data_8V5J # _entry.id 8V5J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8V5J pdb_00008v5j 10.2210/pdb8v5j/pdb WWPDB D_1000279578 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-12-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8V5J _pdbx_database_status.recvd_initial_deposition_date 2023-11-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 8V4T _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email wdw@gsu.edu _pdbx_contact_author.name_first W _pdbx_contact_author.name_last Wilson _pdbx_contact_author.name_mi David _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5225-5089 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Terrell, J.R.' 1 0000-0001-5394-5663 'Wilson, W.D.' 2 0000-0001-5225-5089 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural Examination of DNA Minor Groove Binding by Diamidine Stacked Dimers' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Terrell, J.R.' 1 0000-0001-5394-5663 primary 'Paul, A.' 2 ? primary 'Ogbonna, E.N.' 3 ? primary 'Farahat, A.A.' 4 ? primary 'Wilson, W.D.' 5 0000-0001-5225-5089 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*GP*AP*TP*TP*AP*AP*TP*CP*CP*AP*GP*C)-3') ; 4898.191 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 9 ? ? ? ? 3 water nat water 18.015 104 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DT)(DG)(DG)(DA)(DT)(DT)(DA)(DA)(DT)(DC)(DC)(DA)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCTGGATTAATCCAGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DA n 1 10 DA n 1 11 DT n 1 12 DC n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DC 13 13 13 DC DC A . n A 1 14 DA 14 14 14 DA DA A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DC 16 16 16 DC DC A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id CA _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id CA _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 101 1 CA CA A . C 2 CA 1 102 2 CA CA A . D 2 CA 1 103 3 CA CA A . E 2 CA 1 104 4 CA CA A . F 2 CA 1 105 5 CA CA A . G 2 CA 1 106 6 CA CA A . H 2 CA 1 107 7 CA CA A . I 2 CA 1 108 8 CA CA A . J 2 CA 1 109 9 CA CA A . K 3 HOH 1 201 62 HOH HOH A . K 3 HOH 2 202 99 HOH HOH A . K 3 HOH 3 203 16 HOH HOH A . K 3 HOH 4 204 35 HOH HOH A . K 3 HOH 5 205 49 HOH HOH A . K 3 HOH 6 206 101 HOH HOH A . K 3 HOH 7 207 41 HOH HOH A . K 3 HOH 8 208 91 HOH HOH A . K 3 HOH 9 209 57 HOH HOH A . K 3 HOH 10 210 31 HOH HOH A . K 3 HOH 11 211 79 HOH HOH A . K 3 HOH 12 212 13 HOH HOH A . K 3 HOH 13 213 93 HOH HOH A . K 3 HOH 14 214 22 HOH HOH A . K 3 HOH 15 215 114 HOH HOH A . K 3 HOH 16 216 110 HOH HOH A . K 3 HOH 17 217 17 HOH HOH A . K 3 HOH 18 218 120 HOH HOH A . K 3 HOH 19 219 7 HOH HOH A . K 3 HOH 20 220 63 HOH HOH A . K 3 HOH 21 221 44 HOH HOH A . K 3 HOH 22 222 18 HOH HOH A . K 3 HOH 23 223 72 HOH HOH A . K 3 HOH 24 224 25 HOH HOH A . K 3 HOH 25 225 73 HOH HOH A . K 3 HOH 26 226 77 HOH HOH A . K 3 HOH 27 227 38 HOH HOH A . K 3 HOH 28 228 46 HOH HOH A . K 3 HOH 29 229 119 HOH HOH A . K 3 HOH 30 230 23 HOH HOH A . K 3 HOH 31 231 32 HOH HOH A . K 3 HOH 32 232 9 HOH HOH A . K 3 HOH 33 233 48 HOH HOH A . K 3 HOH 34 234 10 HOH HOH A . K 3 HOH 35 235 14 HOH HOH A . K 3 HOH 36 236 1 HOH HOH A . K 3 HOH 37 237 75 HOH HOH A . K 3 HOH 38 238 37 HOH HOH A . K 3 HOH 39 239 66 HOH HOH A . K 3 HOH 40 240 86 HOH HOH A . K 3 HOH 41 241 8 HOH HOH A . K 3 HOH 42 242 105 HOH HOH A . K 3 HOH 43 243 34 HOH HOH A . K 3 HOH 44 244 40 HOH HOH A . K 3 HOH 45 245 6 HOH HOH A . K 3 HOH 46 246 20 HOH HOH A . K 3 HOH 47 247 87 HOH HOH A . K 3 HOH 48 248 53 HOH HOH A . K 3 HOH 49 249 50 HOH HOH A . K 3 HOH 50 250 81 HOH HOH A . K 3 HOH 51 251 52 HOH HOH A . K 3 HOH 52 252 24 HOH HOH A . K 3 HOH 53 253 65 HOH HOH A . K 3 HOH 54 254 117 HOH HOH A . K 3 HOH 55 255 36 HOH HOH A . K 3 HOH 56 256 5 HOH HOH A . K 3 HOH 57 257 78 HOH HOH A . K 3 HOH 58 258 33 HOH