HEADER BIOSYNTHETIC PROTEIN 11-DEC-23 8VAD TITLE CRYSTAL STRUCTURE OF MCOHNE-I, A POTENT IN-VIVO NEUTROPHIL ELASTASE TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPSIN INHIBITOR 2; COMPND 3 CHAIN: B, A, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: MOMORDICA COCHINCHINENSIS; SOURCE 4 ORGANISM_COMMON: SPINY BITTER CUCUMBER; SOURCE 5 ORGANISM_TAXID: 3674 KEYWDS BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.XU,G.RAJASEKARAN,S.LI,L.CHEN,J.A.CAMARERO REVDAT 1 25-DEC-24 8VAD 0 JRNL AUTH G.RAJASEKARAN,J.XU,S.LI,L.CHEN,J.A.CAMARERO JRNL TITL CRYSTAL STRUCTURE OF MCOHNE-I, A POTENT IN-VIVO NEUTROPHIL JRNL TITL 2 ELASTASE INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.230 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0500 - 3.1200 0.99 1395 136 0.1954 0.2550 REMARK 3 2 3.1200 - 2.4800 1.00 1418 137 0.1986 0.2090 REMARK 3 3 2.4800 - 2.1700 1.00 1401 136 0.1863 0.2018 REMARK 3 4 2.1700 - 1.9700 1.00 1370 134 0.1869 0.2018 REMARK 3 5 1.9700 - 1.8300 1.00 1415 146 0.1984 0.2168 REMARK 3 6 1.8300 - 1.7200 1.00 1437 136 0.1818 0.1950 REMARK 3 7 1.7200 - 1.6300 1.00 1284 124 0.2108 0.2309 REMARK 3 8 1.6300 - 1.5600 1.00 1491 143 0.1892 0.1971 REMARK 3 9 1.5600 - 1.5000 1.00 1360 135 0.1876 0.2199 REMARK 3 10 1.5000 - 1.4500 1.00 1446 139 0.1936 0.1962 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.117 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 4.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 985 REMARK 3 ANGLE : 1.103 1331 REMARK 3 CHIRALITY : 0.080 133 REMARK 3 PLANARITY : 0.008 183 REMARK 3 DIHEDRAL : 8.984 365 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -10.8986 -0.5398 8.0301 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.0372 REMARK 3 T33: 0.0396 T12: -0.0006 REMARK 3 T13: 0.0018 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: -0.0030 L22: 0.0162 REMARK 3 L33: 0.0210 L12: 0.0031 REMARK 3 L13: 0.0048 L23: 0.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.0012 S13: -0.0021 REMARK 3 S21: 0.0011 S22: 0.0028 S23: 0.0025 REMARK 3 S31: -0.0045 S32: 0.0117 S33: -0.0060 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and ((resid 1 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name OG )) or (resid 2 and (name N or REMARK 3 name CA or name C or name O )) or (resid REMARK 3 3 and (name N or name CA or name C or REMARK 3 name O or name CB or name CG or name CD )) REMARK 3 or (resid 4 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name OD1 or name ND2)) or (resid 5 REMARK 3 through 6 and (name N or name CA or name REMARK 3 C or name O )) or (resid 7 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG1 or name CG2)) or (resid 8 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 9 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD )) or REMARK 3 (resid 10 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2)) or (resid 11 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD or name CE )) or REMARK 3 (resid 12 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2 or name CD1)) or (resid 13 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2 or name CE1 or name CE2 or name CZ or REMARK 3 name OH )) or (resid 14 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD1 or name CD2)) or REMARK 3 (resid 15 and (name N or name CA or name REMARK 3 C or name O or name CB or name SG )) or REMARK 3 (resid 16 through 17 and (name N or name REMARK 3 CA or name C or name O or name CB or name REMARK 3 CG or name CD or name NE or name CZ or REMARK 3 name NH1 or name NH2)) or (resid 18 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name OD1 or name REMARK 3 OD2)) or (resid 19 and (name N or name CA REMARK 3 or name C or