HEADER VIRAL PROTEIN 30-NOV-23 8V5Q TITLE VARICELLA ZOSTER VIRUS (VZV) GLYCOPROTEIN E (GE) GI BINDING DOMAIN IN TITLE 2 COMPLEX WITH HUMAN FAB 1E3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 1E3 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB 1E3 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ENVELOPE GLYCOPROTEIN E; COMPND 11 CHAIN: G; COMPND 12 FRAGMENT: GL BINDING DOMAIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HUMAN ALPHAHERPESVIRUS 3; SOURCE 17 ORGANISM_COMMON: VARICELLA-ZOSTER VIRUS; SOURCE 18 ORGANISM_TAXID: 10335; SOURCE 19 GENE: HHV3_E_SVETAGP69; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS VARICELLA ZOSTER VIRUS, VZV, GE, GLYCOPROTEIN E, GI BINDING DOMAIN, KEYWDS 2 FAB, 1E3, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.HOLZAPFEL,N.SERAJ,W.HARSHBARGER REVDAT 1 11-DEC-24 8V5Q 0 JRNL AUTH W.D.HARSHBARGER,G.HOLZAPFEL,N.SERAJ,S.TIAN,C.CHESTERMAN, JRNL AUTH 2 Z.FU,Y.PAN,C.HARELSON,D.PENG,Y.HUANG,S.CHANDRAMOULI, JRNL AUTH 3 E.MALITO,M.J.BOTTOMLEY,J.WILLIAMS JRNL TITL STRUCTURES OF THE VARICELLA ZOSTER VIRUS GLYCOPROTEIN E AND JRNL TITL 2 EPITOPE MAPPING OF VACCINE-ELICITED ANTIBODIES. JRNL REF VACCINES (BASEL) V. 12 2024 JRNL REFN ESSN 2076-393X JRNL PMID 39460278 JRNL DOI 10.3390/VACCINES12101111 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 61391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7200 - 4.5900 1.00 4522 153 0.1920 0.1684 REMARK 3 2 4.5800 - 3.6400 1.00 4362 146 0.1781 0.1862 REMARK 3 3 3.6400 - 3.1800 1.00 4277 144 0.2157 0.2632 REMARK 3 4 3.1800 - 2.8900 1.00 4299 145 0.2455 0.2678 REMARK 3 5 2.8900 - 2.6800 1.00 4230 140 0.2425 0.2695 REMARK 3 6 2.6800 - 2.5200 1.00 4283 145 0.2449 0.2446 REMARK 3 7 2.5200 - 2.4000 1.00 4237 142 0.2464 0.3027 REMARK 3 8 2.4000 - 2.2900 1.00 4214 141 0.2481 0.2418 REMARK 3 9 2.2900 - 2.2100 0.99 4201 140 0.2935 0.2898 REMARK 3 10 2.2100 - 2.1300 1.00 4198 141 0.2465 0.2535 REMARK 3 11 2.1300 - 2.0600 1.00 4194 141 0.2715 0.2691 REMARK 3 12 2.0600 - 2.0000 0.99 4213 142 0.2864 0.2569 REMARK 3 13 2.0000 - 1.9500 0.99 4147 140 0.3111 0.3057 REMARK 3 14 1.9500 - 1.9000 0.95 4019 135 0.4074 0.4222 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 NULL REMARK 3 ANGLE : 1.219 NULL REMARK 3 CHIRALITY : 0.077 669 REMARK 3 PLANARITY : 0.014 750 REMARK 3 DIHEDRAL : 15.593 1565 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8V5Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 3.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS REMARK 200 DATA SCALING SOFTWARE : AUTOPROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 89.927 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.18400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID, PH 3.6 ; 1.8M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.92700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.92700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.31050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 96.87750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.31050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 96.87750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.92700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.31050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 96.87750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.92700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.31050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 96.87750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 139 REMARK 465 LYS H 140 REMARK 465 SER H 141 REMARK 465 THR H 142 REMARK 465 SER H 143 REMARK 465 GLY H 144 REMARK 465 CYS H 227 REMARK 465 ASP H 228 REMARK 465 