HOH A . K 3 HOH 59 259 67 HOH HOH A . K 3 HOH 60 260 45 HOH HOH A . K 3 HOH 61 261 97 HOH HOH A . K 3 HOH 62 262 106 HOH HOH A . K 3 HOH 63 263 58 HOH HOH A . K 3 HOH 64 264 116 HOH HOH A . K 3 HOH 65 265 30 HOH HOH A . K 3 HOH 66 266 43 HOH HOH A . K 3 HOH 67 267 3 HOH HOH A . K 3 HOH 68 268 76 HOH HOH A . K 3 HOH 69 269 2 HOH HOH A . K 3 HOH 70 270 26 HOH HOH A . K 3 HOH 71 271 4 HOH HOH A . K 3 HOH 72 272 68 HOH HOH A . K 3 HOH 73 273 54 HOH HOH A . K 3 HOH 74 274 112 HOH HOH A . K 3 HOH 75 275 28 HOH HOH A . K 3 HOH 76 276 80 HOH HOH A . K 3 HOH 77 277 107 HOH HOH A . K 3 HOH 78 278 64 HOH HOH A . K 3 HOH 79 279 83 HOH HOH A . K 3 HOH 80 280 11 HOH HOH A . K 3 HOH 81 281 111 HOH HOH A . K 3 HOH 82 282 69 HOH HOH A . K 3 HOH 83 283 59 HOH HOH A . K 3 HOH 84 284 71 HOH HOH A . K 3 HOH 85 285 19 HOH HOH A . K 3 HOH 86 286 74 HOH HOH A . K 3 HOH 87 287 29 HOH HOH A . K 3 HOH 88 288 55 HOH HOH A . K 3 HOH 89 289 92 HOH HOH A . K 3 HOH 90 290 21 HOH HOH A . K 3 HOH 91 291 109 HOH HOH A . K 3 HOH 92 292 115 HOH HOH A . K 3 HOH 93 293 47 HOH HOH A . K 3 HOH 94 294 85 HOH HOH A . K 3 HOH 95 295 89 HOH HOH A . K 3 HOH 96 296 42 HOH HOH A . K 3 HOH 97 297 108 HOH HOH A . K 3 HOH 98 298 90 HOH HOH A . K 3 HOH 99 299 61 HOH HOH A . K 3 HOH 100 300 12 HOH HOH A . K 3 HOH 101 301 118 HOH HOH A . K 3 HOH 102 302 15 HOH HOH A . K 3 HOH 103 303 94 HOH HOH A . K 3 HOH 104 304 113 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8V5J _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.829 _cell.length_a_esd ? _cell.length_b 38.829 _cell.length_b_esd ? _cell.length_c 159.676 _cell.length_c_esd ? _cell.volume 208488.780 _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8V5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ;R 3 2" ; _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8V5J _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10mM HEPES, pH=8.6, 600mM CaCl2, 36% PEG200 mixed 1:1 with 1mM DNA duplex' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 295 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-03-07 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'vertical DCM' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.751419 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.751419 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-1 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 16.61 _reflns.entry_id 8V5J _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.19 _reflns.d_resolution_low 26.61 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15183 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.28 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 32.38 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.04393 _reflns.pdbx_Rpim_I_all 0.01534 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star 0.999 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.04092 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.19 _reflns_shell.d_res_low 1.233 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 7.18 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1491 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 10.6 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.347 _reflns_shell.pdbx_Rpim_I_all 0.1055 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.98 _reflns_shell.pdbx_CC_star 0.995 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 98.42 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.3303 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 25.11 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8V5J _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.19 _refine.ls_d_res_low 26.61 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15163 _refine.ls_number_reflns_R_free 1515 _refine.ls_number_reflns_R_work 13648 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.30 _refine.ls_percent_reflns_R_free 9.99 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1899 _refine.ls_R_factor_R_free 0.2102 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1875 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.4651 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1034 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.19 _refine_hist.d_res_low 26.61 _refine_hist.number_atoms_solvent 104 _refine_hist.number_atoms_total 438 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 325 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0111 ? 364 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.3398 ? 560 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0677 ? 63 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0219 ? 16 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 33.7019 ? 156 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.19 1.23 . . 137 1226 98.41 . . . . 0.1727 . . . . . . . . . . . 0.2268 'X-RAY DIFFRACTION' 1.23 1.27 . . 135 1218 98.69 . . . . 0.1510 . . . . . . . . . . . 0.1794 'X-RAY DIFFRACTION' 1.27 1.32 . . 135 1214 98.54 . . . . 0.1574 . . . . . . . . . . . 0.1833 'X-RAY DIFFRACTION' 1.32 1.38 . . 138 1239 98.92 . . . . 0.1596 . . . . . . . . . . . 0.2092 'X-RAY DIFFRACTION' 1.38 1.46 . . 135 1217 98.98 . . . . 0.1581 . . . . . . . . . . . 0.1938 'X-RAY DIFFRACTION' 1.46 1.55 . . 138 1245 99.28 . . . . 0.1513 . . . . . . . . . . . 0.1760 'X-RAY DIFFRACTION' 1.55 1.67 . . 137 1231 98.42 . . . . 0.1445 . . . . . . . . . . . 0.1911 'X-RAY DIFFRACTION' 1.67 1.83 . . 137 1250 99.07 . . . . 0.1397 . . . . . . . . . . . 0.1739 'X-RAY DIFFRACTION' 1.83 2.10 . . 141 1271 99.58 . . . . 0.1749 . . . . . . . . . . . 0.1824 'X-RAY DIFFRACTION' 2.10 2.65 . . 143 1276 99.86 . . . . 0.1982 . . . . . . . . . . . 0.2055 'X-RAY DIFFRACTION' 2.65 26.61 . . 139 1261 92.17 . . . . 0.2188 . . . . . . . . . . . 0.2436 # _struct.entry_id 8V5J _struct.title ;The Native DNA 16-mer Sequence 5'-GCTGGATTAATCCAGC-3 ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8V5J _struct_keywords.text 'DNA duplex, DNA, 16-mer, Self-complementary' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8V5J _struct_ref.pdbx_db_accession 8V5J _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8V5J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8V5J _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K 1 2 A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 17_435 x-y-2/3,-y-4/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -44.8358672047 0.0000000000 0.0000000000 -1.0000000000 106.4506666667 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 2 OP1 ? ? ? 1_555 G CA . CA ? ? A DC 2 A CA 106 1_555 ? ? ? ? ? ? ? 2.416 ? ? metalc2 metalc ? ? A DC 2 OP1 ? ? ? 1_555 G CA . CA ? ? A DC 2 A CA 106 2_455 ? ? ? ? ? ? ? 2.409 ? ? metalc3 metalc ? ? A DA 6 OP1 ? ? ? 1_555 C CA . CA ? ? A DA 6 A CA 102 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc4 metalc ? ? A DA 6 OP1 ? ? ? 1_555 C CA . CA ? ? A DA 6 A CA 102 2_445 ? ? ? ? ? ? ? 2.275 ? ? metalc5 metalc ? ? A DA 6 OP2 ? ? ? 1_555 D CA . CA ? ? A DA 6 A CA 103 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc6 metalc ? ? A DA 6 OP2 ? ? ? 1_555 D CA . CA ? ? A DA 6 A CA 103 3_545 ? ? ? ? ? ? ? 2.274 ? ? metalc7 metalc ? ? A DG 15 OP1 ? ? ? 1_555 E CA . CA ? ? A DG 15 A CA 104 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc8 metalc ? ? A DC 16 OP1 ? ? ? 1_555 F CA . CA ? ? A DC 16 A CA 105 1_555 ? ? ? ? ? ? ? 2.246 ? ? metalc9 metalc ? ? A DC 16 OP1 ? ? ? 1_555 F CA . CA ? ? A DC 16 A CA 105 2_445 ? ? ? ? ? ? ? 2.277 ? ? metalc10 metalc ? ? A DC 16 OP2 ? ? ? 1_555 H CA . CA ? ? A DC 16 A CA 107 1_555 ? ? ? ? ? ? ? 2.761 ? ? metalc11 metalc ? ? B CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 101 A HOH 236 17_435 ? ? ? ? ? ? ? 