name O or name CB or name OG REMARK 3 )) or (resid 20 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name OD1 or name OD2)) or (resid 21 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 23 and REMARK 3 (name N or name CA or name C or name O )) REMARK 3 or (resid 24 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name CD or name OE1 or name OE2)) or REMARK 3 (resid 25 and (name N or name CA or name REMARK 3 C or name O or name CB or name SG )) or REMARK 3 (resid 26 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2 or name CD1)) or (resid 27 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 28 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2)) or (resid 29 and (name N or name CA REMARK 3 or name C or name O )) or (resid 30 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name OD1 or name REMARK 3 ND2)) or (resid 31 and (name N or name CA REMARK 3 or name C or name O )) or (resid 32 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2 or name CE1 or name CE2 or name CZ or REMARK 3 name OH )) or (resid 33 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name SG )) or (resid 34 and (name N or REMARK 3 name CA or name C or name O )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and ((resid 1 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name OG )) or (resid 2 and (name N or REMARK 3 name CA or name C or name O )) or (resid REMARK 3 3 and (name N or name CA or name C or REMARK 3 name O or name CB or name CG or name CD )) REMARK 3 or (resid 4 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name OD1 or name ND2)) or (resid 5 REMARK 3 through 6 and (name N or name CA or name REMARK 3 C or name O )) or (resid 7 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG1 or name CG2)) or (resid 8 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 9 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD )) or REMARK 3 (resid 10 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2)) or (resid 11 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD or name CE )) or REMARK 3 (resid 12 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2 or name CD1)) or (resid 13 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2 or name CE1 or name CE2 or name CZ or REMARK 3 name OH )) or (resid 14 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD1 or name CD2)) or REMARK 3 (resid 15 and (name N or name CA or name REMARK 3 C or name O or name CB or name SG )) or REMARK 3 (resid 16 through 17 and (name N or name REMARK 3 CA or name C or name O or name CB or name REMARK 3 CG or name CD or name NE or name CZ or REMARK 3 name NH1 or name NH2)) or (resid 18 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name OD1 or name REMARK 3 OD2)) or (resid 19 and (name N or name CA REMARK 3 or name C or name O or name CB or name OG REMARK 3 )) or (resid 20 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name OD1 or name OD2)) or (resid 21 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 23 and REMARK 3 (name N or name CA or name C or name O )) REMARK 3 or (resid 24 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name CD or name OE1 or name OE2)) or REMARK 3 (resid 25 and (name N or name CA or name REMARK 3 C or name O or name CB or name SG )) or REMARK 3 (resid 26 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2 or name CD1)) or (resid 27 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 28 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2)) or (resid 29 and (name N or name CA REMARK 3 or name C or name O )) or (resid 30 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name OD1 or name REMARK 3 ND2)) or (resid 31 and (name N or name CA REMARK 3 