data_8VAW # _entry.id 8VAW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VAW pdb_00008vaw 10.2210/pdb8vaw/pdb WWPDB D_1000279810 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-04-17 2 'Structure model' 1 1 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _database_PDB_caveat.id 1 _database_PDB_caveat.text ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VAW _pdbx_database_status.recvd_initial_deposition_date 2023-12-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email fang2@uchicago.edu _pdbx_contact_author.name_first Ziyuan _pdbx_contact_author.name_last Fang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8679-6633 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fang, Z.' 1 0000-0001-8679-6633 'Szostak, J.W.' 2 0000-0003-4131-1203 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 146 _citation.language ? _citation.page_first 10632 _citation.page_last 10639 _citation.title 'Catalytic Metal Ion-Substrate Coordination during Nonenzymatic RNA Primer Extension.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.4c00323 _citation.pdbx_database_id_PubMed 38579124 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fang, Z.' 1 ? primary 'Pazienza, L.T.' 2 ? primary 'Zhang, J.' 3 ? primary 'Tam, C.P.' 4 ? primary 'Szostak, J.W.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Magnesium catalyzed nonenzymatic RNA primer extension product' 4874.075 2 ? ? ? ? 2 non-polymer nat 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 non-polymer syn "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" 347.221 2 ? ? ? ? 4 water nat water 18.015 165 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(LCC)(LCC)(LCC)(LCG)ACUUAAGUCG(G46)' _entity_poly.pdbx_seq_one_letter_code_can NNNGACUUAAGUCGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" DGP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LCC n 1 2 LCC n 1 3 LCC n 1 4 LCG n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n 1 15 G46 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DGP non-polymer n "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 G46 'RNA linking' n "GUANOSINE-5'-MONOTHIOPHOSPHATE" "5'-O-thiophosphonoguanosine" 'C10 H14 N5 O7 P S' 379.286 HOH non-polymer . WATER ? 'H2 O' 18.015 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LCC 1 1 1 LCC LCC A . n A 1 2 LCC 2 2 2 LCC LCC A . n A 1 3 LCC 3 3 3 LCC LCC A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 14 G G A . n A 1 15 G46 15 15 15 G46 1SG A . n B 1 1 LCC 1 1 1 LCC LCC B . n B 1 2 LCC 2 2 2 LCC LCC B . n B 1 3 LCC 3 3 3 LCC LCC B . n B 1 4 LCG 4 4 4 LCG LCG B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 14 G G B . n B 1 15 G46 15 15 15 G46 1SG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 201 2 MG MG A . D 2 MG 1 202 4 MG MG A . E 3 DGP 1 203 101 DGP DGP A . F 2 MG 1 201 1 MG MG B . G 2 MG 1 202 3 MG MG B . H 3 DGP 1 203 101 DGP DGP B . I 4 HOH 1 301 139 HOH HOH A . I 4 HOH 2 302 93 HOH HOH A . I 4 HOH 3 303 88 HOH HOH A . I 4 HOH 4 304 89 HOH HOH A . I 4 HOH 5 305 125 HOH HOH A . I 4 HOH 6 306 138 HOH HOH A . I 4 HOH 7 307 7 HOH HOH A . I 4 HOH 8 308 96 HOH HOH A . I 4 HOH 9 309 87 HOH HOH A . I 4 HOH 10 310 21 HOH HOH A . I 4 HOH 11 311 5 HOH HOH A . I 4 HOH 12 312 117 HOH HOH A . I 4 HOH 13 313 95 HOH HOH A . I 4 HOH 14 314 111 HOH HOH A . I 4 HOH 15 315 148 HOH HOH A . I 4 HOH 16 316 67 HOH HOH A . I 4 HOH 17 317 103 HOH HOH A . I 4 HOH 18 318 72 HOH HOH A . I 4 HOH 19 319 65 HOH HOH A . I 4 HOH 20 320 113 HOH HOH A . I 4 HOH 21 321 124 HOH HOH A . I 4 HOH 22 322 114 HOH HOH A . I 4 HOH 23 323 126 HOH HOH A . I 4 HOH 24 324 128 HOH HOH A . I 4 HOH 25 325 79 HOH HOH A . I 4 HOH 26 326 47 HOH HOH A . I 4 HOH 27 327 46 HOH HOH A . I 4 HOH 28 328 17 HOH HOH A . I 4 HOH 29 329 129 HOH HOH A . I 4 HOH 30 330 15 HOH HOH A . I 4 HOH 31 331 55 HOH HOH A . I 4 HOH 32 332 92 HOH HOH A . I 4 HOH 33 333 86 HOH HOH A . I 4 HOH 34 334 68 HOH HOH A . I 4 HOH 35 335 24 HOH HOH A . I 4 HOH 36 336 98 HOH HOH A . I 4 HOH 37 337 6 HOH HOH A . I 4 HOH 38 338 164 HOH HOH A . I 4 HOH 39 339 19 HOH HOH A . I 4 HOH 40 340 81 HOH HOH A . I 4 HOH 41 341 97 HOH HOH A . I 4 HOH 42 342 62 HOH HOH A . I 4 HOH 43 343 12 HOH HOH A . I 4 HOH 44 344 20 HOH HOH A . I 4 HOH 45 345 4 HOH HOH A . I 4 HOH 46 346 102 HOH HOH A . I 4 HOH 47 347 10 HOH HOH A . I 4 HOH 48 348 45 HOH HOH A . I 4 HOH 49 349 66 HOH HOH A . I 4 HOH 50 350 60 HOH HOH A . I 4 HOH 51 351 118 HOH HOH A . I 4 HOH 52 352 140 HOH HOH A . I 4 HOH 53 353 85 HOH HOH A . I 4 HOH 54 354 131 HOH HOH A . I 4 HOH 55 355 16 HOH HOH A . I 4 HOH 56 356 149 HOH HOH A . I 4 HOH 57 357 44 HOH HOH A . I 4 HOH 58 358 18 HOH HOH A . I 4 HOH 59 359 143 HOH HOH A . I 4 HOH 60 360 110 HOH HOH A . I 4 HOH 61 361 22 HOH HOH A . I 4 HOH 62 362 52 HOH HOH A . I 4 HOH 63 363 133 HOH HOH A . I 4 HOH 64 364 8 HOH HOH A . I 4 HOH 65 365 64 HOH HOH A . I 4 HOH 66 366 136 HOH HOH A . I 4 HOH 67 367 80 HOH HOH A . I 4 HOH 68 368 157 HOH HOH A . I 4 HOH 69 369 156 HOH HOH A . I 4 HOH 70 370 119 HOH HOH A . I 4 HOH 71 371 153 HOH HOH A . I 4 HOH 72 372 82 HOH HOH A . I 4 HOH 73 373 147 HOH HOH A . I 4 HOH 74 374 83 HOH HOH A . I 4 HOH 75 375 163 HOH HOH A . J 4 HOH 1 301 141 HOH HOH B . J 4 HOH 2 302 132 HOH HOH B . J 4 HOH 3 303 57 HOH HOH B . J 4 HOH 4 304 23 HOH HOH B . J 4 HOH 5 305 74 HOH HOH B . J 4 HOH 6 306 48 HOH HOH B . J 4 HOH 7 307 134 HOH HOH B . J 4 HOH 8 308 51 HOH HOH B . J 4 HOH 9 309 101 HOH HOH B . J 4 HOH 10 310 14 HOH HOH B . J 4 HOH 11 311 28 HOH HOH B . J 4 HOH 12 312 69 HOH HOH B . J 4 HOH 13 313 9 HOH HOH B . J 4 HOH 14 314 53 HOH HOH B . J 4 HOH 15 315 58 HOH HOH B . J 4 HOH 16 316 137 HOH HOH B . J 4 HOH 17 317 25 HOH HOH B . J 4 HOH 18 318 90 HOH HOH B . J 4 HOH 19 319 50 HOH HOH B . J 4 HOH 20 320 78 HOH HOH B . J 4 HOH 21 321 73 HOH HOH B . J 4 HOH 22 322 31 HOH HOH B . J 4 HOH 23 323 41 HOH HOH B . J 4 HOH 24 324 107 HOH HOH B . J 4 HOH 25 325 99 HOH HOH B . J 4 HOH 26 326 106 HOH HOH B . J 4 HOH 27 327 29 HOH HOH B . J 4 HOH 28 328 109 HOH HOH B . J 4 HOH 29 329 36 HOH HOH B . J 4 HOH 30 330 63 HOH HOH B . J 4 HOH 31 331 77 HOH HOH B . J 4 HOH 32 332 105 HOH HOH B . J 4 HOH 33 333 115 HOH HOH B . J 4 HOH 34 334 34 HOH HOH B . J 4 HOH 35 335 32 HOH HOH B . J 4 HOH 36 336 3 HOH HOH B . J 4 HOH 37 337 61 HOH HOH B . J 4 HOH 38 338 49 HOH HOH B . J 4 HOH 39 339 135 HOH HOH B . J 4 HOH 40 340 42 HOH HOH B . J 4 HOH 41 341 108 HOH HOH B . J 4 HOH 42 342 1 HOH HOH B . J 4 HOH 43 343 71 HOH HOH B . J 4 HOH 44 344 27 HOH HOH B . J 4 HOH 45 345 38 HOH HOH B . J 4 HOH 46 346 13 HOH HOH B . J 4 HOH 47 347 37 HOH HOH B . J 4 HOH 48 348 11 HOH HOH B . J 4 HOH 49 349 120 HOH HOH B . J 4 HOH 50 350 70 HOH HOH B . J 4 HOH 51 351 54 HOH HOH B . J 4 HOH 52 352 130 HOH HOH B . J 4 HOH 53 353 75 HOH HOH B . J 4 HOH 54 354 100 HOH HOH B . J 4 HOH 55 355 35 HOH HOH B . J 4 HOH 56 356 33 HOH HOH B . J 4 HOH 57 357 154 HOH HOH B . J 4 HOH 58 358 166 HOH HOH B . J 4 HOH 59 359 91 HOH HOH B . J 4 HOH 60 360 150 HOH HOH B . J 4 HOH 61 361 94 HOH HOH B . J 4 HOH 62 362 146 HOH HOH B . J 4 HOH 63 363 123 HOH HOH B . J 4 HOH 64 364 40 HOH HOH B . J 4 HOH 65 365 26 HOH HOH B . J 4 HOH 66 366 144 HOH HOH B . J 4 HOH 67 367 104 HOH HOH B . J 4 HOH 68 368 142 HOH HOH B . J 4 HOH 69 369 56 HOH HOH B . J 4 HOH 70 370 152 HOH HOH B . J 4 HOH 71 371 43 HOH HOH B . J 4 HOH 72 372 145 HOH HOH B . J 4 HOH 73 373 165 HOH HOH B . J 4 HOH 74 374 84 HOH HOH B . J 4 HOH 75 375 59 HOH HOH B . J 4 HOH 76 376 39 HOH HOH B . J 4 HOH 77 377 159 HOH HOH B . J 4 HOH 78 378 158 HOH HOH B . J 4 HOH 79 379 2 HOH HOH B . J 4 HOH 80 380 155 HOH HOH B . J 4 HOH 81 381 161 HOH HOH B . J 4 HOH 82 382 112 HOH HOH B . J 4 HOH 83 383 162 HOH HOH B . J 4 HOH 84 384 116 HOH HOH B . J 4 HOH 85 385 30 HOH HOH B . J 4 HOH 86 386 151 HOH HOH B . J 4 HOH 87 387 76 HOH HOH B . J 4 HOH 88 388 122 HOH HOH B . J 4 HOH 89 389 127 HOH HOH B . J 4 HOH 90 390 160 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A DGP 203 ? OP3 ? E DGP 1 OP3 2 1 N 1 B DGP 203 ? OP3 ? H DGP 1 OP3 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0419 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8VAW _cell.details ? _cell.formula_units_Z ? _cell.length_a 43.570 _cell.length_a_esd ? _cell.length_b 43.570 _cell.length_b_esd ? _cell.length_c 84.342 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VAW _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VAW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.19 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.5 M Sodium chloride, 50 mM TRIS pH 7.5, 0.25 M Magnesium chloride.' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-04-25 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97648 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.3' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97648 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.3 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8VAW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.25 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 27390 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 50.