C 283 ASN LYS ASP SER GLN ALA TYR THR GLU THR VAL LEU VAL SEQRES 18 C 283 ALA THR HIS SER GLN PRO SER TYR ILE GLN ARG ILE SER SEQRES 19 C 283 ALA GLN LEU PRO MET LEU PHE PHE ILE ASP LEU ILE TYR SEQRES 20 C 283 ALA TYR PHE LEU GLU ILE ASN ARG GLU SER LYS GLU LYS SEQRES 21 C 283 ILE PHE ASN SER TYR TRP GLU ASN LYS LYS LEU ASN GLY SEQRES 22 C 283 TYR ARG ARG GLN LYS ARG VAL ARG LYS SER SEQRES 1 D 283 MET ASP LYS PRO ASP ILE ALA THR VAL ILE ASP SER HIS SEQRES 2 D 283 PHE GLU GLU MET THR ASP LEU GLU GLN GLU ILE ALA ARG SEQRES 3 D 283 TYR PHE LEU GLN ALA GLU THR ILE GLN ASP ASP LEU SER SEQRES 4 D 283 SER GLN GLN VAL THR GLN LYS LEU HIS ILE SER GLN ALA SEQRES 5 D 283 ALA LEU THR ARG PHE ALA LYS LYS CYS GLY PHE THR GLY SEQRES 6 D 283 TYR ARG GLU PHE ILE PHE GLN TYR GLN HIS GLU ALA GLU SEQRES 7 D 283 ASN GLN ALA ASN GLN VAL SER LYS HIS SER PRO LEU THR SEQRES 8 D 283 LYS ARG VAL LEU ARG SER TYR SER ASN MET ARG GLU GLN SEQRES 9 D 283 THR GLN ASP LEU ILE ASP GLU VAL GLN LEU GLU ARG ILE SEQRES 10 D 283 ALA GLN LEU ILE GLU ASP ALA GLU ARG VAL TYR PHE PHE SEQRES 11 D 283 GLY THR GLY SER SER GLY LEU VAL ALA ARG GLU MET LYS SEQRES 12 D 283 LEU ARG PHE MET ARG LEU GLY VAL VAL CYS GLU ALA LEU SEQRES 13 D 283 THR ASP GLN ASP GLY PHE ALA TRP THR THR SER ILE MET SEQRES 14 D 283 ASP GLU ASN CYS LEU VAL LEU GLY PHE SER LEU SER GLY SEQRES 15 D 283 SER THR PRO SER ILE LEU ASP SER LEU LEU ASP ALA LYS SEQRES 16 D 283 GLU MET GLY ALA LYS THR VAL LEU PHE SER SER VAL PRO SEQRES 17 D 283 ASN LYS ASP SER GLN ALA TYR THR GLU THR VAL LEU VAL SEQRES 18 D 283 ALA THR HIS SER GLN PRO SER TYR ILE GLN ARG ILE SER SEQRES 19 D 283 ALA GLN LEU PRO MET LEU PHE PHE ILE ASP LEU ILE TYR SEQRES 20 D 283 ALA TYR PHE LEU GLU ILE ASN ARG GLU SER LYS GLU LYS SEQRES 21 D 283 ILE PHE ASN SER TYR TRP GLU ASN LYS LYS LEU ASN GLY SEQRES 22 D 283 TYR ARG ARG GLN LYS ARG VAL ARG LYS SER HET PO4 A 301 5 HET PO4 A 302 5 HET PO4 A 303 5 HET SO4 A 304 5 HET CL A 305 1 HET PO4 B 301 5 HET PO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET CL B 305 1 HET PO4 C 301 5 HET SO4 C 302 5 HET CL C 303 1 HET PO4 D 301 5 HET SO4 D 302 5 HET CL D 303 1 HETNAM PO4 PHOSPHATE ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 5 PO4 7(O4 P 3-) FORMUL 8 SO4 5(O4 S 2-) FORMUL 9 CL 4(CL 1-) FORMUL 21 HOH *21(H2 O) HELIX 1 AA1 ASP A 5 GLU A 15 1 11 HELIX 2 AA2 THR A 18 GLN A 30 1 13 HELIX 3 AA3 ALA A 31 ILE A 34 5 4 HELIX 4 AA4 SER A 39 HIS A 48 1 10 HELIX 5 AA5 SER A 50 CYS A 61 1 12 HELIX 6 AA6 GLY A 65 GLU A 76 1 12 HELIX 7 AA7 SER A 88 ILE A 109 1 22 HELIX 8 AA8 ASP A 110 ALA A 124 1 15 HELIX 9 AA9 GLY A 133 ARG A 148 1 16 HELIX 10 AB1 ASP A 158 SER A 167 1 10 HELIX 11 AB2 THR A 184 MET A 197 1 14 HELIX 12 AB3 GLN A 236 GLU A 252 1 17 HELIX 13 AB4 ASN A 254 TYR A 265 1 12 HELIX 14 AB5 ILE B 6 PHE B 14 1 9 HELIX 15 AB6 THR B 18 LEU B 29 1 12 HELIX 16 AB7 ALA B 31 GLN B 35 5 5 HELIX 17 AB8 SER B 39 HIS B 48 1 10 HELIX 18 AB9 SER B 50 CYS B 61 1 12 HELIX 19 AC1 GLY B 65 GLN B 80 1 16 HELIX 20 AC2 SER B 88 ILE B 109 1 22 HELIX 21 AC3 ASP B 110 ALA B 124 1 15 HELIX 22 AC4 GLY B 133 ARG B 148 1 16 HELIX 23 AC5 ASP B 158 SER B 167 1 10 HELIX 24 AC6 THR B 184 MET B 197 1 14 HELIX 25 AC7 ASP B 211 TYR B 215 5 5 HELIX 26 AC8 SER B 228 ARG B 232 5 5 HELIX 27 AC9 GLN B 236 GLU B 252 1 17 HELIX 28 AD1 ASN B 254 SER B 264 1 11 HELIX 29 AD2 SER C 88 ILE C 109 1 22 HELIX 30 AD3 ASP C 110 ALA C 124 1 15 HELIX 31 AD4 GLY C 133 ARG C 148 1 16 HELIX 32 AD5 ASP C 158 SER C 167 1 10 HELIX 33 AD6 THR C 184 MET C 197 1 14 HELIX 34 AD7 ASP C 211 TYR C 215 5 5 HELIX 35 AD8 SER C 228 ARG C 232 5 5 HELIX 36 AD9 GLN C 236 ILE C 253 1 18 HELIX 37 AE1 ASN C 254 SER C 264 1 11 HELIX 38 AE2 ASP D 5 HIS D 13 1 9 HELIX 39 AE3 PHE D 14 MET D 17 5 4 HELIX 40 AE4 THR D 18 GLN D 30 1 13 HELIX 41 AE5 ALA D 31 ASP D 36 5 6 HELIX 42 AE6 GLN D 41 HIS D 48 1 8 HELIX 43 AE7 SER D 50 CYS D 61 1 12 HELIX 44 AE8 GLY D 65 GLU D 78 1 14 HELIX 45 AE9 SER D 88 ILE D 109 1 22 HELIX 46 AF1 ASP D 110 ALA D 124 1 15 HELIX 47 AF2 GLY D 133 ARG D 148 1 16 HELIX 48 AF3 ASP D 158 SER D 167 1 10 HELIX 49 AF4 THR D 184 MET D 197 1 14 HELIX 50 AF5 ASN D 209 TYR D 215 5 7 HELIX 51 AF6 SER D 228 ARG D 232 5 5 HELIX 52 AF7 GLN D 236 GLU D 252 1 17 HELIX 53 AF8 ASN D 254 GLU D 267 1 14 SHEET 1 AA1 5 VAL A 152 LEU A 156 0 SHEET 2 AA1 5 ARG A 126 GLY A 131 1 N VAL A 127 O VAL A 152 SHEET 3 AA1 5 CYS A 173 PHE A 178 1 O LEU A 174 N TYR A 128 SHEET 4 AA1 5 LYS A 200 SER A 205 1 O VAL A 202 N GLY A 177 SHEET 5 AA1 5 GLU A 217 LEU A 220 1 O VAL A 219 N LEU A 203 SHEET 1 AA2 5 CYS B 153 LEU B 156 0 SHEET 2 AA2 5 ARG B 126 PHE B 130 1 N PHE B 129 O GLU B 154 SHEET 3 AA2 5 CYS B 173 PHE B 178 1 O LEU B 176 N TYR B 128 SHEET 4 AA2 5 LYS B 200 SER B 205 1 O VAL B 202 N GLY B 177 SHEET 5 AA2 5 GLU B 217 LEU B 220 1 O VAL B 219 N LEU B 203 SHEET 1 AA3 5 CYS C 153 LEU C 156 0 SHEET 2 AA3 5 ARG C 126 GLY C 131 1 N PHE C 129 O LEU C 156 SHEET 3 AA3 5 CYS C 173 PHE C 178 1 O LEU C 176 N PHE C 130 SHEET 4 AA3 5 LYS C 200 SER C 205 1 O VAL C 202 N GLY C 177 SHEET 5 AA3 5 GLU C 217 LEU C 220 1 O VAL C 219 N LEU C 203 SHEET 1 AA4 5 CYS D 153 LEU D 156 0 SHEET 2 AA4 5 ARG D 126 GLY D 131 1 N PHE D 129 O LEU D 156 SHEET 3 AA4 5 CYS D 173 PHE D 178 1 O LEU D 176 N TYR D 128 SHEET 4 AA4 5 LYS D 200 SER D 205 1 O VAL D 202 N GLY D 177 SHEET 5 AA4 5 GLU D 217 LEU D 220 1 O VAL D 219 N LEU D 203 CRYST1 53.241 109.226 202.385 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018783 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009155 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004941 0.00000