HEADER ANTITOXIN 10-DEC-23 8VA0 TITLE X-RAY CRYSTAL STRUCTURE OF JGFN4 N76D COMPLEXED WITH FENTANYL IN DIMER TITLE 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: JGFN4; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELIDAE; SOURCE 3 ORGANISM_TAXID: 9835; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTITOXIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,N.MOLLER,H.AIHARA REVDAT 1 07-AUG-24 8VA0 0 JRNL AUTH J.P.GALLANT,D.HICKS,K.SHI,N.H.MOELLER,B.HOPPE,E.W.LAKE, JRNL AUTH 2 C.BAEHR,M.PRAVETONI,H.AIHARA,A.M.LEBEAU JRNL TITL IDENTIFICATION AND BIOPHYSICAL CHARACTERIZATION OF A NOVEL JRNL TITL 2 DOMAIN-SWAPPED CAMELID ANTIBODY SPECIFIC FOR FENTANYL. JRNL REF J.BIOL.CHEM. V. 300 07502 2024 JRNL REFN ESSN 1083-351X JRNL PMID 38945452 JRNL DOI 10.1016/J.JBC.2024.107502 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3000 - 3.5400 0.99 2836 170 0.1649 0.2020 REMARK 3 2 3.5400 - 2.8100 0.99 2723 139 0.2012 0.2293 REMARK 3 3 2.8100 - 2.4500 0.99 2727 161 0.2305 0.2680 REMARK 3 4 2.4500 - 2.2300 0.99 2702 134 0.2267 0.3017 REMARK 3 5 2.2300 - 2.0700 0.99 2717 126 0.2332 0.2575 REMARK 3 6 2.0700 - 1.9500 0.99 2657 163 0.2645 0.3276 REMARK 3 7 1.9500 - 1.8500 0.99 2687 144 0.3476 0.3974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.261 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.526 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1789 REMARK 3 ANGLE : 0.831 2397 REMARK 3 CHIRALITY : 0.052 266 REMARK 3 PLANARITY : 0.005 308 REMARK 3 DIHEDRAL : 14.053 648 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2291 32.3518 -13.3584 REMARK 3 T TENSOR REMARK 3 T11: 0.5335 T22: 0.3722 REMARK 3 T33: 0.3394 T12: -0.0049 REMARK 3 T13: 0.0217 T23: 0.0769 REMARK 3 L TENSOR REMARK 3 L11: 9.4465 L22: 2.1929 REMARK 3 L33: 2.2734 L12: 1.0417 REMARK 3 L13: 1.3798 L23: 1.7182 REMARK 3 S TENSOR REMARK 3 S11: -0.1582 S12: -0.0707 S13: 0.5414 REMARK 3 S21: -0.8701 S22: 0.0987 S23: 0.5475 REMARK 3 S31: -1.7963 S32: 0.1802 S33: -0.0261 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9096 12.7499 -26.4082 REMARK 3 T TENSOR REMARK 3 T11: 0.4611 T22: 0.3416 REMARK 3 T33: 0.2824 T12: 0.0753 REMARK 3 T13: -0.0140 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 8.6775 L22: 6.0160 REMARK 3 L33: 9.5370 L12: -3.6774 REMARK 3 L13: 3.1341 L23: -6.5666 REMARK 3 S TENSOR REMARK 3 S11: 0.5160 S12: 0.1912 S13: -0.7161 REMARK 3 S21: -0.1620 S22: -0.4595 S23: -0.0417 REMARK 3 S31: 1.5360 S32: 0.7256 S33: -0.1175 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1911 25.6150 -16.8671 REMARK 3 T TENSOR REMARK 3 T11: 0.4067 T22: 0.4490 REMARK 3 T33: 0.2517 T12: -0.0080 REMARK 3 T13: -0.0026 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 7.6304 L22: 5.8661 REMARK 3 L33: 4.3652 L12: 5.3580 REMARK 3 L13: 5.2401 L23: 4.9241 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: 0.2546 S13: -0.0800 REMARK 3 S21: 0.7812 S22: 0.0523 S23: -0.4095 REMARK 3 S31: 0.0069 S32: 0.4147 S33: -0.0605 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6989 25.8663 -6.