or name C or name O )) or (resid 32 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2 or name CE1 or name CE2 or name CZ or REMARK 3 name OH )) or (resid 33 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name SG )) or (resid 34 and (name N or REMARK 3 name CA or name C or name O )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and ((resid 1 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name OG )) or (resid 2 and (name N or REMARK 3 name CA or name C or name O )) or (resid REMARK 3 3 and (name N or name CA or name C or REMARK 3 name O or name CB or name CG or name CD )) REMARK 3 or (resid 4 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name OD1 or name ND2)) or (resid 5 REMARK 3 through 6 and (name N or name CA or name REMARK 3 C or name O )) or (resid 7 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG1 or name CG2)) or (resid 8 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 9 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD )) or REMARK 3 (resid 10 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2)) or (resid 11 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD or name CE )) or REMARK 3 (resid 12 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2 or name CD1)) or (resid 13 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2 or name CE1 or name CE2 or name CZ or REMARK 3 name OH )) or (resid 14 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD1 or name CD2)) or REMARK 3 (resid 15 and (name N or name CA or name REMARK 3 C or name O or name CB or name SG )) or REMARK 3 (resid 16 through 17 and (name N or name REMARK 3 CA or name C or name O or name CB or name REMARK 3 CG or name CD or name NE or name CZ or REMARK 3 name NH1 or name NH2)) or (resid 18 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name OD1 or name REMARK 3 OD2)) or (resid 19 and (name N or name CA REMARK 3 or name C or name O or name CB or name OG REMARK 3 )) or (resid 20 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name OD1 or name OD2)) or (resid 21 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 23 and REMARK 3 (name N or name CA or name C or name O )) REMARK 3 or (resid 24 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name CD or name OE1 or name OE2)) or REMARK 3 (resid 25 and (name N or name CA or name REMARK 3 C or name O or name CB or name SG )) or REMARK 3 (resid 26 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2 or name CD1)) or (resid 27 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 28 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2)) or (resid 29 and (name N or name CA REMARK 3 or name C or name O )) or (resid 30 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name OD1 or name REMARK 3 ND2)) or (resid 31 and (name N or name CA REMARK 3 or name C or name O )) or (resid 32 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2 or name CE1 or name CE2 or name CZ or REMARK 3 name OH )) or (resid 33 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name SG )) or (resid 34 and (name N or REMARK 3 name CA or name C or name O )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and ((resid 1 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name OG )) or (resid 2 and (name N or REMARK 3 name CA or name C or name O )) or (resid REMARK 3 3 and (name N or name CA or name C or REMARK 3 name O or name CB or name CG or name CD )) REMARK 3 or (resid 4 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name OD1 or name ND2)) or (resid 5 REMARK 3 through 6 and (name N or name CA or name REMARK 3 C or name O )) or (resid 7 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG1 or name CG2)) or (resid 8 