2.782 ? ? metalc12 metalc ? ? B CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 101 A HOH 240 1_555 ? ? ? ? ? ? ? 2.807 ? ? metalc13 metalc ? ? B CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 101 A HOH 290 17_435 ? ? ? ? ? ? ? 2.699 ? ? metalc14 metalc ? ? C CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 267 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc15 metalc ? ? C CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 A HOH 267 3_545 ? ? ? ? ? ? ? 2.378 ? ? metalc16 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 269 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc17 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 103 A HOH 269 2_445 ? ? ? ? ? ? ? 2.370 ? ? metalc18 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 203 18_445 ? ? ? ? ? ? ? 2.381 ? ? metalc19 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 236 3_545 ? ? ? ? ? ? ? 2.359 ? ? metalc20 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 258 1_555 ? ? ? ? ? ? ? 2.562 ? ? metalc21 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 270 3_545 ? ? ? ? ? ? ? 2.172 ? ? metalc22 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 271 1_555 ? ? ? ? ? ? ? 2.448 ? ? metalc23 metalc ? ? E CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 A HOH 280 1_555 ? ? ? ? ? ? ? 2.635 ? ? metalc24 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 105 A HOH 256 14_444 ? ? ? ? ? ? ? 2.323 ? ? metalc25 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 252 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc26 metalc ? ? G CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 106 A HOH 252 3_445 ? ? ? ? ? ? ? 2.415 ? ? metalc27 metalc ? ? H CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 107 A HOH 256 14_444 ? ? ? ? ? ? ? 2.673 ? ? metalc28 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 209 1_555 ? ? ? ? ? ? ? 3.101 ? ? metalc29 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 219 1_555 ? ? ? ? ? ? ? 2.297 ? ? metalc30 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 229 18_445 ? ? ? ? ? ? ? 2.464 ? ? metalc31 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 234 17_435 ? ? ? ? ? ? ? 2.561 ? ? metalc32 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 243 18_445 ? ? ? ? ? ? ? 2.004 ? ? metalc33 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 248 17_435 ? ? ? ? ? ? ? 2.813 ? ? metalc34 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 282 1_555 ? ? ? ? ? ? ? 2.745 ? ? metalc35 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 108 A HOH 288 18_445 ? ? ? ? ? ? ? 2.655 ? ? metalc36 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 109 A HOH 224 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc37 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 109 A HOH 228 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc38 metalc ? ? J CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 109 A HOH 272 1_555 ? ? ? ? ? ? ? 2.095 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 16 N3 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 16 O2 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 16 N4 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 15 N1 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 15 O6 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 15 N2 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 14 N1 ? ? A DT 3 A DA 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 14 N6 ? ? A DT 3 A DA 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 12 N3 ? ? A DG 5 A DC 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 12 O2 ? ? A DG 5 A DC 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 12 N4 ? ? A DG 5 A DC 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 11 N3 ? ? A DA 6 A DT 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 