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.2793 T22: 0.3742 REMARK 3 T33: 0.2118 T12: -0.0032 REMARK 3 T13: 0.0140 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 4.4725 L22: 7.0836 REMARK 3 L33: 5.2809 L12: 0.2005 REMARK 3 L13: 0.1162 L23: -1.6105 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: -0.3841 S13: 0.0404 REMARK 3 S21: 0.1222 S22: 0.1579 S23: 0.0693 REMARK 3 S31: -0.5489 S32: -0.0120 S33: -0.1153 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5830 17.0828 -11.4244 REMARK 3 T TENSOR REMARK 3 T11: 0.3339 T22: 0.7052 REMARK 3 T33: 0.3678 T12: 0.0100 REMARK 3 T13: 0.0312 T23: -0.0811 REMARK 3 L TENSOR REMARK 3 L11: 3.7142 L22: 5.4387 REMARK 3 L33: 9.6443 L12: 4.0689 REMARK 3 L13: 5.6645 L23: 6.1594 REMARK 3 S TENSOR REMARK 3 S11: 0.6414 S12: -1.7889 S13: 0.9581 REMARK 3 S21: 0.2861 S22: -0.7076 S23: 0.4816 REMARK 3 S31: 0.6300 S32: -1.7533 S33: 0.0308 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1829 17.6145 -6.6303 REMARK 3 T TENSOR REMARK 3 T11: 0.3242 T22: 0.3816 REMARK 3 T33: 0.2046 T12: 0.0327 REMARK 3 T13: -0.0311 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 5.5645 L22: 7.4341 REMARK 3 L33: 6.2594 L12: -4.7731 REMARK 3 L13: -0.2144 L23: -2.7378 REMARK 3 S TENSOR REMARK 3 S11: 0.8859 S12: 0.2130 S13: -1.0939 REMARK 3 S21: 0.1734 S22: -0.1920 S23: -0.2919 REMARK 3 S31: 0.7560 S32: -0.0047 S33: -0.6854 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2234 14.8055 -8.5880 REMARK 3 T TENSOR REMARK 3 T11: 0.3197 T22: 0.4297 REMARK 3 T33: 0.3023 T12: 0.1184 REMARK 3 T13: -0.0354 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 8.6889 L22: 5.9635 REMARK 3 L33: 8.3428 L12: 4.3245 REMARK 3 L13: 1.9261 L23: 1.9692 REMARK 3 S TENSOR REMARK 3 S11: 0.3949 S12: -0.4808 S13: -0.3727 REMARK 3 S21: 0.0380 S22: -0.1690 S23: -0.2637 REMARK 3 S31: 1.0607 S32: 0.6227 S33: -0.2821 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4781 23.7439 -14.7198 REMARK 3 T TENSOR REMARK 3 T11: 0.3284 T22: 0.6022 REMARK 3 T33: 0.3455 T12: 0.0388 REMARK 3 T13: 0.0342 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.9101 L22: 9.8144 REMARK 3 L33: 6.9116 L12: 3.3228 REMARK 3 L13: 2.8652 L23: 2.9977 REMARK 3 S TENSOR REMARK 3 S11: 0.0764 S12: 0.0728 S13: 0.0405 REMARK 3 S21: -0.3445 S22: -0.1740 S23: -0.8319 REMARK 3 S31: -0.3331 S32: 1.2029 S33: 0.0211 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0002 9.6073 -19.7427 REMARK 3 T TENSOR REMARK 3 T11: 0.7319 T22: 0.4563 REMARK 3 T33: 0.4364 T12: -0.0018 REMARK 3 T13: -0.0563 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 4.0959 L22: 5.3531 REMARK 3 L33: 8.9197 L12: -4.3481 REMARK 3 L13: 2.1040 L23: -0.3244 REMARK 3 S TENSOR REMARK 3 S11: 0.1692 S12: -1.1048 S13: -1.0763 REMARK 3 S21: -0.5361 S22: 0.2600 S23: 0.8804 REMARK 3 S31: 2.2572 S32: -0.1489 S33: -0.3502 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0906 18.1894 5.0327 REMARK 3 T TENSOR REMARK 3 T11: 0.2110 T22: 0.4254 REMARK 3 T33: 0.3049 T12: 0.0070 