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 9 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD )) or REMARK 3 (resid 10 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2)) or (resid 11 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD or name CE )) or REMARK 3 (resid 12 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2 or name CD1)) or (resid 13 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2 or name CE1 or name CE2 or name CZ or REMARK 3 name OH )) or (resid 14 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG or name CD1 or name CD2)) or REMARK 3 (resid 15 and (name N or name CA or name REMARK 3 C or name O or name CB or name SG )) or REMARK 3 (resid 16 through 17 and (name N or name REMARK 3 CA or name C or name O or name CB or name REMARK 3 CG or name CD or name NE or name CZ or REMARK 3 name NH1 or name NH2)) or (resid 18 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name OD1 or name REMARK 3 OD2)) or (resid 19 and (name N or name CA REMARK 3 or name C or name O or name CB or name OG REMARK 3 )) or (resid 20 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name OD1 or name OD2)) or (resid 21 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 23 and REMARK 3 (name N or name CA or name C or name O )) REMARK 3 or (resid 24 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name CD or name OE1 or name OE2)) or REMARK 3 (resid 25 and (name N or name CA or name REMARK 3 C or name O or name CB or name SG )) or REMARK 3 (resid 26 and (name N or name CA or name REMARK 3 C or name O or name CB or name CG1 or REMARK 3 name CG2 or name CD1)) or (resid 27 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name SG )) or (resid 28 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2)) or (resid 29 and (name N or name CA REMARK 3 or name C or name O )) or (resid 30 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name OD1 or name REMARK 3 ND2)) or (resid 31 and (name N or name CA REMARK 3 or name C or name O )) or (resid 32 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB or name CG or name CD1 or name REMARK 3 CD2 or name CE1 or name CE2 or name CZ or REMARK 3 name OH )) or (resid 33 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name SG )) or (resid 34 and (name N or REMARK 3 name CA or name C or name O )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97648 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15389 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 35.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.10460 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.13960 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 13.26 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 23.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 30% W/V REMARK 280 POLYETHYLENE GLYCOL 8,000, VAPOR DIFFUSION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER D 19 O HOH D 104 1.36 REMARK 500 HD21 ASN C 4 O HOH C 202 1.48 REMARK 500 H GLY B 2 O HOH B 205 1.52 REMARK 500 H CYS A 15 O HOH A 101 1.57 REMARK 500 H GLY C 2 O HOH C 203 1.59 REMARK 500 O HOH A 126 O HOH A 136 1.85 REMARK 500 O HOH A 134 O HOH C 239 1.91 REMARK 500 O HOH C 238 O HOH C 241 1.96 REMARK 500 SG CYS A 15 O HOH A 101 1.98 REMARK 500 O HOH A 128 O HOH A 137 1.99 REMARK 500 SG CYS D 15 O HOH D 102 2.00 REMARK 500 O HOH B 239 O HOH B 241 2.02 REMARK 500 OD1 ASN D 4 O HOH D 101 2.03 REMARK 500 O GLY A 31 O HOH A 101 2.03 REMARK 500 O HOH C 227 O HOH C 233 2.04 REMARK 500 O CYS D 15 O HOH D 102 2.05 REMARK 500 O PRO C 9 O HOH C 201 2.05 REMARK 500 N CYS A 15 O HOH A 101 2.06 REMARK 500 O HOH B 213 O HOH B 241 2.08 REMARK 500 OE1 GLU D 24 O HOH D 103 2.08 REMARK 500 O1 SO4 B 101 