11 O4 ? ? A DA 6 A DT 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 10 N1 ? ? A DT 7 A DA 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 10 N6 ? ? A DT 7 A DA 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 9 N1 ? ? A DT 8 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 9 N6 ? ? A DT 8 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 9 A DT 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 9 A DT 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 10 A DT 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 10 A DT 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 11 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 11 A DA 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 11 A DA 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 12 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 12 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 12 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 14 A DT 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 14 A DT 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 OP1 ? A DC 2 ? A DC 2 ? 1_555 0.0 ? 2 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 252 ? 1_555 82.7 ? 3 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 252 ? 1_555 82.7 ? 4 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 252 ? 3_445 175.2 ? 5 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 252 ? 3_445 175.2 ? 6 O ? K HOH . ? A HOH 252 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? K HOH . ? A HOH 252 ? 3_445 92.6 ? 7 OP1 ? A DA 6 ? A DA 6 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 OP1 ? A DA 6 ? A DA 6 ? 1_555 0.0 ? 8 OP1 ? A DA 6 ? A DA 6 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 267 ? 1_555 87.4 ? 9 OP1 ? A DA 6 ? A DA 6 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 267 ? 1_555 87.4 ? 10 OP1 ? A DA 6 ? A DA 6 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 267 ? 3_545 99.3 ? 11 OP1 ? A DA 6 ? A DA 6 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 267 ? 3_545 99.3 ? 12 O ? K HOH . ? A HOH 267 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? K HOH . ? A HOH 267 ? 3_545 86.1 ? 13 OP2 ? A DA 6 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 OP2 ? A DA 6 ? A DA 6 ? 1_555 0.0 ? 14 OP2 ? A DA 6 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 269 ? 1_555 86.4 ? 15 OP2 ? A DA 6 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 269 ? 1_555 86.4 ? 16 OP2 ? A DA 6 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 269 ? 2_445 91.5 ? 17 OP2 ? A DA 6 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 269 ? 2_445 91.5 ? 18 O ? K HOH . ? A HOH 269 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? K HOH . ? A HOH 269 ? 2_445 87.8 ? 19 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 203 ? 18_445 92.2 ? 20 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 236 ? 3_545 175.0 ? 21 O ? K HOH . ? A HOH 203 ? 18_445 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 236 ? 3_545 83.6 ? 22 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 258 ? 1_555 77.9 ? 23 O ? K HOH . ? A HOH 203 ? 18_445 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 258 ? 1_555 70.2 ? 24 O ? K HOH . ? A HOH 236 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 258 ? 1_555 98.1 ? 25 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 270 ? 3_545 98.8 ? 26 O ? K HOH . ? A HOH 203 ? 18_445 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 270 ? 3_545 83.3 ? 27 O ? K HOH . ? A HOH 236 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 270 ? 3_545 83.3 ? 28 O ? K HOH . ? A HOH 258 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 270 ? 3_545 153.0 ? 29 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 271 ? 1_555 86.9 ? 30 O ? K HOH . ? A HOH 203 ? 