REMARK 3 T13: 0.0212 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.3014 L22: 0.8131 REMARK 3 L33: 4.3015 L12: -0.5908 REMARK 3 L13: 1.2939 L23: -0.9803 REMARK 3 S TENSOR REMARK 3 S11: -0.0789 S12: -0.0913 S13: -0.1313 REMARK 3 S21: 0.0182 S22: 0.0574 S23: 0.0109 REMARK 3 S31: -0.1152 S32: -0.2871 S33: 0.0703 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4243 24.6645 16.5936 REMARK 3 T TENSOR REMARK 3 T11: 0.4035 T22: 0.4379 REMARK 3 T33: 0.3018 T12: 0.0443 REMARK 3 T13: 0.0027 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 2.8699 L22: 3.5575 REMARK 3 L33: 3.2403 L12: -2.4964 REMARK 3 L13: 1.6337 L23: -3.2117 REMARK 3 S TENSOR REMARK 3 S11: -0.5857 S12: 0.1403 S13: 0.4293 REMARK 3 S21: 0.2124 S22: 0.5189 S23: -0.7091 REMARK 3 S31: -0.6860 S32: -0.7106 S33: 0.0794 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4660 9.4561 18.1846 REMARK 3 T TENSOR REMARK 3 T11: 0.3689 T22: 0.4395 REMARK 3 T33: 0.4144 T12: -0.1080 REMARK 3 T13: 0.0825 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 5.9411 L22: 9.6497 REMARK 3 L33: 3.5599 L12: -2.8945 REMARK 3 L13: -0.3145 L23: 2.9733 REMARK 3 S TENSOR REMARK 3 S11: 0.1917 S12: -0.2485 S13: -1.1581 REMARK 3 S21: 0.8460 S22: -0.7406 S23: 0.7074 REMARK 3 S31: 0.5857 S32: -0.6161 S33: 0.5121 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2302 20.8173 8.1323 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: 0.4564 REMARK 3 T33: 0.2612 T12: 0.0282 REMARK 3 T13: 0.0264 T23: -0.0280 REMARK 3 L TENSOR REMARK 3 L11: 8.8186 L22: 8.2817 REMARK 3 L33: 6.4727 L12: -4.7342 REMARK 3 L13: 3.0720 L23: -1.3601 REMARK 3 S TENSOR REMARK 3 S11: -0.2069 S12: -0.2209 S13: 0.2781 REMARK 3 S21: 0.1819 S22: 0.2082 S23: 0.1828 REMARK 3 S31: -0.5788 S32: -0.7792 S33: 0.0219 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3699 13.9081 5.7789 REMARK 3 T TENSOR REMARK 3 T11: 0.3168 T22: 0.4862 REMARK 3 T33: 0.3781 T12: -0.0373 REMARK 3 T13: 0.0555 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 4.4308 L22: 3.4744 REMARK 3 L33: 7.4546 L12: -3.6237 REMARK 3 L13: 5.3045 L23: -3.5335 REMARK 3 S TENSOR REMARK 3 S11: 0.6551 S12: 1.1859 S13: 0.4002 REMARK 3 S21: -0.2632 S22: -0.7419 S23: -0.4404 REMARK 3 S31: 0.2795 S32: 0.6640 S33: 0.0459 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0032 9.2934 2.1253 REMARK 3 T TENSOR REMARK 3 T11: 0.3684 T22: 0.4851 REMARK 3 T33: 0.5827 T12: -0.0726 REMARK 3 T13: 0.0012 T23: -0.1832 REMARK 3 L TENSOR REMARK 3 L11: 6.4117 L22: 8.2533 REMARK 3 L33: 7.6284 L12: -6.8108 REMARK 3 L13: 3.9538 L23: -5.4009 REMARK 3 S TENSOR REMARK 3 S11: 0.7387 S12: 0.6242 S13: -0.7720 REMARK 3 S21: -1.0244 S22: -0.2705 S23: 0.1433 REMARK 3 S31: 0.9090 S32: 0.1146 S33: -0.4665 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1449 13.8956 12.3057 REMARK 3 T TENSOR REMARK 3 T11: 0.2903 T22: 0.5352 REMARK 3 T33: 0.3219 T12: -0.0341 REMARK 3 T13: 0.0489 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 6.9265 L22: 9.8306 REMARK 3 L33: 6.3437 L12: -3.8064 REMARK 3 L13: -0.5161 L23: 3.2586 REMARK 3 S TENSOR REMARK 3 S11: 0.1148 S12: 0.3202 S13: -0.4272 REMARK 3 S21: 0.4829 S22: -0.3854 S23: 0.5949 REMARK 3 S31: 0.1772 S32: -1.1664 S33: 0.2466 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8411 10.0274 11.6417 REMARK 3 T TENSOR REMARK 3 T11: 0.2061 T22: 0.4057 REMARK 3 T33: 0.3999 T12: -0.0392 REMARK 3 T13: 0.0255 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 3.5863 L22: 5.3496 REMARK 3 L33: 4.8782 L12: -2.9396 REMARK 3 L13: 0.4487 L23: -2.7083 REMARK 3 S TENSOR REMARK 3 S11: 0.2244 S12: 0.2069 S13: -0.6539 REMARK 3 S21: 0.3839 S22: -0.5350 S23: 0.5391 REMARK 3 S31: 0.0983 S32: 0.0251 S33: 0.2867 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5128 21.9139 -15.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.2557 T22: 0.4583 REMARK 3 T33: 0.2858 T12: 0.0109 REMARK 3 T13: -0.0139 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 3.0319 L22: 1.0425 REMARK 3 L33: 4.3841 L12: -0.3730 REMARK 3 L13: 1.8120 L23: -2.0683 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: -0.1857 S13: -0.0287 REMARK 3 S21: -0.1733 S22: 0.1142 S23: -0.0710 REMARK 3 S31: 0.0010 S32: -0.4495 S33: 0.0578 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 2 through 53 or REMARK 3 resid 55 through 77 or resid 80 through REMARK 3 94 or resid 96 through 113)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 2 through 53 or REMARK 3 resid 55 through 77 or resid 80 through REMARK 3 94 or resid 96 through 113)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20160 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 96.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.90300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: J348, C03_00 8.0 0.2 M, SODIUM ACETATE REMARK 280 TRIHY 20 % W/V, POLYETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.30250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.30250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.65450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.92250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.65450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.92250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.30250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.65450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.92250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.30250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.65450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.92250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 MET B 0 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 331 O HOH B 337 2.11 REMARK 500 O GLN B 1 O HOH B 301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 44 O2 EDO B 201 8455 2.09 REMARK 500 O HOH B 304 O HOH B 346 8555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 95 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 7V7 A 201 DBREF 8VA0 A 0 119 PDB 8VA0 8VA0 0 119 DBREF 8VA0 B 0 119 PDB 8VA0 8VA0 0 119 SEQRES 1 A 120 MET GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ALA SEQRES 2 A 120 GLN ALA GLY GLY SER LEU GLN LEU SER CYS ALA ALA SER SEQRES 3 A 120 GLY SER THR SER ARG VAL ASN ALA MET GLY TRP TYR ARG SEQRES 4 A 120 GLN THR PRO GLY LYS GLU ARG GLU LEU VAL ALA ALA ILE SEQRES 5 A 120 ASP ARG SER GLY ALA THR VAL TYR SER GLU SER VAL ARG SEQRES 6 A 120 GLY ARG PHE THR ILE SER LYS ASN ASP ALA LYS ASP ILE SEQRES 7 A 120 VAL TRP LEU GLN MET ASN ASN LEU THR THR GLU ASP THR SEQRES 8 A 120 ALA VAL TYR TYR CYS ARG SER GLY VAL LEU GLY SER TRP SEQRES 9 A 120 GLY LEU GLY THR GLN VAL THR VAL SER SER HIS HIS HIS SEQRES 10 A 120 HIS HIS HIS SEQRES 1 B 120 MET GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU ALA SEQRES 2 B 120 GLN ALA GLY GLY SER LEU GLN LEU SER CYS ALA ALA SER SEQRES 3 B 120 GLY SER THR SER ARG VAL ASN ALA MET GLY TRP TYR ARG SEQRES 4 B 120 GLN THR PRO GLY LYS GLU ARG GLU LEU VAL ALA ALA ILE SEQRES 5 B 120 ASP ARG SER GLY ALA THR VAL TYR SER GLU SER VAL ARG SEQRES 6 B 120 GLY ARG PHE THR ILE SER LYS ASN ASP ALA LYS ASP ILE SEQRES 7 B 120 VAL TRP LEU GLN MET ASN ASN LEU THR THR GLU ASP THR SEQRES 8 B 120 ALA VAL TYR TYR CYS ARG SER GLY VAL LEU GLY SER TRP SEQRES 9 B 120 GLY LEU GLY THR GLN VAL THR VAL SER SER HIS HIS HIS SEQRES 10 B 120 HIS HIS HIS HET 7V7 A 201 25 HET PGE A 202 10 HET EDO B 201 4 HET 7V7 B 202 25 HET EDO B 203 4 HETNAM 7V7 N-PHENYL-N-[1-(2-PHENYLETHYL)PIPERIDIN-4-YL]PROPANAMIDE HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 7V7 2(C22 H28 N2 O) FORMUL 4 PGE C6 H14 O4 FORMUL 5 EDO 2(C2 H6 O2) FORMUL 8 HOH *104(H2 O) HELIX 1 AA1 THR A 86 THR A 90 5 5 HELIX 2 AA2 ASP B 73 LYS B 75 5 3 HELIX 3 AA3 THR B 86 THR B 90 5 5 SHEET 1 AA1 4 VAL A 2 SER A 7 0 SHEET 2 AA1 4 LEU A 18 GLY A 26 -1 O SER A 25 N GLN A 3 SHEET 3 AA1 4 ILE A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ASN A 72 -1 N ASN A 72 O ILE A 77 SHEET 1 AA2 6 LEU A 11 GLN A 13 0 SHEET 2 AA2 6 THR B 107 SER B 112 1 O SER B 112 N ALA A 12 SHEET 3 AA2 6 ALA A 91 TRP A 103 -1 N TYR A 93 O THR B 107 SHEET 4 AA2 6 ALA B 91 TRP B 103 -1 O GLY B 101 N SER A 97 SHEET 5 AA2 6 THR A 107 SER A 112 -1 N THR A 107 O TYR B 93 SHEET 6 AA2 6 GLY B 10 GLN B 13 1 O ALA B 12 N THR A 110 SHEET 1 AA3 8 THR A 57 TYR A 59 0 SHEET 2 AA3 8 GLU A 46 ASP A 52 -1 N ALA A 50 O VAL A 58 SHEET 3 AA3 8 ALA A 33 GLN A 39 -1 N TRP A 36 O ALA A 49 SHEET 4 AA3 8 ALA A 91 TRP A 103 -1 O TYR A 94 N TYR A 37 SHEET 5 AA3 8 ALA B 91 TRP B 103 -1 O GLY B 101 N SER A 97 SHEET 6 AA3 8 ALA B 33 GLN B 39 -1 N TYR B 37 O TYR B 94 SHEET 7 AA3 8 GLU B 46 ASP B 52 -1 O ALA B 49 N TRP B 36 SHEET 8 AA3 8 THR B 57 TYR B 59 -1 O VAL B 58 N ALA B 50 SHEET 1 AA4 4 VAL B 2 SER B 7 0 SHEET 2 AA4 4 LEU B 18 GLY B 26 -1 O SER B 25 N GLN B 3 SHEET 3 AA4 4 ILE B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AA4 4 PHE B 67 ASN B 72 -1 N THR B 68 O GLN B 81 SSBOND 1 CYS A 22 CYS A 95 1555 1555 2.04 SSBOND 2 CYS B 22 CYS B 95 1555 1555 2.03 CRYST1 57.309 83.845 96.605 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010351 0.00000