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.889 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.042 _reflns.pdbx_Rpim_I_all 0.014 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.989 _reflns.pdbx_CC_star 0.997 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.27 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 968 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.pdbx_chi_squared 1.130 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.499 _reflns_shell.pdbx_Rpim_I_all 0.255 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.842 _reflns_shell.pdbx_CC_star 0.956 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 82.0 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.424 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.001 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 0.001 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.003 _refine.B_iso_max ? _refine.B_iso_mean 13.775 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.975 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8VAW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.250 _refine.ls_d_res_low 37.733 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 24841 _refine.ls_number_reflns_R_free 1156 _refine.ls_number_reflns_R_work 23685 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.034 _refine.ls_percent_reflns_R_free 4.654 _refine.ls_R_factor_all 0.188 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.1908 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1878 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.050 _refine.pdbx_overall_ESU_R_Free 0.047 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.688 _refine.overall_SU_ML 0.030 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.250 _refine_hist.d_res_low 37.733 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 859 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 690 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.022 0.016 774 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.028 0.023 348 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.926 2.206 1178 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 3.468 2.340 822 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.079 5.000 16 ? r_dihedral_angle_other_2_deg ? ? 'X-RAY DIFFRACTION' ? 0.119 0.200 152 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 1.693 0.200 20 ? r_chiral_restr_other ? ? 'X-RAY DIFFRACTION' ? 0.024 0.021 400 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.022 128 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.189 0.200 84 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.204 0.200 440 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.247 0.200 307 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.265 0.200 202 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.273 0.200 116 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.122 0.200 25 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.167 0.200 43 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.178 0.200 34 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 2.935 1.653 774 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.934 1.653 774 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 3.753 2.980 1178 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.752 2.980 1179 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.495 20.782 1159 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 5.160 20.421 1098 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.250 1.282 . . 41 702 38.1809 . . . . 0.256 . . . . . . . . . . . 0.280 'X-RAY DIFFRACTION' 1.282 1.318 . . 73 1478 82.5000 . . . . 0.232 . . . . . . . . . . . 0.287 'X-RAY DIFFRACTION' 1.318 1.356 . . 71 1686 98.7634 . . . . . . . . . . . . . . . . 0.189 'X-RAY DIFFRACTION' 1.356 1.397 . . 79 1699 100.0000 . . . . 0.208 . . . . . . . . . . . 0.222 'X-RAY DIFFRACTION' 1.397 1.443 . . 74 1636 99.9416 . . . . 0.191 . . . . . . . . . . . 0.211 'X-RAY DIFFRACTION' 1.443 1.494 . . 84 1549 100.0000 . . . . 0.191 . . . . . . . . . . . 0.226 'X-RAY DIFFRACTION' 1.494 1.550 . . 64 1565 100.0000 . . . . 0.185 . . . . . . . . . . . 0.199 'X-RAY DIFFRACTION' 1.550 1.613 . . 71 1489 100.0000 . . . . . . . . . . . . . . . . 0.191 'X-RAY DIFFRACTION' 1.613 1.685 . . 69 1405 99.9322 . . . . 0.184 . . . . . . . . . . . 0.247 'X-RAY DIFFRACTION' 1.685 1.767 . . 66 1359 100.0000 . . . . 0.183 . . . . . . . . . . . 0.205 'X-RAY DIFFRACTION' 1.767 1.862 . . 63 1296 100.0000 . . . . 0.182 . . . . . . . . . . . 0.206 'X-RAY DIFFRACTION' 1.862 1.975 . . 