HEADER DNA BINDING PROTEIN 01-DEC-23 8V5T TITLE CRYSTAL STRUCTURE OF ALZHEIMERS DISEASE PHOSPHOLIPASE D3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-3' EXONUCLEASE PLD3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLD3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 KEYWDS EXONUCLEASE, ALZHEIMER'S DISEASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.ISHII,S.J.HERMANS,T.L.NERO,M.A.GORMAN,M.W.PARKER REVDAT 1 09-OCT-24 8V5T 0 JRNL AUTH K.ISHII,S.J.HERMANS,M.E.GEORGOPOULOU,T.L.NERO,N.C.HANCOCK, JRNL AUTH 2 G.A.N.CRESPI,M.A.GORMAN,J.H.GOOI,M.W.PARKER JRNL TITL CRYSTAL STRUCTURE OF ALZHEIMER'S DISEASE PHOSPHOLIPASE D3 JRNL TITL 2 PROVIDES A MOLECULAR BASIS FOR UNDERSTANDING ITS NORMAL AND JRNL TITL 3 PATHOLOGICAL FUNCTIONS. JRNL REF FEBS J. 2024 JRNL REFN ISSN 1742-464X JRNL PMID 39325669 JRNL DOI 10.1111/FEBS.17277 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 112535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 5526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9600 - 7.1400 0.95 3567 170 0.1586 0.1652 REMARK 3 2 7.1400 - 5.6700 0.94 3493 180 0.1596 0.1928 REMARK 3 3 5.6700 - 4.9500 0.93 3477 204 0.1444 0.1743 REMARK 3 4 4.9500 - 4.5000 0.92 3453 176 0.1209 0.1287 REMARK 3 5 4.5000 - 4.1800 0.93 3432 190 0.1311 0.1555 REMARK 3 6 4.1800 - 3.9300 0.94 3542 151 0.1358 0.1580 REMARK 3 7 3.9300 - 3.7400 0.93 3421 190 0.1608 0.1823 REMARK 3 8 3.7400 - 3.5700 0.93 3443 197 0.1605 0.2108 REMARK 3 9 3.5700 - 3.4400 0.94 3558 192 0.1887 0.2327 REMARK 3 10 3.4400 - 3.3200 0.93 3477 162 0.1953 0.2012 REMARK 3 11 3.3200 - 3.2100 0.95 3597 156 0.1952 0.2321 REMARK 3 12 3.2100 - 3.1200 0.96 3559 207 0.1981 0.1996 REMARK 3 13 3.1200 - 3.0400 0.96 3482 210 0.2076 0.2538 REMARK 3 14 3.0400 - 2.9700 0.97 3636 201 0.2221 0.2202 REMARK 3 15 2.9700 - 2.9000 0.97 3613 197 0.2294 0.2737 REMARK 3 16 2.9000 - 2.8400 0.97 3645 191 0.2392 0.2758 REMARK 3 17 2.8400 - 2.7800 0.97 3668 168 0.2409 0.2557 REMARK 3 18 2.7800 - 2.7300 0.97 3671 158 0.2400 0.3142 REMARK 3 19 2.7300 - 2.6800 0.97 3696 155 0.2462 0.2764 REMARK 3 20 2.6800 - 2.6300 0.97 3518 211 0.2442 0.2621 REMARK 3 21 2.6300 - 2.5900 0.98 3688 189 0.2581 0.3090 REMARK 3 22 2.5900 - 2.5500 0.97 3626 192 0.2731 0.2959 REMARK 3 23 2.5500 - 2.5100 0.97 3628 191 0.2806 0.2957 REMARK 3 24 2.5100 - 2.4800 0.97 3627 186 0.2875 0.3216 REMARK 3 25 2.4800 - 2.4400 0.97 3635 162 0.2947 0.3451 REMARK 3 26 2.4400 - 2.4100 0.97 3638 176 0.2990 