O HOH B 201 2.10 REMARK 500 O TYR B 32 O HOH B 202 2.12 REMARK 500 O HOH D 136 O HOH D 137 2.13 REMARK 500 O HOH C 205 O HOH D 117 2.14 REMARK 500 O HOH C 201 O HOH C 214 2.14 REMARK 500 O HOH C 202 O HOH D 103 2.14 REMARK 500 OD1 ASN A 4 O HOH A 102 2.14 REMARK 500 N CYS D 15 O HOH D 102 2.14 REMARK 500 O HOH D 129 O HOH D 139 2.16 REMARK 500 O HOH C 221 O HOH C 233 2.17 REMARK 500 ND2 ASN A 4 O HOH A 103 2.17 REMARK 500 N LEU B 28 O HOH B 202 2.17 REMARK 500 O GLY D 31 O HOH D 102 2.17 REMARK 500 O HOH D 131 O HOH D 135 2.19 REMARK 500 OG SER D 19 O HOH D 104 2.19 REMARK 500 O HOH C 218 O HOH C 230 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG D 17 O HOH D 101 1545 1.35 REMARK 500 HH12 ARG A 17 O HOH A 102 1565 1.39 REMARK 500 O HOH B 234 O HOH B 239 1455 1.72 REMARK 500 O HOH A 139 O HOH C 242 1545 1.93 REMARK 500 O HOH C 237 O HOH D 126 1465 1.96 REMARK 500 O HOH B 231 O HOH A 129 1565 2.00 REMARK 500 O HOH C 230 O HOH D 134 1455 2.04 REMARK 500 O HOH A 140 O HOH A 141 1645 2.05 REMARK 500 OG SER B 1 O2 SO4 B 101 1455 2.05 REMARK 500 O HOH B 204 O HOH B 212 1565 2.06 REMARK 500 O HOH D 144 O HOH D 145 1455 2.08 REMARK 500 O HOH A 124 O HOH A 128 1655 2.11 REMARK 500 O HOH B 230 O HOH A 133 1655 2.13 REMARK 500 O HOH D 104 O HOH D 106 1545 2.13 REMARK 500 NH1 ARG D 17 O HOH D 101 1545 2.15 REMARK 500 O HOH B 238 O HOH D 136 1554 2.18 REMARK 500 O HOH B 235 O HOH B 236 1565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 3 49.79 -78.06 REMARK 500 PRO D 3 48.42 -76.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 141 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH D 145 DISTANCE = 6.85 ANGSTROMS DBREF 8VAD B 1 34 PDB 8VAD 8VAD 1 34 DBREF 8VAD A 1 34 PDB 8VAD 8VAD 1 34 DBREF 8VAD C 1 34 PDB 8VAD 8VAD 1 34 DBREF 8VAD D 1 34 PDB 8VAD 8VAD 1 34 SEQRES 1 B 34 SER GLY PRO ASN GLY GLY VAL CYS PRO VAL NLE ILE TYR SEQRES 2 B 34 LEU CYS ARG ARG ASP SER ASP CYS PRO GLY GLU CYS ILE SEQRES 3 B 34 CYS LEU GLY ASN GLY TYR CYS GLY SEQRES 1 A 34 SER GLY PRO ASN GLY GLY VAL CYS PRO VAL NLE ILE TYR SEQRES 2 A 34 LEU CYS ARG ARG ASP SER ASP CYS PRO GLY GLU CYS ILE SEQRES 3 A 34 CYS LEU GLY ASN GLY TYR CYS GLY SEQRES 1 C 34 SER GLY PRO ASN GLY GLY VAL CYS PRO VAL NLE ILE TYR SEQRES 2 C 34 LEU CYS ARG ARG ASP SER ASP CYS PRO GLY GLU CYS ILE SEQRES 3 C 34 CYS LEU GLY ASN GLY TYR CYS GLY SEQRES 1 D 34 SER GLY PRO ASN GLY GLY VAL CYS PRO VAL NLE ILE TYR SEQRES 2 D 34 LEU CYS ARG ARG ASP SER ASP CYS PRO GLY GLU CYS ILE SEQRES 3 D 34 CYS LEU GLY ASN GLY TYR CYS GLY HET NLE B 11 19 HET NLE A 11 19 HET NLE C 11 19 HET NLE D 11 19 HET SO4 B 101 5 HET SO4 C 101 5 HETNAM NLE NORLEUCINE HETNAM SO4 SULFATE ION FORMUL 1 NLE 4(C6 H13 N O2) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *170(H2 O) HELIX 1 AA1 ARG B 17 CYS B 21 5 5 HELIX 2 AA2 ARG A 17 CYS A 21 5 5 HELIX 3 AA3 ARG C 17 CYS C 21 5 5 HELIX 4 AA4 ARG D 17 CYS D 21 5 5 SHEET 1 AA1 2 ILE B 26 CYS B 27 0 SHEET 2 AA1 2 CYS B 33 GLY B 34 -1 O GLY B 34 N ILE B 26 SHEET 1 AA2 2 ILE A 26 CYS A 27 0 SHEET 2 AA2 2 CYS A 33 GLY A 34 -1 O GLY A 34 N ILE A 26 SHEET 1 AA3 2 ILE C 26 CYS C 27 0 SHEET 2 AA3 2 CYS C 33 GLY C 34 -1 O GLY C 34 N ILE C 26 SHEET 1 AA4 2 ILE D 26 CYS D 27 0 SHEET 2 AA4 2 CYS D 33 GLY D 34 -1 O GLY D 34 N ILE D 26 SSBOND 1 CYS B 8 CYS B 25 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 27 1555 1555 2.04 SSBOND 3 CYS B 21 CYS B 33 1555 1555 2.04 SSBOND 4 CYS A 8 CYS A 25 1555 1555 2.03 SSBOND 5 CYS A 15 CYS A 27 1555 1555 2.04 SSBOND 6 CYS A 21 CYS A 33 1555 1555 2.04 SSBOND 7 CYS C 8 CYS C 25 1555 1555 2.03 SSBOND 8 CYS C 15 CYS C 27 1555 1555 2.04 SSBOND 9 CYS C 21 CYS C 33 1555 1555 2.04 SSBOND 10 CYS D 8 CYS D 25 1555 1555 2.03 