57 1227 99.8445 . . . . 0.179 . . . . . . . . . . . 0.180 'X-RAY DIFFRACTION' 1.975 2.111 . . 62 1166 99.9186 . . . . . . . . . . . . . . . . 0.159 'X-RAY DIFFRACTION' 2.111 2.279 . . 41 1103 100.0000 . . . . 0.188 . . . . . . . . . . . 0.208 'X-RAY DIFFRACTION' 2.279 2.496 . . 58 990 99.9047 . . . . 0.186 . . . . . . . . . . . 0.239 'X-RAY DIFFRACTION' 2.496 2.789 . . 57 910 100.0000 . . . . 0.219 . . . . . . . . . . . 0.194 'X-RAY DIFFRACTION' 2.789 3.217 . . 39 807 99.2958 . . . . 0.191 . . . . . . . . . . . 0.239 'X-RAY DIFFRACTION' 3.217 3.933 . . 36 708 99.2000 . . . . . . . . . . . . . . . . 0.139 'X-RAY DIFFRACTION' 3.933 5.533 . . 35 557 100.0000 . . . . . . . . . . . . . . . . 0.136 'X-RAY DIFFRACTION' 5.533 37.733 . . 16 352 99.4595 . . . . . . . . . . . . . . . . 0.190 # _struct.entry_id 8VAW _struct.title 'Magnesium catalyzed primer extension product with 14mer primer and mixed phosphorothioate activated G monomer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VAW _struct_keywords.text 'Phosphorothioate, Magnesium, oxophilic metal ion, nonenzymatic primer extension, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8VAW _struct_ref.pdbx_db_accession 8VAW _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8VAW A 1 ? 15 ? 8VAW 1 ? 15 ? 1 15 2 1 8VAW B 1 ? 15 ? 8VAW 1 ? 15 ? 1 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LCC 1 "O3'" ? ? ? 1_555 A LCC 2 P ? ? A LCC 1 A LCC 2 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale2 covale both ? A LCC 2 "O3'" ? ? ? 1_555 A LCC 3 P ? ? A LCC 2 A LCC 3 1_555 ? ? ? ? ? ? ? 1.592 ? ? covale3 covale both ? A LCC 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCC 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A LCG 4 A A 5 1_555 ? ? ? ? ? ? ? 1.581 ? ? covale5 covale both ? A G 14 "O3'" ? ? ? 1_555 A G46 15 P ? ? A G 14 A G46 15 1_555 ? ? ? ? ? ? ? 1.635 ? ? covale6 covale both ? B LCC 1 "O3'" ? ? ? 1_555 B LCC 2 P ? ? B LCC 1 B LCC 2 1_555 ? ? ? ? ? ? ? 1.662 ? ? covale7 covale both ? B LCC 2 "O3'" ? ? ? 1_555 B LCC 3 P ? ? B LCC 2 B LCC 3 1_555 ? ? ? ? ? ? ? 1.658 ? ? covale8 covale both ? B LCC 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCC 3 B LCG 4 1_555 ? ? ? ? ? ? ? 1.648 ? ? covale9 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B LCG 4 B A 5 1_555 ? ? ? ? ? ? ? 1.578 ? ? covale10 covale both ? B G 14 "O3'" ? ? ? 1_555 B G46 15 P ? ? B G 14 B G46 15 1_555 ? ? ? ? ? ? ? 1.624 ? ? metalc1 metalc ? ? A G46 15 "O3'" ? ? ? 1_555 D MG . MG ? ? A G46 15 A MG 202 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc2 metalc ? ? A G46 15 "O2'" ? ? ? 1_555 D MG . MG ? ? A G46 15 A MG 202 1_555 ? ? ? ? ? ? ? 2.270 ? ? metalc3 metalc ? ? A G46 15 "O3'" ? ? ? 1_555 D MG . MG ? ? A G46 15 A MG 202 2_665 ? ? ? ? ? ? ? 2.301 ? ? metalc4 metalc ? ? A G46 15 "O2'" ? ? ? 1_555 D MG . MG ? ? A G46 15 A MG 202 2_665 ? ? ? ? ? ? ? 2.270 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 201 A HOH 311 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 201 A HOH 337 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 201 A HOH 345 1_555 ? ? ? ? ? ? ? 2.078 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 201 B HOH 336 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 201 B HOH 342 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 J HOH . O ? ? A MG 201 B HOH 379 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc11 metalc ? ? I HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 343 B MG 201 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc12 metalc ? ? I HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 347 B MG 201 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc13 metalc ? ? I HOH . O ? ? ? 1_555 F MG . MG ? ? A HOH 364 B MG 201 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc14 metalc ? ? B G46 15 "O3'" ? ? ? 1_555 G MG . MG ? ? B G46 15 B MG 202 1_555 ? ? ? ? ? ? ? 2.439 ? ? metalc15 metalc ? ? B G46 15 "O2'" ? ? ? 1_555 G MG . MG ? ? B G46 15 B MG 202 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc16 metalc ? ? B G46 15 "O3'" ? ? ? 1_555 G MG . MG ? ? B G46 15 B MG 202 2_665 ? ? ? ? ? ? ? 2.440 ? ? metalc17 metalc ? ? B G46 15 "O2'" ? ? ? 1_555 G MG . MG ? ? B G46 15 B MG 202 2_665 ? ? ? ? ? ? ? 2.367 ? ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 201 B HOH 313 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 201 B HOH 346 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 J HOH . O ? ? B MG 201 B HOH 348 1_555 ? ? ? ? ? ? ? 