0.3171 REMARK 3 27 2.4100 - 2.3800 0.96 3563 191 0.3203 0.3430 REMARK 3 28 2.3800 - 2.3500 0.94 3515 203 0.3209 0.3460 REMARK 3 29 2.3500 - 2.3300 0.95 3475 183 0.3325 0.3146 REMARK 3 30 2.3300 - 2.3000 0.96 3666 187 0.3522 0.3671 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.321 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6871 REMARK 3 ANGLE : 1.147 9379 REMARK 3 CHIRALITY : 0.055 1048 REMARK 3 PLANARITY : 0.008 1202 REMARK 3 DIHEDRAL : 6.587 964 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8V5T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112535 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULFATE 15% (V/V) REMARK 280 GLYCEROL 25% (W/V) PEG 4000, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 102.56850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.28300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 102.56850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.28300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 MET A 6 REMARK 465 TYR A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 LEU A 10 REMARK 465 LYS A 11 REMARK 465 VAL A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 GLU A 16 REMARK 465 PRO A 17 REMARK 465 ALA A 18 REMARK 465 ASN A 19 REMARK 465 GLU A 20 REMARK 465 LEU A 21 REMARK 465 PRO A 22 REMARK 465 MET A 23 REMARK 465 ASN A 24 REMARK 465 GLU A 25 REMARK 465 ILE A 26 REMARK 465 GLU A 27 REMARK 465 ALA A 28 REMARK 465 TRP A 29 REMARK 465 LYS A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 GLU A 33 REMARK 465 LYS A 34 REMARK 465 LYS A 35 REMARK 465 ALA A 36 REMARK 465 ARG A 37 REMARK 465 TRP A 38 REMARK 465 VAL A 39 REMARK 465 LEU A 40 REMARK 465 LEU A 41 REMARK 465 VAL A 42 REMARK 465 LEU A 43 REMARK 465 ILE A 44 REMARK 465 LEU A 45 REMARK 465 ALA A 46 REMARK 465 VAL A 47 REMARK 465 VAL A 48 REMARK 465 GLY A 49 REMARK 465 PHE A 50 REMARK 465 GLY A 51 REMARK 465 ALA A 52 REMARK 465 LEU A 53 REMARK 465 MET A 54 REMARK 465 THR A 55 REMARK 465 GLN A 56 REMARK 465 LEU A 57 REMARK 465 PHE A 58 REMARK 465 LEU A 59 REMARK 465 TRP A 60 REMARK 465 GLU A 61 REMARK 465 TYR A 62 REMARK 465 GLY A 63 REMARK 465 ASP A 64 REMARK 465 LEU A 65 REMARK 465 HIS A 66 REMARK 465 LEU A 67 REMARK 465 PHE A 68 REMARK 465 GLY A 69 REMARK 465 PRO A 70 REMARK 465 ASN A 71 REMARK 465 ALA A 98 REMARK 465 SER A 99 REMARK 465 THR A 100 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 PRO B 3 REMARK 465 LYS B 4 REMARK 465 LEU B 5 REMARK 465 MET B 6 REMARK 465 TYR B 7 REMARK 465 GLN B 8 REMARK 465 GLU B 9 REMARK 465 LEU B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 PRO B 13 REMARK 465 ALA B 14 REMARK 465 GLU B 15 REMARK 465 GLU B 16 REMARK 465 PRO B 17 REMARK 465 ALA B 18 REMARK 465 ASN B 19 REMARK 465 GLU B 20 REMARK 465 LEU B 21 REMARK 465 PRO B 22 REMARK 465 MET B 23 REMARK 465 ASN B 24 REMARK 465 GLU B 25 REMARK 465 ILE B 26 REMARK 465 GLU B 27 REMARK 465 ALA B 28 REMARK 465 TRP B 29 REMARK 465 LYS B 30 REMARK 465 ALA B 31 REMARK 465 ALA B 32 REMARK 465 GLU B 33 REMARK 465 LYS B 34 REMARK 465 LYS B 35 REMARK 465 ALA B 36 REMARK 465 ARG B 37 REMARK 465 TRP B 38 REMARK 465 VAL B 39 REMARK 465 LEU B 40 REMARK 465 LEU B 41 REMARK 465 VAL B 42 REMARK 465 LEU B 43 REMARK 465 ILE B 44 REMARK 465 LEU B 45 REMARK 465 ALA B 46 REMARK 465 VAL B 47 REMARK 465 VAL B 48 REMARK 465 GLY B 49 REMARK 465 PHE B 50 REMARK 465 GLY B 51 REMARK 465 ALA B 52 REMARK 465 LEU B 53 REMARK 465 MET B 54 REMARK 465 THR B 55 REMARK 465 GLN B 56 REMARK 465 LEU B 57 REMARK 465 PHE B 58 REMARK 465 LEU B 59 REMARK 465 TRP B 60 REMARK 465 GLU B 61 REMARK 465 TYR B 62 REMARK 465 GLY B 63 REMARK 465 ASP B 64 REMARK 465 LEU B 65 REMARK 465 HIS B 66 REMARK 465 LEU B 67 REMARK 465 PHE B 68 REMARK 465 GLY B 69 REMARK 465 PRO B 70 REMARK 465 ASN B 71 REMARK 465 ALA B 98 REMARK 465 SER B 99 REMARK 465 THR B 100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -46.13 -134.49 REMARK 500 THR A 210 -45.11 -137.24 REMARK 500 PRO A 301 171.65 -55.21 REMARK 500 ARG A 413 63.09 61.29 REMARK 500 ARG A 424 -2.05 -140.38 REMARK 500 TRP A 433 69.84 -101.46 REMARK 500 GLU A 440 -33.92 -134.78 REMARK 500 GLN B 174 64.89 -106.22 REMARK 500 THR B 210 -42.06 -138.05 REMARK 500 SER B 320 -58.87 -120.36 REMARK 500 LEU B 330 112.30 -161.71 REMARK 500 ASP B 392 80.52 -153.67 REMARK 500 ARG B 413 60.41 60.13 REMARK 500 TRP B 433 73.35 -102.92 REMARK 500 GLU B 440 -42.11 -133.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 8V5T A 1 490 UNP Q8IV08 PLD3_HUMAN 1 490 DBREF 8V5T B 1 490 UNP Q8IV08 PLD3_HUMAN 1 490 SEQRES 1 A 490 MET LYS PRO LYS LEU MET TYR GLN GLU LEU LYS VAL PRO SEQRES 2 A 490 ALA GLU GLU PRO ALA ASN GLU LEU PRO MET ASN GLU ILE SEQRES 3 A 490 GLU ALA TRP LYS ALA ALA GLU LYS LYS ALA ARG TRP VAL SEQRES 4 A 490 LEU LEU VAL LEU ILE LEU ALA VAL VAL GLY PHE GLY ALA SEQRES 5 A 490 LEU MET THR GLN LEU PHE LEU TRP GLU TYR GLY ASP LEU SEQRES 6 A 490 HIS LEU PHE GLY PRO ASN GLN ARG PRO ALA PRO CYS TYR SEQRES 7 A 490 ASP PRO CYS GLU ALA VAL LEU VAL GLU SER ILE PRO GLU SEQRES 8 A 490 GLY LEU ASP PHE PRO ASN ALA SER THR GLY ASN PRO SER SEQRES 9 A 490 THR SER GLN ALA TRP LEU GLY LEU LEU ALA GLY ALA HIS SEQRES 10 A 490 SER SER LEU ASP ILE ALA SER PHE TYR TRP THR LEU THR SEQRES 11 A 490 ASN ASN ASP THR HIS THR GLN GLU PRO SER ALA GLN GLN SEQRES 12 A 490 GLY GLU GLU VAL LEU ARG GLN LEU GLN THR LEU ALA PRO SEQRES 13 A 490 LYS GLY VAL ASN VAL ARG ILE ALA VAL SER LYS PRO SER SEQRES 14 A 490 GLY PRO GLN PRO GLN ALA ASP LEU GLN ALA LEU LEU GLN SEQRES 15 A 490 SER GLY ALA GLN VAL ARG MET VAL ASP MET GLN LYS LEU SEQRES 16 A 490 THR HIS GLY VAL LEU HIS THR LYS PHE TRP VAL VAL ASP SEQRES 17 A 490 GLN THR HIS PHE TYR LEU GLY SER ALA ASN MET ASP TRP SEQRES 18 A 490 ARG SER LEU THR GLN VAL LYS GLU LEU GLY VAL VAL MET SEQRES 19 A 490 TYR ASN CYS SER CYS LEU ALA ARG ASP LEU THR LYS ILE SEQRES 20 A 490 PHE GLU ALA TYR TRP PHE LEU GLY GLN ALA GLY SER SER SEQRES 21 A 490 ILE PRO SER THR TRP PRO ARG PHE TYR ASP THR ARG TYR SEQRES 22 A 490 ASN GLN GLU THR PRO MET GLU ILE CYS LEU ASN GLY THR SEQRES 23 A 490 PRO ALA LEU ALA TYR LEU ALA SER ALA PRO PRO PRO LEU SEQRES 24 A 490 CYS PRO SER GLY ARG THR PRO ASP LEU LYS ALA LEU LEU SEQRES 25 A 490 ASN VAL VAL ASP ASN ALA ARG SER PHE ILE TYR VAL ALA SEQRES 26 A 490 VAL MET ASN TYR LEU PRO THR LEU GLU PHE SER HIS PRO SEQRES 27 A 490 HIS ARG PHE TRP PRO ALA ILE ASP ASP GLY LEU ARG ARG SEQRES 28 A 490 ALA THR TYR GLU ARG GLY VAL LYS VAL ARG LEU LEU ILE SEQRES 29 A 490 SER CYS TRP GLY HIS SER GLU PRO SER MET ARG ALA PHE SEQRES 30 A 490 LEU LEU SER LEU ALA ALA LEU ARG ASP ASN HIS THR HIS SEQRES 31 A 490 SER ASP ILE GLN VAL LYS LEU PHE VAL VAL PRO ALA ASP SEQRES 32 A 490 GLU ALA GLN ALA ARG ILE PRO TYR ALA ARG VAL ASN HIS SEQRES 33 A 490 ASN LYS TYR MET VAL THR GLU ARG ALA THR TYR ILE GLY SEQRES 34 A 490 THR SER ASN TRP SER GLY ASN TYR PHE THR GLU THR ALA SEQRES 35 A 490 GLY THR SER LEU LEU VAL THR GLN ASN GLY ARG GLY GLY SEQRES 36 A 490 LEU ARG SER GLN LEU GLU ALA ILE PHE LEU ARG ASP TRP SEQRES 37 A 490 ASP SER PRO TYR SER HIS ASP LEU ASP THR SER ALA ASP SEQRES 38 A 490 SER VAL GLY ASN ALA CYS ARG LEU LEU SEQRES 1 B 490 MET LYS PRO LYS LEU MET TYR GLN GLU LEU LYS VAL PRO SEQRES 2 B 490 ALA GLU GLU PRO ALA ASN GLU LEU PRO MET ASN GLU ILE SEQRES 3 B 490 GLU ALA TRP LYS ALA ALA GLU LYS LYS ALA ARG TRP VAL SEQRES 4 B 490 LEU LEU VAL LEU ILE LEU ALA VAL VAL GLY PHE GLY ALA SEQRES 5 B 490 LEU MET THR GLN LEU PHE LEU TRP GLU TYR GLY ASP LEU SEQRES 6 B 490 HIS LEU PHE GLY PRO ASN GLN ARG PRO ALA PRO CYS TYR SEQRES 7 B 490 ASP PRO CYS GLU ALA VAL LEU VAL GLU SER ILE PRO GLU SEQRES 8 B 490 GLY LEU ASP PHE PRO ASN ALA SER THR GLY ASN PRO SER SEQRES 9 B 490 THR SER GLN ALA TRP LEU GLY LEU LEU ALA GLY ALA HIS SEQRES 10 B 490 SER SER LEU ASP ILE ALA SER PHE TYR TRP THR LEU THR SEQRES 11 B 490 ASN ASN ASP THR HIS THR GLN GLU PRO SER ALA GLN GLN SEQRES 12 B 490 GLY GLU GLU VAL LEU ARG GLN LEU GLN THR LEU ALA PRO SEQRES 13 B 490 LYS GLY VAL ASN VAL ARG ILE ALA VAL SER LYS PRO SER SEQRES 14 B 490 GLY PRO GLN PRO GLN ALA ASP LEU GLN ALA LEU LEU GLN SEQRES 15 B 490 SER GLY ALA GLN VAL ARG MET VAL ASP MET GLN LYS LEU SEQRES 16 B 490 THR HIS GLY VAL LEU HIS THR LYS PHE TRP VAL VAL ASP SEQRES 17 B 490 GLN THR HIS PHE TYR LEU GLY SER ALA ASN MET ASP TRP SEQRES 18 B 490 ARG SER LEU THR GLN VAL LYS GLU LEU GLY VAL VAL MET SEQRES 19 B 490 TYR ASN CYS SER CYS LEU ALA ARG ASP LEU THR LYS ILE SEQRES 20 B 490 PHE GLU ALA TYR TRP PHE LEU GLY GLN ALA GLY SER SER SEQRES 21 B 490 ILE PRO SER THR TRP PRO ARG PHE TYR ASP THR ARG TYR SEQRES 22 B 490 ASN GLN GLU THR PRO MET GLU ILE CYS LEU ASN GLY THR SEQRES 23 B 490 PRO ALA LEU ALA TYR LEU ALA SER ALA PRO PRO PRO LEU SEQRES 24 B 490 CYS PRO SER GLY ARG THR PRO ASP LEU LYS ALA LEU LEU SEQRES 25 B 490 ASN VAL VAL ASP ASN ALA ARG SER PHE ILE TYR VAL ALA SEQRES 26 B 490 VAL MET ASN TYR LEU PRO THR LEU GLU PHE SER HIS PRO SEQRES 27 B 490 HIS ARG PHE TRP PRO ALA ILE ASP ASP GLY LEU ARG ARG SEQRES 28 B 490 ALA THR TYR GLU ARG GLY VAL LYS VAL ARG LEU LEU ILE SEQRES 29 B 490 SER CYS TRP GLY HIS SER GLU PRO SER MET ARG ALA PHE SEQRES 30 B 490 LEU LEU SER LEU ALA ALA LEU ARG ASP ASN HIS THR HIS SEQRES 31 B 490 SER ASP ILE GLN VAL LYS LEU PHE VAL VAL PRO ALA ASP SEQRES 32 B 490 GLU ALA GLN ALA ARG ILE PRO TYR ALA ARG VAL ASN HIS SEQRES 33 B 490 ASN LYS TYR MET VAL THR GLU ARG ALA THR TYR ILE GLY SEQRES 34 B 490 THR SER ASN TRP SER GLY ASN TYR PHE THR GLU THR ALA SEQRES 35 B 490 GLY THR SER LEU LEU VAL THR GLN ASN GLY ARG GLY GLY SEQRES 36 B 490 LEU ARG SER GLN LEU GLU ALA ILE PHE LEU ARG ASP TRP SEQRES 37 B 490 ASP SER PRO TYR SER HIS ASP LEU ASP THR SER ALA ASP SEQRES 38 B 490 SER VAL GLY ASN ALA CYS ARG LEU LEU HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 7 SO4 10(O4 S 2-) FORMUL 13 GOL 3(C3 H8 O3) FORMUL 20 HOH *387(H2 O) HELIX 1 AA1 SER A 104 GLY A 115 1 12 HELIX 2 AA2 THR A 130 HIS A 135 1 6 HELIX 3 AA3 GLU A 138 SER A 140 5 3 HELIX 4 AA4 ALA A 141 GLN A 152 1 12 HELIX 5 AA5 GLN A 174 SER A 183 1 10 HELIX 6 AA6 ASP A 191 HIS A 197 1 7 HELIX 7 AA7 TRP A 221 GLN A 226 1 6 HELIX 8 AA8 CYS A 237 GLY A 255 1 19 HELIX 9 AA9 PRO A 266 ASP A 270 5 5 HELIX 10 AB1 PRO A 296 CYS A 300 5 5 HELIX 11 AB2 PRO A 306 ALA A 318 1 13 HELIX 12 AB3 PRO A 343 GLY A 357 1 15 HELIX 13 AB4 SER A 373 ALA A 383 1 11 HELIX 14 AB5 ALA A 405 ILE A 409 5 5 HELIX 15 AB6 GLY A 435 GLU A 440 1 6 HELIX 16 AB7 GLY A 454 SER A 470 1 17 HELIX 17 AB8 SER A 479 VAL A 483 5 5 HELIX 18 AB9 SER B 104 GLY B 115 1 12 HELIX 19 AC1 THR B 130 HIS B 135 1 6 HELIX 20 AC2 GLU B 138 SER B 140 5 3 HELIX 21 AC3 ALA B 141 THR B 153 1 13 HELIX 22 AC4 LEU B 154 GLY B 158 5 5 HELIX 23 AC5 GLN B 174 SER B 183 1 10 HELIX 24 AC6 ASP B 191 HIS B 197 1 7 HELIX 25 AC7 TRP B 221 GLN B 226 1 6 HELIX 26 AC8 CYS B 237 GLY B 255 1 19 HELIX 27 AC9 PRO B 266 ASP B 270 5 5 HELIX 28 AD1 PRO B 296 CYS B 300 5 5 HELIX 29 AD2 ASP B 307 ALA B 318 1 12 HELIX 30 AD3 PRO B 343 GLY B 357 1 15 HELIX 31 AD4 SER B 373 ALA B 383 1 11 HELIX 32 AD5 ALA B 405 ILE B 409 5 5 HELIX 33 AD6 GLY B 435 GLU B 440 1 6 HELIX 34 AD7 GLY B 454 SER B 470 1 17 HELIX 35 AD8 SER B 479 VAL B 483 5 5 SHEET 1 AA116 GLN A 186 VAL A 190 0 SHEET 2 AA116 ASN A 160 SER A 166 1 N VAL A 161 O GLN A 186 SHEET 3 AA116 SER A 119 SER A 124 1 N ILE A 122 O ALA A 164 SHEET 4 AA116 PHE A 204 VAL A 207 -1 O VAL A 206 N ASP A 121 SHEET 5 AA116 HIS A 211 GLY A 215 -1 O HIS A 211 N VAL A 207 SHEET 6 AA116 GLU A 229 TYR A 235 -1 O VAL A 232 N LEU A 214 SHEET 7 AA116 PRO A 80 SER A 88 -1 N GLU A 82 O TYR A 235 SHEET 8 AA116 MET A 279 LEU A 283 1 N CYS A 282 O CYS A 81 SHEET 9 AA116 THR A 286 ALA A 295 -1 O THR A 286 N LEU A 283 SHEET 10 AA116 GLY A 443 THR A 449 -1 O THR A 449 N LEU A 289 SHEET 11 AA116 ALA A 425 GLY A 429 -1 N THR A 426 O VAL A 448 SHEET 12 AA116 LYS A 418 THR A 422 -1 N MET A 420 O TYR A 427 SHEET 13 AA116 PHE A 321 VAL A 326 -1 N TYR A 323 O VAL A 421 SHEET 14 AA116 LYS A 359 SER A 365 1 O LEU A 363 N VAL A 324 SHEET 15 AA116 ASP A 392 PHE A 398 1 O ASP A 392 N VAL A 360 SHEET 16 AA116 SER A 473 HIS A 474 -1 O HIS A 474 N LEU A 397 SHEET 1 AA2 2 TRP A 127 THR A 128 0 SHEET 2 AA2 2 MET A 219 ASP A 220 1 O MET A 219 N THR A 128 SHEET 1 AA3 2 TYR A 329 LEU A 330 0 SHEET 2 AA3 2 TRP A 433 SER A 434 1 O TRP A 433 N LEU A 330 SHEET 1 AA410 GLN B 186 VAL B 190 0 SHEET 2 AA410 ASN B 160 SER B 166 1 N VAL B 165 O VAL B 190 SHEET 3 AA410 SER B 119 SER B 124 1 N ILE B 122 O ALA B 164 SHEET 4 AA410 PHE B 204 VAL B 207 -1 O VAL B 206 N ASP B 121 SHEET 5 AA410 HIS B 211 GLY B 215 -1 O TYR B 213 N TRP B 205 SHEET 6 AA410 GLU B 229 TYR B 235 -1 O VAL B 232 N LEU B 214 SHEET 7 AA410 PRO B 80 SER B 88 -1 N GLU B 82 O TYR B 235 SHEET 8 AA410 MET B 279 LEU B 283 1 N CYS B 282 O CYS B 81 SHEET 9 AA410 THR B 286 ALA B 295 -1 O ALA B 290 N MET B 279 SHEET 10 AA410 THR B 305 PRO B 306 1 O THR B 305 N SER B 294 SHEET 1 AA516 GLN B 186 VAL B 190 0 SHEET 2 AA516 ASN B 160 SER B 166 1 N VAL B 165 O VAL B 190 SHEET 3 AA516 SER B 119 SER B 124 1 N ILE B 122 O ALA B 164 SHEET 4 AA516 PHE B 204 VAL B 207 -1 O VAL B 206 N ASP B 121 SHEET 5 AA516 HIS B 211 GLY B 215 -1 O TYR B 213 N TRP B 205 SHEET 6 AA516 GLU B 229 TYR B 235 -1 O VAL B 232 N LEU B 214 SHEET 7 AA516 PRO B 80 SER B 88 -1 N GLU B 82 O TYR B 235 SHEET 8 AA516 MET B 279 LEU B 283 1 N CYS B 282 O CYS B 81 SHEET 9 AA516 THR B 286 ALA B 295 -1 O ALA B 290 N MET B 279 SHEET 10 AA516 GLY B 443 THR B 449 -1 O THR B 449 N LEU B 289 SHEET 11 AA516 THR B 426 GLY B 429 -1 N ILE B 428 O LEU B 446 SHEET 12 AA516 LYS B 418 THR B 422 -1 N LYS B 418 O GLY B 429 SHEET 13 AA516 PHE B 321 VAL B 326 -1 N TYR B 323 O VAL B 421 SHEET 14 AA516 LYS B 359 SER B 365 1 O LEU B 363 N VAL B 324 SHEET 15 AA516 ASP B 392 PHE B 398 1 O GLN B 394 N LEU B 362 SHEET 16 AA516 SER B 473 ASP B 475 -1 O HIS B 474 N LEU B 397 SHEET 1 AA6 2 TRP B 127 THR B 128 0 SHEET 2 AA6 2 MET B 219 ASP B 220 1 O MET B 219 N THR B 128 SHEET 1 AA7 2 THR B 332 LEU B 333 0 SHEET 2 AA7 2 ARG B 340 PHE B 341 -1 O ARG B 340 N LEU B 333 SSBOND 1 CYS A 81 CYS A 237 1555 1555 2.06 SSBOND 2 CYS A 366 CYS A 487 1555 1555 2.08 SSBOND 3 CYS B 81 CYS B 237 1555 1555 2.07 SSBOND 4 CYS B 366 CYS B 487 1555 1555 2.06 LINK ND2 ASN A 236 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 284 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 236 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 284 C1 NAG F 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.43 CISPEP 1 ALA A 295 PRO A 296 0 -7.81 CISPEP 2 ALA B 295 PRO B 296 0 -3.75 CISPEP 3 HIS B 337 PRO B 338 0 3.21 CRYST1 205.137 60.566 111.501 90.00 98.72 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004875 0.000000 0.000748 0.00000 SCALE2 0.000000 0.016511 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009073 0.00000