SSBOND 11 CYS D 15 CYS D 27 1555 1555 2.03 SSBOND 12 CYS D 21 CYS D 33 1555 1555 2.04 LINK N SER B 1 C GLY B 34 1555 1555 1.33 LINK C VAL B 10 N NLE B 11 1555 1555 1.32 LINK C NLE B 11 N ILE B 12 1555 1555 1.33 LINK N SER A 1 C GLY A 34 1555 1555 1.33 LINK C VAL A 10 N NLE A 11 1555 1555 1.33 LINK C NLE A 11 N ILE A 12 1555 1555 1.33 LINK N SER C 1 C GLY C 34 1555 1555 1.33 LINK C VAL C 10 N NLE C 11 1555 1555 1.32 LINK C NLE C 11 N ILE C 12 1555 1555 1.33 LINK N SER D 1 C GLY D 34 1555 1555 1.32 LINK C VAL D 10 N NLE D 11 1555 1555 1.33 LINK C NLE D 11 N ILE D 12 1555 1555 1.34 CRYST1 16.310 21.227 70.096 89.99 89.98 67.42 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.061312 -0.025497 -0.000020 0.00000 SCALE2 0.000000 0.051021 -0.000002 0.00000 SCALE3 0.000000 0.000000 0.014266 0.00000 MTRIX1 1 0.999955 0.001724 -0.009280 8.06785 1 MTRIX2 1 0.001654 -0.999971 -0.007486 -8.24789 1 MTRIX3 1 -0.009293 0.007471 -0.999929 -18.78180 1 MTRIX1 2 -0.999963 -0.001489 0.008490 -30.10545 1 MTRIX2 2 -0.001429 0.999974 0.007104 7.20976 1 MTRIX3 2 -0.008500 0.007092 -0.999939 16.29381 1 MTRIX1 3 -0.999998 -0.000442 0.001676 -22.01840 1 MTRIX2 3 0.000441 -1.000000 -0.000314 -1.04105 1 MTRIX3 3 0.001677 -0.000314 0.999999 35.08499 1 CONECT 1 452 CONECT 81 338 CONECT 102 116 CONECT 116 102 117 124 CONECT 117 116 118 120 125 CONECT 118 117 119 135 CONECT 119 118 CONECT 120 117 121 126 127 CONECT 121 120 122 128 129 CONECT 122 121 123 130 131 CONECT 123 122 132 133 134 CONECT 124 116 CONECT 125 117 CONECT 126 120 CONECT 127 120 CONECT 128 121 CONECT 129 121 CONECT 130 122 CONECT 131 122 CONECT 132 123 CONECT 133 123 CONECT 134 123 CONECT 135 118 CONECT 199 367 CONECT 292 445 CONECT 338 81 CONECT 367 199 CONECT 445 292 CONECT 452 1 CONECT 458 923 CONECT 538 809 CONECT 559 573 CONECT 573 559 574 581 CONECT 574 573 575 577 582 CONECT 575 574 576 592 CONECT 576 575 CONECT 577 574 578 583 584 CONECT 578 577 579 585 586 CONECT 579 578 580 587 588 CONECT 580 579 589 590 591 CONECT 581 573 CONECT 582 574 CONECT 583 577 CONECT 584 577 CONECT 585 578 CONECT 586 578 CONECT 587 579 CONECT 588 579 CONECT 589 580 CONECT 590 580 CONECT 591 580 CONECT 592 575 CONECT 656 838 CONECT 749 916 CONECT 809 538 CONECT 838 656 CONECT 916 749 CONECT 923 458 CONECT 929 1380 CONECT 1009 1266 CONECT 1030 1044 CONECT 1044 1030 1045 1052 CONECT 1045 1044 1046 1048 1053 CONECT 1046 1045 1047 1063 CONECT 1047 1046 CONECT 1048 1045 1049 1054 1055 CONECT 1049 1048 1050 1056 1057 CONECT 1050 1049 1051 1058 1059 CONECT 1051 1050 1060 1061 1062 CONECT 1052 1044 CONECT 1053 1045 CONECT 1054 1048 CONECT 1055 1048 CONECT 1056 1049 CONECT 1057 1049 CONECT 1058 1050 CONECT 1059 1050 CONECT 1060 1051 CONECT 1061 1051 CONECT 1062 1051 CONECT 1063 1046 CONECT 1127 1295 CONECT 1220 1373 CONECT 1266 1009 CONECT 1295 1127 CONECT 1373 1220 CONECT 1380 929 CONECT 1386 1837 CONECT 1466 1723 CONECT 1487 1501 CONECT 1501 1487 1502 1509 CONECT 1502 1501 1503 1505 1510 CONECT 1503 1502 1504 1520 CONECT 1504 1503 CONECT 1505 1502 1506 1511 1512 CONECT 1506 1505 1507 1513 1514 CONECT 1507 1506 1508 1515 1516 CONECT 1508 1507 1517 1518 1519 CONECT 1509 1501 CONECT 1510 1502 CONECT 1511 1505 CONECT 1512 1505 CONECT 1513 1506 CONECT 1514 1506 CONECT 1515 1507 CONECT 1516 1507 CONECT 1517 1508 CONECT 1518 1508 CONECT 1519 1508 CONECT 1520 1503 CONECT 1584 1752 CONECT 1677 1830 CONECT 1723 1466 CONECT 1752 1584 CONECT 1830 1677 CONECT 1837 1386 CONECT 1843 1844 1845 1846 1847 CONECT 1844 1843 CONECT 1845 1843 CONECT 1846 1843 CONECT 1847 1843 CONECT 1848 1849 1850 1851 1852 CONECT 1849 1848 CONECT 1850 1848 CONECT 1851 1848 CONECT 1852 1848 MASTER 638 0 6 4 8 0 0 15 1132 4 126 12 END