2.089 ? ? hydrog1 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 B C 13 N3 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 B C 13 O2 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B C 13 N4 ? ? A LCG 4 B C 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 13 N3 ? ? ? 1_555 B LCG 4 N1 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 13 N4 ? ? ? 1_555 B LCG 4 O6 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 13 O2 ? ? ? 1_555 B LCG 4 N2 ? ? A C 13 B LCG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O3'" ? A G46 15 ? A G46 15 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 "O2'" ? A G46 15 ? A G46 15 ? 1_555 67.6 ? 2 "O3'" ? A G46 15 ? A G46 15 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 "O3'" ? A G46 15 ? A G46 15 ? 1_555 0.0 ? 3 "O2'" ? A G46 15 ? A G46 15 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 "O3'" ? A G46 15 ? A G46 15 ? 1_555 67.6 ? 4 "O3'" ? A G46 15 ? A G46 15 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 "O2'" ? A G46 15 ? A G46 15 ? 1_555 67.6 ? 5 "O2'" ? A G46 15 ? A G46 15 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 "O2'" ? A G46 15 ? A G46 15 ? 1_555 0.0 ? 6 "O3'" ? A G46 15 ? A G46 15 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 "O2'" ? A G46 15 ? A G46 15 ? 1_555 67.6 ? 7 O ? I HOH . ? A HOH 311 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? I HOH . ? A HOH 337 ? 1_555 93.0 ? 8 O ? I HOH . ? A HOH 311 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? I HOH . ? A HOH 345 ? 1_555 92.2 ? 9 O ? I HOH . ? A HOH 337 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? I HOH . ? A HOH 345 ? 1_555 88.3 ? 10 O ? I HOH . ? A HOH 311 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 336 ? 1_555 86.7 ? 11 O ? I HOH . ? A HOH 337 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 336 ? 1_555 89.1 ? 12 O ? I HOH . ? A HOH 345 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 336 ? 1_555 177.1 ? 13 O ? I HOH . ? A HOH 311 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 342 ? 1_555 87.7 ? 14 O ? I HOH . ? A HOH 337 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 342 ? 1_555 177.0 ? 15 O ? I HOH . ? A HOH 345 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 342 ? 1_555 88.8 ? 16 O ? J HOH . ? B HOH 336 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 342 ? 1_555 93.8 ? 17 O ? I HOH . ? A HOH 311 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 379 ? 1_555 174.3 ? 18 O ? I HOH . ? A HOH 337 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 379 ? 1_555 90.8 ? 19 O ? I HOH . ? A HOH 345 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 379 ? 1_555 92.1 ? 20 O ? J HOH . ? B HOH 336 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 379 ? 1_555 89.2 ? 21 O ? J HOH . ? B HOH 342 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 O ? J HOH . ? B HOH 379 ? 1_555 88.7 ? 22 O ? I HOH . ? A HOH 343 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? I HOH . ? A HOH 347 ? 1_555 94.0 ? 23 O ? I HOH . ? A HOH 343 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? I HOH . ? A HOH 364 ? 1_555 90.2 ? 24 O ? I HOH . ? A HOH 347 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? I HOH . ? A HOH 364 ? 1_555 87.7 ? 25 O ? I HOH . ? A HOH 343 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 313 ? 1_555 87.2 ? 26 O ? I HOH . ? A HOH 347 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 313 ? 1_555 88.5 ? 27 O ? I HOH . ? A HOH 364 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 313 ? 1_555 175.2 ? 28 O ? I HOH . ? A HOH 343 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 346 ? 1_555 177.9 ? 29 O ? I HOH . ? A HOH 347 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 346 ? 1_555 87.5 ? 30 O ? I HOH . ? A HOH 364 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 346 ? 1_555 91.3 ? 31 O ? J HOH . ? B HOH 313 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 346 ? 1_555 91.4 ? 32 O ? I HOH . ? A HOH 343 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 348 ? 1_555 87.9 ? 33 O ? I HOH . ? A HOH 347 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 348 ? 1_555 177.8 ? 34 O ? I HOH . ? A HOH 364 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 348 ? 1_555 91.1 ? 35 O ? J HOH . ? B HOH 313 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 348 ? 1_555 92.8 ? 36 O ? J HOH . ? B HOH 346 ? 1_555 MG ? F MG . ? B MG 201 ? 1_555 O ? J HOH . ? B HOH 348 ? 1_555 90.6 ? 37 "O3'" ? B G46 15 ? B G46 15 ? 1_555 MG ? G MG . ? B MG 202 ? 1_555 "O2'" ? B G46 15 ? B G46 15 ? 1_555 68.4 ? 38 "O3'" ? B G46 15 ? B G46 15 ? 1_555 MG ? G MG . ? B MG 202 ? 