LYS H 229 REMARK 465 GLY H 230 REMARK 465 SER H 231 REMARK 465 GLU H 232 REMARK 465 ASN H 233 REMARK 465 LEU H 234 REMARK 465 TYR H 235 REMARK 465 PHE H 236 REMARK 465 GLN H 237 REMARK 465 GLY H 238 REMARK 465 SER H 239 REMARK 465 HIS H 240 REMARK 465 HIS H 241 REMARK 465 HIS H 242 REMARK 465 HIS H 243 REMARK 465 HIS H 244 REMARK 465 HIS H 245 REMARK 465 GLU L 212 REMARK 465 CYS L 213 REMARK 465 ILE G 116 REMARK 465 VAL G 117 REMARK 465 ASN G 118 REMARK 465 VAL G 119 REMARK 465 ASP G 120 REMARK 465 GLN G 121 REMARK 465 ARG G 122 REMARK 465 GLN G 123 REMARK 465 TYR G 124 REMARK 465 GLY G 125 REMARK 465 ASP G 126 REMARK 465 VAL G 127 REMARK 465 PHE G 128 REMARK 465 LYS G 129 REMARK 465 GLY G 130 REMARK 465 ASP G 131 REMARK 465 LEU G 132 REMARK 465 ASN G 133 REMARK 465 PRO G 134 REMARK 465 LYS G 135 REMARK 465 PRO G 136 REMARK 465 GLN G 137 REMARK 465 GLY G 138 REMARK 465 GLN G 139 REMARK 465 THR G 177 REMARK 465 CYS G 178 REMARK 465 THR G 179 REMARK 465 GLY G 180 REMARK 465 ASP G 181 REMARK 465 ALA G 182 REMARK 465 ALA G 183 REMARK 465 PRO G 184 REMARK 465 ALA G 185 REMARK 465 ILE G 186 REMARK 465 GLN G 187 REMARK 465 HIS G 188 REMARK 465 ILE G 189 REMARK 465 CYS G 190 REMARK 465 LEU G 191 REMARK 465 LYS G 192 REMARK 465 HIS G 193 REMARK 465 THR G 194 REMARK 465 THR G 195 REMARK 465 CYS G 196 REMARK 465 PHE G 197 REMARK 465 GLN G 198 REMARK 465 ASP G 199 REMARK 465 VAL G 200 REMARK 465 VAL G 201 REMARK 465 VAL G 202 REMARK 465 ASP G 203 REMARK 465 VAL G 204 REMARK 465 ASP G 205 REMARK 465 CYS G 206 REMARK 465 ALA G 207 REMARK 465 GLU G 208 REMARK 465 ASN G 209 REMARK 465 THR G 210 REMARK 465 LYS G 211 REMARK 465 GLY G 224 REMARK 465 LYS G 225 REMARK 465 LYS G 226 REMARK 465 GLU G 227 REMARK 465 THR G 295 REMARK 465 ARG G 296 REMARK 465 ASN G 297 REMARK 465 PRO G 298 REMARK 465 THR G 299 REMARK 465 PRO G 300 REMARK 465 ALA G 301 REMARK 465 VAL G 302 REMARK 465 THR G 303 REMARK 465 PRO G 304 REMARK 465 GLN G 305 REMARK 465 GLU G 306 REMARK 465 ASN G 307 REMARK 465 LEU G 308 REMARK 465 TYR G 309 REMARK 465 PHE G 310 REMARK 465 GLN G 311 REMARK 465 GLY G 312 REMARK 465 HIS G 313 REMARK 465 HIS G 314 REMARK 465 HIS G 315 REMARK 465 HIS G 316 REMARK 465 HIS G 317 REMARK 465 HIS G 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU G 176 CG CD1 CD2 REMARK 470 GLU G 212 CG CD OE1 OE2 REMARK 470 LYS G 294 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -11.83 81.26 REMARK 500 SER H 30 21.90 -155.40 REMARK 500 ASN H 32 8.30 -65.45 REMARK 500 SER H 107 -160.30 60.26 REMARK 500 SER H 126 159.71 71.29 REMARK 500 ARG L 30 -130.61 51.73 REMARK 500 ALA L 51 -32.42 72.53 REMARK 500 SER L 52 -1.85 -140.79 REMARK 500 SER L 77 79.84 -151.11 REMARK 500 ARG L 93 -166.75 -125.93 REMARK 500 THR L 94 119.06 -39.57 REMARK 500 ARG L 210 153.30 161.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 93 0.09 SIDE CHAIN REMARK 500 ARG L 210 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 456 DISTANCE = 6.12 ANGSTROMS DBREF 8V5Q H 1 245 PDB 8V5Q 8V5Q 1 245 DBREF 8V5Q L 1 213 PDB 8V5Q 8V5Q 1 213 DBREF 8V5Q G 116 305 UNP A6XEF7 A6XEF7_HHV3 184 373 SEQADV 8V5Q GLU G 306 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q ASN G 307 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q LEU G 308 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q TYR G 309 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q PHE G 310 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q GLN G 311 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q GLY G 312 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q HIS G 313 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q HIS G 314 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q