18_445 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 271 ? 1_555 163.8 ? 31 O ? K HOH . ? A HOH 236 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 271 ? 1_555 97.9 ? 32 O ? K HOH . ? A HOH 258 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 271 ? 1_555 125.1 ? 33 O ? K HOH . ? A HOH 270 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 271 ? 1_555 80.9 ? 34 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 280 ? 1_555 99.3 ? 35 O ? K HOH . ? A HOH 203 ? 18_445 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 280 ? 1_555 131.6 ? 36 O ? K HOH . ? A HOH 236 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 280 ? 1_555 81.7 ? 37 O ? K HOH . ? A HOH 258 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 280 ? 1_555 66.7 ? 38 O ? K HOH . ? A HOH 270 ? 3_545 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 280 ? 1_555 139.5 ? 39 O ? K HOH . ? A HOH 271 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? K HOH . ? A HOH 280 ? 1_555 64.3 ? 40 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 OP1 ? A DC 16 ? A DC 16 ? 1_555 0.0 ? 41 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 256 ? 14_444 95.3 ? 42 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? K HOH . ? A HOH 256 ? 14_444 95.3 ? 43 OP2 ? A DC 16 ? A DC 16 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? K HOH . ? A HOH 256 ? 14_444 89.7 ? 44 O ? K HOH . ? A HOH 236 ? 17_435 CA ? B CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 240 ? 1_555 110.6 ? 45 O ? K HOH . ? A HOH 236 ? 17_435 CA ? B CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 290 ? 17_435 99.1 ? 46 O ? K HOH . ? A HOH 240 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? K HOH . ? A HOH 290 ? 17_435 88.9 ? 47 O ? K HOH . ? A HOH 209 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 219 ? 1_555 80.2 ? 48 O ? K HOH . ? A HOH 209 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 229 ? 18_445 64.8 ? 49 O ? K HOH . ? A HOH 219 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 229 ? 18_445 131.7 ? 50 O ? K HOH . ? A HOH 209 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 234 ? 17_435 134.1 ? 51 O ? K HOH . ? A HOH 219 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 234 ? 17_435 74.5 ? 52 O ? K HOH . ? A HOH 229 ? 18_445 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 234 ? 17_435 153.6 ? 53 O ? K HOH . ? A HOH 209 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 243 ? 18_445 95.7 ? 54 O ? K HOH . ? A HOH 219 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 243 ? 18_445 134.1 ? 55 O ? K HOH . ? A HOH 229 ? 18_445 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 243 ? 18_445 83.8 ? 56 O ? K HOH . ? A HOH 234 ? 17_435 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 243 ? 18_445 76.6 ? 57 O ? K HOH . ? A HOH 209 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 248 ? 17_435 57.3 ? 58 O ? K HOH . ? A HOH 219 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 248 ? 17_435 98.9 ? 59 O ? K HOH . ? A HOH 229 ? 18_445 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 248 ? 17_435 89.6 ? 60 O ? K HOH . ? A HOH 234 ? 17_435 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 248 ? 17_435 89.4 ? 61 O ? K HOH . ? A HOH 243 ? 18_445 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 248 ? 17_435 45.9 ? 62 O ? K HOH . ? A HOH 209 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 282 ? 1_555 111.9 ? 63 O ? K HOH . ? A HOH 219 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 282 ? 1_555 76.5 ? 64 O ? K HOH . ? A HOH 229 ? 18_445 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 282 ? 1_555 86.3 ? 65 O ? K HOH . ? A HOH 234 ? 17_435 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 282 ? 1_555 98.7 ? 66 O ? K HOH . ? A HOH 243 ? 18_445 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 282 ? 1_555 143.2 ? 67 O ? K HOH . ? A HOH 248 ? 