1_555 "O3'" ? B G46 15 ? B G46 15 ? 1_555 0.0 ? 39 "O2'" ? B G46 15 ? B G46 15 ? 1_555 MG ? G MG . ? B MG 202 ? 1_555 "O3'" ? B G46 15 ? B G46 15 ? 1_555 68.4 ? 40 "O3'" ? B G46 15 ? B G46 15 ? 1_555 MG ? G MG . ? B MG 202 ? 1_555 "O2'" ? B G46 15 ? B G46 15 ? 1_555 68.4 ? 41 "O2'" ? B G46 15 ? B G46 15 ? 1_555 MG ? G MG . ? B MG 202 ? 1_555 "O2'" ? B G46 15 ? B G46 15 ? 1_555 0.0 ? 42 "O3'" ? B G46 15 ? B G46 15 ? 1_555 MG ? G MG . ? B MG 202 ? 1_555 "O2'" ? B G46 15 ? B G46 15 ? 1_555 68.4 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 322 ? ? O B HOH 385 ? ? 1.99 2 1 O B HOH 385 ? ? O B HOH 388 ? ? 2.03 3 1 "C5'" B DGP 203 ? ? O B HOH 304 ? ? 2.05 4 1 O B HOH 327 ? ? O B HOH 385 ? ? 2.11 5 1 O B HOH 307 ? ? O B HOH 387 ? ? 2.12 6 1 O A HOH 363 ? ? O B HOH 378 ? ? 2.18 7 1 O B HOH 329 ? ? O B HOH 387 ? ? 2.19 8 1 O A HOH 320 ? ? O A HOH 366 ? ? 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 11 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 11 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 11 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.47 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -6.23 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id U _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 7 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.062 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 202 ? D MG . 2 1 B MG 202 ? G MG . 3 1 A HOH 336 ? I HOH . 4 1 A HOH 341 ? I HOH . 5 1 A HOH 375 ? I HOH . 6 1 B HOH 305 ? J HOH . 7 1 B HOH 321 ? J HOH . 8 1 B HOH 383 ? J HOH . # _pdbx_entry_details.entry_id 8VAW _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 DGP P P N N 73 DGP OP1 O N N 74 DGP OP2 O N N 75 DGP OP3 O N N 76 DGP "O5'" O N N 77 DGP "C5'" C N N 78 DGP "C4'" C N R 79 DGP "O4'" O N N 80 DGP "C3'" C N S 81 DGP "O3'" O N N 82 DGP "C2'" C N N 83 DGP "C1'" C N R 84 DGP N9 N Y N 85 DGP C8 C Y N 86 DGP N7 N Y N 87 DGP C5 C Y N 88 DGP C6 C N N 89 DGP O6 O N N 90 DGP N1 N N N 91 DGP C2 C N N 92 DGP N2 N N N 93 DGP N3 N N N 94 DGP C4 C Y N 95 DGP HOP2 H N N 96 DGP HOP3 H N N 97 DGP "H5'" H N N 98 DGP "H5''" H N N 99 DGP "H4'" H N N 100 DGP "H3'" H N N 101 DGP "HO3'" H N N 102 DGP "H2'" H N N 103 DGP "H2''" H N N 104 DGP "H1'" H N N 105 DGP H8 H N N 106 DGP HN1 H N N 107 DGP HN21 H N N 108 DGP HN22 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 G46 P P N N 148 G46 O1P O N N 149 G46 S2P S N N 150 G46 O3P O N N 151 G46 "O5'" O N N 152 G46 "C5'" C N N 153 G46 "C4'" C N R 154 G46 "O4'" O N N 155 G46 "C3'" C N S 156 G46 "O3'" O N N 157 G46 "C2'" C N R 158 G46 "C1'" C N R 159 G46 "O2'" O N N 160 G46 N9 N Y N 161 G46 C8 C Y N 162 G46 N7 N Y N 163 G46 C5 C Y N 164 G46 C6 C N N 165 G46 O6 O N N 166 G46 N1 N N N 167 G46 C2 C N N 168 G46 N2 N N N 169 G46 N3 N N N 170 G46 C4 C Y N 171 G46 H1P H N N 172 G46 HS H N N 173 G46 "H5'1" H N N 174 G46 "H5'2" H N N 175 G46 "H4'" H N N 176 G46 "H3'" H N N 177 G46 HA H N N 178 G46 "H2'" H N N 179 G46 "H1'" H N N 180 G46 HB H N N 181 G46 H8 H N N 182 G46 H1 H N N 183 G46 H2N1 H N N 184 G46 H2N2 H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 LCC "O5'" O N N 189 LCC "C5'" C N N 190 LCC "C4'" C N R 191 LCC "O4'" O N N 192 LCC "C1'" C N R 193 LCC N1 N N N 194 LCC C6 C N N 195 LCC C5 C N N 196 LCC C5M C N N 197 LCC C4 C N N 198 LCC N4 N N N 199 LCC N3 N N N 200 LCC C2 C N N 201 LCC O2 O N N 202 LCC "C3'" C N S 203 LCC "C2'" C N R 204 LCC "O2'" O N N 205 LCC "O3'" O N N 206 LCC "C6'" C N N 207 LCC P P N N 208 LCC O1P O N N 209 LCC O2P O N N 210 LCC OXT O N N 211 LCC "H5'1" H N N 212 LCC "H5'2" H N N 213 LCC "H1'" H N N 214 LCC H6 H N N 215 LCC H5M1 H N N 216 LCC H5M2 H N N 217 LCC H5M3 H N N 218 LCC H41 H N N 219 LCC H42 H N N 220 LCC "H3'" H N N 221 LCC "H2'1" H N N 222 LCC H3T H N N 223 LCC "H6'1" H N N 224 LCC "H6'2" H N N 225 LCC H1P H N N 226 LCC HXT H N N 227 LCG P P N N 228 LCG OP1 O N N 229 LCG "O5'" O N N 230 LCG "C5'" C N N 231 LCG "C3'" C N S 232 LCG "C6'" C N N 233 LCG N9 N Y N 234 LCG C8 C Y N 235 LCG C4 C Y N 236 LCG N7 N Y N 237 LCG C5 C Y N 238 LCG C6 C N N 239 LCG "C2'" C N R 240 LCG O6 O N N 241 LCG "C4'" C N R 242 LCG "C1'" C N R 243 LCG C2 C N N 244 LCG N1 N N N 245 LCG "O4'" O N N 246 LCG OP2 O N N 247 LCG N2 N N N 248 LCG N3 N N N 249 LCG "O2'" O N N 250 LCG "O3'" O N N 251 LCG OP3 O N N 252 LCG "H5'" H N N 253 LCG "H5''" H N N 254 LCG "H3'" H N N 255 LCG "H6'1" H N N 256 LCG "H6'2" H N N 257 LCG H8 H N N 258 LCG "H2'" H N N 259 LCG "H1'" H N N 260 LCG H1 H N N 261 LCG HOP2 H N N 262 LCG H21 H N N 263 LCG H22 H N N 264 LCG "HO3'" H