HIS G 315 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q HIS G 316 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q HIS G 317 UNP A6XEF7 EXPRESSION TAG SEQADV 8V5Q HIS G 318 UNP A6XEF7 EXPRESSION TAG SEQRES 1 H 245 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 245 PRO SER GLN THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 245 GLY SER ILE SER SER ASN ASP TYR TYR TRP THR TRP ILE SEQRES 4 H 245 ARG GLN SER PRO GLY LYS GLY LEU GLU TRP ILE GLY PHE SEQRES 5 H 245 ILE SER TYR ASN GLY ASP THR TYR TYR ASN PRO SER LEU SEQRES 6 H 245 LYS ARG ARG GLY THR ILE SER VAL ASP THR SER LYS ILE SEQRES 7 H 245 GLN PHE SER LEU ARG LEU SER SER VAL THR ALA ALA ASP SEQRES 8 H 245 THR ALA VAL TYR TYR CYS ALA ARG VAL ARG THR SER SER SEQRES 9 H 245 THR THR SER TYR TYR PHE ASP TYR TRP GLY GLN GLY THR SEQRES 10 H 245 LEU VAL THR VAL SER SER ALA ALA SER THR LYS GLY PRO SEQRES 11 H 245 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 245 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 245 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 245 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 245 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 245 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 245 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 H 245 VAL GLU PRO LYS SER CYS ASP LYS GLY SER GLU ASN LEU SEQRES 19 H 245 TYR PHE GLN GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 L 213 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 213 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 213 GLN GLY ILE ARG ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY LYS ALA PRO MET LEU LEU ILE TYR GLY ALA SER SEQRES 5 L 213 SER LEU GLN ASN GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 213 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 213 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 L 213 TYR ARG THR LEU THR PHE GLY PRO GLY THR LYS VAL ASP SEQRES 9 L 213 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 213 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 L 213 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 213 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 L 213 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 213 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 L 213 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 L 213 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 213 ASN ARG GLY GLU CYS SEQRES 1 G 203 ILE VAL ASN VAL ASP GLN ARG GLN TYR GLY ASP VAL PHE SEQRES 2 G 203 LYS GLY ASP LEU ASN PRO LYS PRO GLN GLY GLN ARG LEU SEQRES 3 G 203 ILE GLU VAL SER VAL GLU GLU ASN HIS PRO PHE THR LEU SEQRES 4 G 203 ARG ALA PRO ILE GLN ARG ILE TYR GLY VAL ARG TYR THR SEQRES 5 G 203 GLU THR TRP SER PHE LEU PRO SER LEU THR CYS THR GLY SEQRES 6 G 203 ASP ALA ALA PRO ALA ILE GLN HIS ILE CYS LEU LYS HIS SEQRES 7 G 203 THR THR CYS PHE GLN ASP VAL VAL VAL ASP VAL ASP CYS SEQRES 8 G 203 ALA GLU ASN THR LYS GLU ASP GLN LEU ALA GLU ILE SER SEQRES 9 G 203 TYR ARG PHE GLN GLY LYS LYS GLU ALA ASP GLN PRO TRP SEQRES 10 G 203 ILE VAL VAL ASN THR SER THR LEU PHE ASP GLU LEU GLU SEQRES 11 G 203 LEU ASP PRO PRO GLU ILE GLU PRO GLY VAL LEU LYS VAL SEQRES 12 G 203 LEU ARG THR GLU LYS GLN TYR LEU GLY VAL TYR ILE TRP SEQRES 13 G 203 ASN MET ARG GLY SER ASP GLY THR SER THR TYR ALA THR SEQRES 14 G 203 PHE LEU VAL THR TRP LYS GLY ASP GLU LYS THR ARG ASN SEQRES 15 G 203 PRO THR PRO ALA VAL THR PRO GLN GLU ASN LEU TYR PHE SEQRES 16 G 203 GLN GLY HIS HIS HIS HIS HIS HIS HET PEG H 301 7 HET PEG H 302 7 HET SO4 G 401 5 HET SO4 G 402 5 HET PEG G 403 7 HET PEG G 404 7 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION FORMUL 4 PEG 4(C4 H10 O3) FORMUL 6 SO4 2(O4 S 2-) FORMUL 10 HOH *177(H2 O) HELIX 1 AA1 PRO H 63 LYS H 66 5 4 HELIX 2 AA2 THR H 88 THR H 92 5 5 HELIX 3 AA3 SER H 167 ALA H 169 5 3 HELIX 4 AA4 SER H 198 GLY H 201 5 4 HELIX 5 AA5 LYS H 212 ASN H 215 5 4 HELIX 6 AA6 GLN L 79 PHE L 83 5 5 HELIX 7 AA7 SER L 120 LYS L 125 1 6 HELIX 8 AA8 LYS L 182 LYS L 187 1 6 HELIX 9 AA9 THR G 239 LEU G 244 1 6 HELIX 10 AB1 GLU G 262 TYR G 265 5 4 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA1 4 GLN H 79 LEU H 84 -1 O PHE H 80 N CYS H 22 SHEET 4 AA1 4 GLY H 69 ASP H 74 -1 N ASP H 74 O GLN H 79 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 117 VAL H 121 1 O THR H 120 N VAL H 12 SHEET 3 AA2 6 ALA H 93 ARG H 101 -1 N TYR H 95 O THR H 117 SHEET 4 AA2 6 TYR H 35 SER H 42 -1 N ILE H 39 O TYR H 96 SHEET 5 AA2 6 GLY H 46 ILE H 53 -1 O GLU H 48 N ARG H 40 SHEET 6 AA2 6 THR H 59 TYR H 61 -1 O TYR H 60 N PHE H 52 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 117 VAL H 121 1 O THR H 120 N VAL H 12 SHEET 3 AA3 4 ALA H 93 ARG H 101 -1 N TYR H 95 O THR H 117 SHEET 4 AA3 4 TYR H 109 TRP H 113 -1 O TYR H 112 N ARG H 99 SHEET 1 AA4 4 SER H 131 LEU H 135 0 SHEET 2 AA4 4 THR H 146 TYR H 156 -1 O LEU H 152 N PHE H 133 SHEET 3 AA4 4 TYR H 187 PRO H 196 -1 O VAL H 195 N ALA H 147 SHEET 4 AA4 4 VAL H 174 THR H 176 -1 N HIS H 175 O VAL H 192 SHEET 1 AA5 4 SER H 131 LEU H 135 0 SHEET 2 AA5 4 THR H 146 TYR H 156 -1 O LEU H 152 N PHE H 133 SHEET 3 AA5 4 TYR H 187 PRO H 196 -1 O VAL H 195 N ALA H 147 SHEET 4 AA5 4 VAL H 180 LEU H 181 -1 N VAL H 180 O SER H 188 SHEET 1 AA6 3 THR H 162 TRP H 165 0 SHEET 2 AA6 3 TYR H 205 HIS H 211 -1 O ASN H 210 N THR H 162 SHEET 3 AA6 3 THR H 216 VAL H 222 -1 O THR H 216 N HIS H 211 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA7 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 101 LYS L 106 1 O ASP L 104 N LEU L 11 SHEET 3 AA8 6 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 103 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N ASN L 34 O GLN L 89 SHEET 5 AA8 6 MET L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 101 LYS L 106 1 O ASP L 104 N LEU L 11 SHEET 3 AA9 4 ALA L 84 GLN L 90 -1 N ALA L 84 O VAL L 103 SHEET 4 AA9 4 THR L 96 PHE L 97 -1 O THR L 96 N GLN L 90 SHEET 1 AB1 4 SER L 113 PHE L 117 0 SHEET 2 AB1 4 THR L 128 PHE L 138 -1 O LEU L 134 N PHE L 115 SHEET 3 AB1 4 TYR L 172 SER L 181 -1 O LEU L 180 N ALA L 129 SHEET 4 AB1 4 SER L 158 VAL L 162 -1 N GLN L 159 O THR L 177 SHEET 1 AB2 4 ALA L 152 LEU L 153 0 SHEET 2 AB2 4 LYS L 144 VAL L 149 -1 N VAL L 149 O ALA L 152 SHEET 3 AB2 4 VAL L 190 THR L 196 -1 O ALA L 192 N LYS L 148 SHEET 4 AB2 4 VAL L 204 ASN L 209 -1 O VAL L 204 N VAL L 195 SHEET 1 AB3 6 LEU G 141 VAL G 146 0 SHEET 2 AB3 6 SER G 280 TRP G 289 1 O LEU G 286 N VAL G 144 SHEET 3 AB3 6 GLY G 267 GLY G 275 -1 N GLY G 267 O VAL G 287 SHEET 4 AB3 6 ARG G 165 PRO G 174 -1 N LEU G 173 O VAL G 268 SHEET 5 AB3 6 ASP G 213 ARG G 221 -1 O TYR G 220 N TYR G 166 SHEET 6 AB3 6 ILE G 233 THR G 237 -1 O ILE G 233 N SER G 219 SHEET 1 AB4 3 PHE G 152 ARG G 155 0 SHEET 2 AB4 3 VAL G 255 VAL G 258 -1 O VAL G 258 N PHE G 152 SHEET 3 AB4 3 GLU G 250 GLU G 252 -1 N GLU G 250 O LYS G 257 SSBOND 1 CYS H 22 CYS H 97 1555 1555 2.06 SSBOND 2 CYS H 151 CYS H 207 1555 1555 2.05 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 133 CYS L 193 1555 1555 2.04 CISPEP 1 PHE H 157 PRO H 158 0 -5.07 CISPEP 2 GLU H 159 PRO H 160 0 1.10 CISPEP 3 SER L 7 PRO L 8 0 -2.29 CISPEP 4 TYR L 139 PRO L 140 0 3.14 CRYST1 44.621 193.755 179.854 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022411 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005560 0.00000