17_435 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 282 ? 1_555 169.1 ? 68 O ? K HOH . ? A HOH 209 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 288 ? 18_445 142.0 ? 69 O ? K HOH . ? A HOH 219 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 288 ? 18_445 130.7 ? 70 O ? K HOH . ? A HOH 229 ? 18_445 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 288 ? 18_445 77.2 ? 71 O ? K HOH . ? A HOH 234 ? 17_435 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 288 ? 18_445 81.4 ? 72 O ? K HOH . ? A HOH 243 ? 18_445 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 288 ? 18_445 77.9 ? 73 O ? K HOH . ? A HOH 248 ? 17_435 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 288 ? 18_445 123.4 ? 74 O ? K HOH . ? A HOH 282 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? K HOH . ? A HOH 288 ? 18_445 65.4 ? 75 O ? K HOH . ? A HOH 224 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 228 ? 1_555 82.9 ? 76 O ? K HOH . ? A HOH 224 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 272 ? 1_555 75.9 ? 77 O ? K HOH . ? A HOH 228 ? 1_555 CA ? J CA . ? A CA 109 ? 1_555 O ? K HOH . ? A HOH 272 ? 1_555 117.5 ? # _pdbx_entry_details.entry_id 8V5J _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 243 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 248 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_545 _pdbx_validate_symm_contact.dist 2.02 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.16 108.30 4.86 0.30 N 2 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.30 108.30 2.00 0.30 N 3 1 "O5'" A DC 16 ? ? P A DC 16 ? ? OP2 A DC 16 ? ? 99.15 105.70 -6.55 0.90 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 102 ? C CA . 2 1 A CA 103 ? D CA . 3 1 A CA 105 ? F CA . 4 1 A CA 106 ? G CA . 5 1 A HOH 245 ? K HOH . 6 1 A HOH 250 ? K HOH . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x-y,-y,-z 5 -x,-x+y,-z 6 y,x,-z 7 x+1/3,y+2/3,z+2/3 8 -y+1/3,x-y+2/3,z+2/3 9 -x+y+1/3,-x+2/3,z+2/3 10 x-y+1/3,-y+2/3,-z+2/3 11 -x+1/3,-x+y+2/3,-z+2/3 12 y+1/3,x+2/3,-z+2/3 13 x+2/3,y+1/3,z+1/3 14 -y+2/3,x-y+1/3,z+1/3 15 -x+y+2/3,-x+1/3,z+1/3 16 x-y+2/3,-y+1/3,-z+1/3 17 -x+2/3,-x+y+1/3,-z+1/3 18 y+2/3,x+1/3,-z+1/3 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 304 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.25 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 8V5J _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 16 17_435 -0.281 -0.068 0.024 -1.768 -7.157 1.738 1 A_DG1:DC16_A A 1 ? A 16 ? 19 1 1 A DC 2 1_555 A DG 15 17_435 0.167 -0.150 0.335 -6.640 -9.062 -2.984 2 A_DC2:DG15_A A 2 ? A 15 ? 19 1 1 A DT 3 1_555 A DA 14 17_435 -0.101 -0.062 0.143 -4.010 -13.626 -0.725 3 A_DT3:DA14_A A 3 ? A 14 ? 20 1 1 A DG 4 1_555 A DC 13 17_435 -0.226 -0.180 -0.199 -7.490 -0.145 -2.801 4 A_DG4:DC13_A A 4 ? A 13 ? 19 1 1 A DG 5 1_555 A DC 12 17_435 -0.050 -0.138 -0.051 5.186 -8.032 1.188 5 A_DG5:DC12_A A 5 ? A 12 ? 19 1 1 A DA 6 1_555 A DT 11 17_435 0.066 -0.143 -0.026 4.341 -12.486 1.787 6 A_DA6:DT11_A A 6 ? A 11 ? 20 1 1 A DT 7 1_555 A DA 10 17_435 -0.022 -0.167 0.075 4.379 -13.692 2.847 7 A_DT7:DA10_A A 7 ? A 10 ? 20 1 1 A DT 8 1_555 A DA 9 17_435 -0.104 -0.140 0.021 4.864 -12.179 3.019 8 A_DT8:DA9_A A 8 ? A 9 ? 20 1 1 A DA 9 1_555 A DT 8 17_435 0.104 -0.140 0.021 -4.864 -12.179 3.019 9 A_DA9:DT8_A A 9 ? A 8 ? 20 1 1 A DA 10 1_555 A DT 7 17_435 0.022 -0.167 0.075 -4.379 -13.692 2.847 10 A_DA10:DT7_A A 10 ? A 7 ? 20 1 1 A DT 11 1_555 A DA 6 17_435 -0.066 -0.143 -0.026 -4.341 -12.486 1.787 11 A_DT11:DA6_A A 11 ? A 6 ? 20 1 1 A DC 12 1_555 A DG 5 17_435 0.050 -0.138 -0.051 -5.186 -8.032 1.188 12 A_DC12:DG5_A A 12 ? A 5 ? 19 1 1 A DC 13 1_555 A DG 4 17_435 0.226 -0.180 -0.199 7.490 -0.145 -2.801 13 A_DC13:DG4_A A 13 ? A 4 ? 19 1 1 A DA 14 1_555 A DT 3 17_435 0.101 -0.062 0.143 4.010 -13.626 -0.725 14 A_DA14:DT3_A A 14 ? A 3 ? 