N N 265 LCG HOP3 H N N 266 MG MG MG N N 267 U OP3 O N N 268 U P P N N 269 U OP1 O N N 270 U OP2 O N N 271 U "O5'" O N N 272 U "C5'" C N N 273 U "C4'" C N R 274 U "O4'" O N N 275 U "C3'" C N S 276 U "O3'" O N N 277 U "C2'" C N R 278 U "O2'" O N N 279 U "C1'" C N R 280 U N1 N N N 281 U C2 C N N 282 U O2 O N N 283 U N3 N N N 284 U C4 C N N 285 U O4 O N N 286 U C5 C N N 287 U C6 C N N 288 U HOP3 H N N 289 U HOP2 H N N 290 U "H5'" H N N 291 U "H5''" H N N 292 U "H4'" H N N 293 U "H3'" H N N 294 U "HO3'" H N N 295 U "H2'" H N N 296 U "HO2'" H N N 297 U "H1'" H N N 298 U H3 H N N 299 U H5 H N N 300 U H6 H N N 301 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DGP P OP1 doub N N 76 DGP P OP2 sing N N 77 DGP P OP3 sing N N 78 DGP P "O5'" sing N N 79 DGP OP2 HOP2 sing N N 80 DGP OP3 HOP3 sing N N 81 DGP "O5'" "C5'" sing N N 82 DGP "C5'" "C4'" sing N N 83 DGP "C5'" "H5'" sing N N 84 DGP "C5'" "H5''" sing N N 85 DGP "C4'" "O4'" sing N N 86 DGP "C4'" "C3'" sing N N 87 DGP "C4'" "H4'" sing N N 88 DGP "O4'" "C1'" sing N N 89 DGP "C3'" "O3'" sing N N 90 DGP "C3'" "C2'" sing N N 91 DGP "C3'" "H3'" sing N N 92 DGP "O3'" "HO3'" sing N N 93 DGP "C2'" "C1'" sing N N 94 DGP "C2'" "H2'" sing N N 95 DGP "C2'" "H2''" sing N N 96 DGP "C1'" N9 sing N N 97 DGP "C1'" "H1'" sing N N 98 DGP N9 C8 sing Y N 99 DGP N9 C4 sing Y N 100 DGP C8 N7 doub Y N 101 DGP C8 H8 sing N N 102 DGP N7 C5 sing Y N 103 DGP C5 C6 sing N N 104 DGP C5 C4 doub Y N 105 DGP C6 O6 doub N N 106 DGP C6 N1 sing N N 107 DGP N1 C2 sing N N 108 DGP N1 HN1 sing N N 109 DGP C2 N2 sing N N 110 DGP C2 N3 doub N N 111 DGP N2 HN21 sing N N 112 DGP N2 HN22 sing N N 113 DGP N3 C4 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 G46 P O1P sing N N 155 G46 P S2P sing N N 156 G46 P O3P doub N N 157 G46 P "O5'" sing N N 158 G46 O1P H1P sing N N 159 G46 S2P HS sing N N 160 G46 "O5'" "C5'" sing N N 161 G46 "C5'" "C4'" sing N N 162 G46 "C5'" "H5'1" sing N N 163 G46 "C5'" "H5'2" sing N N 164 G46 "C4'" "O4'" sing N N 165 G46 "C4'" "C3'" sing N N 166 G46 "C4'" "H4'" sing N N 167 G46 "O4'" "C1'" sing N N 168 G46 "C3'" "O3'" sing N N 169 G46 "C3'" "C2'" sing N N 170 G46 "C3'" "H3'" sing N N 171 G46 "O3'" HA sing N N 172 G46 "C2'" "C1'" sing N N 173 G46 "C2'" "O2'" sing N N 174 G46 "C2'" "H2'" sing N N 175 G46 "C1'" N9 sing N N 176 G46 "C1'" "H1'" sing N N 177 G46 "O2'" HB sing N N 178 G46 N9 C8 sing Y N 179 G46 N9 C4 sing Y N 180 G46 C8 N7 doub Y N 181 G46 C8 H8 sing N N 182 G46 N7 C5 sing Y N 183 G46 C5 C6 sing N N 184 G46 C5 C4 doub Y N 185 G46 C6 O6 doub N N 186 G46 C6 N1 sing N N 187 G46 N1 C2 sing N N 188 G46 N1 H1 sing N N 189 G46 C2 N2 sing N N 190 G46 C2 N3 doub N N 191 G46 N2 H2N1 sing N N 192 G46 N2 H2N2 sing N N 193 G46 N3 C4 sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 LCC "O5'" "C5'" sing N N 197 LCC "O5'" P sing N N 198 LCC "C5'" "C4'" sing N N 199 LCC "C5'" "H5'1" sing N N 200 LCC "C5'" "H5'2" sing N N 201 LCC "C4'" "O4'" sing N N 202 LCC "C4'" "C3'" sing N N 203 LCC "C4'" "C6'" sing N N 204 LCC "O4'" "C1'" sing N N 205 LCC "C1'" N1 sing N N 206 LCC "C1'" "C2'" sing N N 207 LCC "C1'" "H1'" sing N N 208 LCC N1 C6 sing N N 209 LCC N1 C2 sing N N 210 LCC C6 C5 doub N N 211 LCC C6 H6 sing N N 212 LCC C5 C5M sing N N 213 LCC C5 C4 sing N N 214 LCC C5M H5M1 sing N N 215 LCC C5M H5M2 sing N N 216 LCC C5M H5M3 sing N N 217 LCC C4 N4 sing N N 218 LCC C4 N3 doub N N 219 LCC N4 H41 sing N N 220 LCC N4 H42 sing N N 221 LCC N3 C2 sing N N 222 LCC C2 O2 doub N N 223 LCC "C3'" "C2'" sing N N 224 LCC "C3'" "O3'" sing N N 225 LCC "C3'" "H3'" sing N N 226 LCC "C2'" "O2'" sing N N 227 LCC "C2'" "H2'1" sing N N 228 LCC "O2'" "C6'" sing N N 229 LCC "O3'" H3T sing N N 230 LCC "C6'" "H6'1" sing N N 231 LCC "C6'" "H6'2" sing N N 232 LCC P O1P sing N N 233 LCC P O2P doub N N 234 LCC P OXT sing N N 235 LCC O1P H1P sing N N 236 LCC OXT HXT sing N N 237 LCG P OP1 doub N N 238 LCG P "O5'" sing N N 239 LCG P OP2 sing N N 240 LCG P OP3 sing N N 241 LCG "O5'" "C5'" sing N N 242 LCG "C5'" "C4'" sing N N 243 LCG "C5'" "H5'" sing N N 244 LCG "C5'" "H5''" sing N N 245 LCG "C3'" "C2'" sing N N 246 LCG "C3'" "C4'" sing N N 247 LCG "C3'" "O3'" sing N N 248 LCG "C3'" "H3'" sing N N 249 LCG "C6'" "C4'" sing N N 250 LCG "C6'" "O2'" sing N N 251 LCG "C6'" "H6'1" sing N N 252 LCG "C6'" "H6'2" sing N N 253 LCG N9 C8 sing Y N 254 LCG N9 C4 sing Y N 255 LCG N9 "C1'" sing N N 256 LCG C8 N7 doub Y N 257 LCG C8 H8 sing N N 258 LCG C4 C5 doub Y N 259 LCG C4 N3 sing N N 260 LCG N7 C5 sing Y N 261 LCG C5 C6 sing N N 262 LCG C6 O6 doub N N 263 LCG C6 N1 sing N N 264 LCG "C2'" "C1'" sing N N 265 LCG "C2'" "O2'" sing N N 266 LCG "C2'" "H2'" sing N N 267 LCG "C4'" "O4'" sing N N 268 LCG "C1'" "O4'" sing N N 269 LCG "C1'" "H1'" sing N N 270 LCG C2 N1 sing N N 271 LCG C2 N2 sing N N 272 LCG C2 N3 doub N N 273 LCG N1 H1 sing N N 274 LCG OP2 HOP2 sing N N 275 LCG N2 H21 sing N N 276 LCG N2 H22 sing N N 277 LCG "O3'" "HO3'" sing N N 278 LCG OP3 HOP3 sing N N 279 U OP3 P sing N N 280 U OP3 HOP3 sing N N 281 U P OP1 doub N N 282 U P OP2 sing N N 283 U P "O5'" sing N N 284 U OP2 HOP2 sing N N 285 U "O5'" "C5'" sing N N 286 U "C5'" "C4'" sing N N 287 U "C5'" "H5'" sing N N 288 U "C5'" "H5''" sing N N 289 U "C4'" "O4'" sing N N 290 U "C4'" "C3'" sing N N 291 U "C4'" "H4'" sing N N 292 U "O4'" "C1'" sing N N 293 U "C3'" "O3'" sing N N 294 U "C3'" "C2'" sing N N 295 U "C3'" "H3'" sing N N 296 U "O3'" "HO3'" sing N N 297 U "C2'" "O2'" sing N N 298 U "C2'" "C1'" sing N N 299 U "C2'" "H2'" sing N N 300 U "O2'" "HO2'" sing N N 301 U "C1'" N1 sing N N 302 U "C1'" "H1'" sing N N 303 U N1 C2 sing N N 304 U N1 C6 sing N N 305 U C2 O2 doub N N 306 U C2 N3 sing N N 307 U N3 C4 sing N N 308 U N3 H3 sing N N 309 U C4 O4 doub N N 310 U C4 C5 sing N N 311 U C5 C6 doub N N 312 U C5 H5 sing N N 313 U C6 H6 sing N N 314 # _ndb_struct_conf_na.entry_id 8VAW _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A LCG 4 1_555 B C 13 1_555 -0.256 -0.151 0.011 -0.520 -12.633 1.027 1 A_LCG4:C13_B A 4 ? B 13 ? 19 1 1 A A 5 1_555 B U 12 1_555 0.027 -0.087 -0.037 4.054 -9.380 -4.558 2 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.149 -0.147 -0.074 9.592 -16.604 -1.383 3 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 -0.151 -0.057 -0.085 3.830 -15.017 2.253 4 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 0.012 -0.100 -0.084 5.247 -11.320 4.941 5 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 0.017 -0.034 0.126 -1.072 -15.626 7.074 6 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.023 -0.125 0.008 -1.916 -13.465 1.454 7 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.137 -0.133 -0.092 -8.868 -18.988 -0.069 8 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 0.018 -0.102 0.058 -5.175 -11.754 -4.293 9 A_U12:A5_B A 12 ? B 5 ? 20 1 1 A C 13 1_555 B LCG 4 1_555 0.298 -0.186 0.099 -0.721 -12.329 -0.018 10 A_C13:LCG4_B A 13 ? B 4 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A LCG 4 1_555 B C 13 1_555 A A 5 1_555 B U 12 1_555 -0.647 -1.258 3.163 -1.253 5.044 33.047 -2.972 0.928 2.965 8.799 2.186 33.442 1 AA_LCG4A5:U12C13_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.582 -1.605 3.137 0.778 1.878 32.434 -3.181 -0.912 3.055 3.358 -1.391 32.496 2 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.393 -1.860 3.343 -3.017 11.953 28.878 -5.516 0.205 2.428 22.707 5.731 31.347 3 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 -0.024 -1.051 3.231 -2.027 9.042 31.391 -3.346 -0.290 2.823 16.273 3.648 32.697 4 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 0.389 -1.453 3.223 0.044 18.731 31.060 -4.645 -0.621 2.048 31.632 -0.075 36.152 5 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 -0.643 -1.397 3.240 0.272 6.680 31.629 -3.631 1.202 2.887 12.086 -0.491 32.311 6 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.253 -1.564 3.383 2.390 9.667 32.014 -4.260 -0.058 2.816 17.020 -4.209 33.488 7 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 -0.578 -1.496 3.150 -1.963 3.012 32.858 -3.114 0.701 3.033 5.305 3.457 33.049 8 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? 1 A U 12 1_555 B A 5 1_555 A C 13 1_555 B LCG 4 1_555 0.791 -1.358 3.117 1.762 4.573 33.057 -3.068 -1.104 2.945 7.981 -3.076 33.408 9 AA_U12C13:LCG4A5_BB A 12 ? B 5 ? A 13 ? B 4 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'CHE 2104708' _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id G46 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id G46 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5L00 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8VAW _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.022952 _atom_sites.fract_transf_matrix[1][2] 0.013251 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026502 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011856 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 MG 12 12 5.4265 2.8275 2.1759 79.2611 1.2283 0.3808 2.3099 7.1937 0.8594 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 P 15 15 6.4348 1.9067 4.1793 27.1570 1.7801 0.5260 1.4909 68.1645 1.1150 S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 0.8669 # loop_