20 1 1 A DG 15 1_555 A DC 2 17_435 -0.167 -0.150 0.335 6.640 -9.062 -2.984 15 A_DG15:DC2_A A 15 ? A 2 ? 19 1 1 A DC 16 1_555 A DG 1 17_435 0.281 -0.068 0.024 1.768 -7.157 1.738 16 A_DC16:DG1_A A 16 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 16 17_435 A DC 2 1_555 A DG 15 17_435 -1.020 -0.584 3.347 -3.852 -0.323 32.971 -0.965 1.112 3.446 -0.567 6.758 33.190 1 AA_DG1DC2:DG15DC16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A DC 2 1_555 A DG 15 17_435 A DT 3 1_555 A DA 14 17_435 -0.500 -0.078 3.223 1.802 2.502 28.704 -0.703 1.397 3.168 5.028 -3.622 28.866 2 AA_DC2DT3:DA14DG15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A DT 3 1_555 A DA 14 17_435 A DG 4 1_555 A DC 13 17_435 0.522 1.061 3.450 3.683 -0.418 43.681 1.463 -0.329 3.471 -0.560 -4.939 43.830 3 AA_DT3DG4:DC13DA14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A DG 4 1_555 A DC 13 17_435 A DG 5 1_555 A DC 12 17_435 0.934 0.018 3.171 -1.708 5.186 20.904 -1.938 -3.147 3.001 13.989 4.607 21.598 4 AA_DG4DG5:DC12DC13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A DG 5 1_555 A DC 12 17_435 A DA 6 1_555 A DT 11 17_435 -1.020 0.273 3.324 -2.761 -0.280 41.028 0.420 1.145 3.381 -0.400 3.933 41.118 5 AA_DG5DA6:DT11DC12_AA A 5 ? A 12 ? A 6 ? A 11 ? 1 A DA 6 1_555 A DT 11 17_435 A DT 7 1_555 A DA 10 17_435 0.359 -0.568 3.257 -1.060 -1.359 31.162 -0.799 -0.868 3.264 -2.527 1.971 31.208 6 AA_DA6DT7:DA10DT11_AA A 6 ? A 11 ? A 7 ? A 10 ? 1 A DT 7 1_555 A DA 10 17_435 A DT 8 1_555 A DA 9 17_435 -0.041 -0.222 3.227 0.720 -2.530 35.828 -0.003 0.168 3.233 -4.106 -1.168 35.921 7 AA_DT7DT8:DA9DA10_AA A 7 ? A 10 ? A 8 ? A 9 ? 1 A DT 8 1_555 A DA 9 17_435 A DA 9 1_555 A DT 8 17_435 0.000 0.096 3.535 0.000 -1.635 41.052 0.329 0.000 3.529 -2.330 0.000 41.083 8 AA_DT8DA9:DT8DA9_AA A 8 ? A 9 ? A 9 ? A 8 ? 1 A DA 9 1_555 A DT 8 17_435 A DA 10 1_555 A DT 7 17_435 0.041 -0.222 3.227 -0.720 -2.530 35.828 -0.003 -0.168 3.233 -4.106 1.168 35.921 9 AA_DA9DA10:DT7DT8_AA A 9 ? A 8 ? A 10 ? A 7 ? 1 A DA 10 1_555 A DT 7 17_435 A DT 11 1_555 A DA 6 17_435 -0.359 -0.568 3.257 1.060 -1.359 31.162 -0.799 0.868 3.264 -2.527 -1.971 31.208 10 AA_DA10DT11:DA6DT7_AA A 10 ? A 7 ? A 11 ? A 6 ? 1 A DT 11 1_555 A DA 6 17_435 A DC 12 1_555 A DG 5 17_435 1.020 0.273 3.324 2.761 -0.280 41.028 0.420 -1.145 3.381 -0.400 -3.933 41.118 11 AA_DT11DC12:DG5DA6_AA A 11 ? A 6 ? A 12 ? A 5 ? 1 A DC 12 1_555 A DG 5 17_435 A DC 13 1_555 A DG 4 17_435 -0.934 0.018 3.171 1.708 5.186 20.904 -1.938 3.147 3.001 13.989 -4.607 21.598 12 AA_DC12DC13:DG4DG5_AA A 12 ? A 5 ? A 13 ? A 4 ? 1 A DC 13 1_555 A DG 4 17_435 A DA 14 1_555 A DT 3 17_435 -0.522 1.061 3.450 -3.683 -0.418 43.681 1.463 0.329 3.471 -0.560 4.939 43.830 13 AA_DC13DA14:DT3DG4_AA A 13 ? A 4 ? A 14 ? A 3 ? 1 A DA 14 1_555 A DT 3 17_435 A DG 15 1_555 A DC 2 17_435 0.500 -0.078 3.223 -1.802 2.502 28.704 -0.703 -1.397 3.168 5.028 3.622 28.866 14 AA_DA14DG15:DC2DT3_AA A 14 ? A 3 ? A 15 ? A 2 ? 1 A DG 15 1_555 A DC 2 17_435 A DC 16 1_555 A DG 1 17_435 1.020 -0.584 3.347 3.852 -0.323 32.971 -0.965 -1.112 3.446 -0.567 -6.758 33.190 15 AA_DG15DC16:DG1DC2_AA A 15 ? A 2 ? A 16 ? A 1 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM111749 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8F94 _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'R 3 2 :H' _space_group.name_Hall ;R 3 2" ; _space_group.IT_number 155 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 8V5J _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.025754 _atom_sites.fract_transf_matrix[1][2] 0.014869 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029738 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006263 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 8.75937 8.41257 2.76798 ? 9.64476 0.47514 97.39057 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #