HEADER TRANSCRIPTION, TRANSFERASE/DNA 12-DEC-23 8VB7 TITLE KINETIC INTERMEDIATE STATES OF HIV-1 RT DNA SYNTHESIS CAPTURED BY TITLE 2 CRYO-EM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE/RIBONUCLEASE H P66 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 600-1154; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 600-1027; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (38-MER); COMPND 14 CHAIN: F; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: DNA A-TAMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG-POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 9 ORGANISM_TAXID: 11676; SOURCE 10 GENE: GAG-POL; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS REVERSE TRANSCRIPTION, TIME-RESOLVED, HIV-1, CRYO-EM, TRANSCRIPTION, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR S.VERGARA,X.ZHOU,U.SANTIAGO,J.F.CONWAY,N.SLUIS-CREMER,G.CALERO REVDAT 2 18-DEC-24 8VB7 1 JRNL REVDAT 1 11-DEC-24 8VB7 0 JRNL AUTH S.VERGARA,X.ZHOU,U.SANTIAGO,M.ALAOUI-EL-AZHER,J.F.CONWAY, JRNL AUTH 2 N.SLUIS-CREMER,G.CALERO JRNL TITL STRUCTURAL BASIS OF DEOXYNUCLEOTIDE ADDITION BY HIV-1 RT JRNL TITL 2 DURING REVERSE TRANSCRIPTION. JRNL REF NAT COMMUN V. 15 10553 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39632888 JRNL DOI 10.1038/S41467-024-54618-Y REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.500 REMARK 3 NUMBER OF PARTICLES : 402495 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8VB7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000278982. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : REVERSE REMARK 245 TRANSCRIPTASE/RIBONUCLEASE H IN REMARK 245 COMPLEX WITH DNA APTAMER REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.20 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 750.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2250.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 96000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 VAL A 0 REMARK 465 HIS A 539 REMARK 465 LYS A 540 REMARK 465 GLY A 541 REMARK 465 ILE A 542 REMARK 465 GLY A 543 REMARK 465 GLY A 544 REMARK 465 ASN A 545 REMARK 465 GLU A 546 REMARK 465 GLN A 547 REMARK 465 VAL A 548 REMARK 465 ASP A 549 REMARK 465 LYS A 550 REMARK 465 LEU A 551 REMARK 465 VAL A 552 REMARK 465 SER A 553 REMARK 465 ALA A 554 REMARK 465 GLY A 555 REMARK 465 MET B -15 REMARK 465 ALA B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 ALA B -7 REMARK 465 LEU B -6 REMARK 465 GLU B -5 REMARK 465 VAL B -4 REMARK 465 LEU B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 ILE B 5 REMARK 465 GLU B 6 REMARK 465 LEU B 214 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 GLY B 231 REMARK 465 TYR B 232 REMARK 465 GLN B 428 REMARK 465 DT F -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 ASN A 137 CG OD1 ND2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 MET A 357 CG SD CE REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ASP B 67 CG OD1 OD2 REMARK 470 GLN B 91 CG CD OE1 NE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 GLU B 248 CG CD OE1 OE2 REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 ARG B 284 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 315 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 357 CG SD CE REMARK 470 ARG B 358 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 427 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 -98.54 63.03 REMARK 500 GLU A 138 171.10 65.31 REMARK 500 THR A 139 75.32 52.29 REMARK 500 MET A 184 -115.74 54.16 REMARK 500 PRO A 392 49.37 -86.24 REMARK 500 ASP B 86 79.80 -34.19 REMARK 500 PHE B 87 -6.48 -147.51 REMARK 500 GLN B 91 -10.10 74.90 REMARK 500 ILE B 94 115.50 75.91 REMARK 500 PRO B 95 -57.88 -26.15 REMARK 500 LYS B 102 58.30 -96.74 REMARK 500 MET B 184 -124.25 56.50 REMARK 500 VAL B 276 19.65 46.98 REMARK 500 ARG B 358 -97.72 52.37 REMARK 500 ALA B 360 -4.11 68.57 REMARK 500 HIS B 361 -4.09 65.65 REMARK 500 THR B 362 24.10 49.50 REMARK 500 LEU B 422 -166.32 -76.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD2 REMARK 620 2 VAL A 111 O 97.2 REMARK 620 3 ASP A 185 OD2 89.3 82.3 REMARK 620 4 DTP A 602 O3G 97.7 99.5 172.4 REMARK 620 5 DTP A 602 O2B 173.5 87.2 96.1 76.8 REMARK 620 6 DTP A 602 O1A 100.7 155.7 81.7 94.1 76.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-43115 RELATED DB: EMDB REMARK 900 KINETIC INTERMEDIATE STATES OF HIV-1 RT DNA SYNTHESIS CAPTURED BY REMARK 900 CRYO-EM DBREF 8VB7 A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 8VB7 B 1 428 UNP P03366 POL_HV1B1 600 1027 DBREF 8VB7 F -4 33 PDB 8VB7 8VB7 -4 33 SEQADV 8VB7 MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8VB7 VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8VB7 SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8VB7 ASN A 498 UNP P03366 ASP 1097 ENGINEERED MUTATION SEQADV 8VB7 MET B -15 UNP P03366 EXPRESSION TAG SEQADV 8VB7 ALA B -14 UNP P03366 EXPRESSION TAG SEQADV 8VB7 HIS B -13 UNP P03366 EXPRESSION TAG SEQADV 8VB7 HIS B -12 UNP P03366 EXPRESSION TAG SEQADV 8VB7 HIS B -11 UNP P03366 EXPRESSION TAG SEQADV 8VB7 HIS B -10 UNP P03366 EXPRESSION TAG SEQADV 8VB7 HIS B -9 UNP P03366 EXPRESSION TAG SEQADV 8VB7 HIS B -8 UNP P03366 EXPRESSION TAG SEQADV 8VB7 ALA B -7 UNP P03366 EXPRESSION TAG SEQADV 8VB7 LEU B -6 UNP P03366 EXPRESSION TAG SEQADV 8VB7 GLU B -5 UNP P03366 EXPRESSION TAG SEQADV 8VB7 VAL B -4 UNP P03366 EXPRESSION TAG SEQADV 8VB7 LEU B -3 UNP P03366 EXPRESSION TAG SEQADV 8VB7 PHE B -2 UNP P03366 EXPRESSION TAG SEQADV 8VB7 GLN B -1 UNP P03366 EXPRESSION TAG SEQADV 8VB7 GLY B 0 UNP P03366 EXPRESSION TAG SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASN SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 444 MET ALA HIS HIS HIS HIS HIS HIS ALA LEU GLU VAL LEU SEQRES 2 B 444 PHE GLN GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 3 B 444 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 4 B 444 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 5 B 444 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 6 B 444 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 7 B 444 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 8 B 444 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 9 B 444 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 10 B 444 LYS LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 11 B 444 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 12 B 444 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 13 B 444 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 14 B 444 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 15 B 444 ILE LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL SEQRES 16 B 444 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 17 B 444 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 18 B 444 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 19 B 444 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 20 B 444 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 21 B 444 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 22 B 444 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 23 B 444 TYR PRO GLY ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU SEQRES 24 B 444 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 25 B 444 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 26 B 444 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 27 B 444 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 28 B 444 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 29 B 444 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 30 B 444 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 31 B 444 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 32 B 444 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 33 B 444 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 34 B 444 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 35 B 444 TYR GLN SEQRES 1 F 38 DT DA DA DT DT DC OMC DC OMC DC DC DC DT SEQRES 2 F 38 DT DC DG DG DT DG DC DT DT DT DG DC DA SEQRES 3 F 38 DC DC DG DA DA DG DG DG DG DG DG DG HET OMC F 2 21 HET OMC F 4 21 HET MG A 601 1 HET DTP A 602 30 HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE FORMUL 3 OMC 2(C10 H16 N3 O8 P) FORMUL 4 MG MG 2+ FORMUL 5 DTP C10 H16 N5 O12 P3 HELIX 1 AA1 LYS A 32 GLY A 45 1 14 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ALA A 114 VAL A 118 5 5 HELIX 5 AA5 ASP A 121 ALA A 129 5 9 HELIX 6 AA6 GLY A 155 ASN A 175 1 21 HELIX 7 AA7 GLU A 194 TRP A 212 1 19 HELIX 8 AA8 PRO A 217 HIS A 221 5 5 HELIX 9 AA9 VAL A 254 SER A 268 1 15 HELIX 10 AB1 VAL A 276 LYS A 281 1 6 HELIX 11 AB2 LEU A 282 ARG A 284 5 3 HELIX 12 AB3 THR A 296 GLU A 312 1 17 HELIX 13 AB4 ASN A 363 TRP A 383 1 21 HELIX 14 AB5 GLN A 394 TYR A 405 1 12 HELIX 15 AB6 THR A 473 SER A 489 1 17 HELIX 16 AB7 SER A 499 ALA A 508 1 10 HELIX 17 AB8 SER A 515 LYS A 528 1 14 HELIX 18 AB9 THR B 27 GLU B 44 1 18 HELIX 19 AC1 PHE B 77 ARG B 83 1 7 HELIX 20 AC2 GLY B 112 VAL B 118 5 7 HELIX 21 AC3 ASP B 121 ALA B 129 5 9 HELIX 22 AC4 SER B 134 GLU B 138 5 5 HELIX 23 AC5 LYS B 154 PHE B 160 1 7 HELIX 24 AC6 PHE B 160 LYS B 173 1 14 HELIX 25 AC7 GLU B 194 TRP B 212 1 19 HELIX 26 AC8 HIS B 235 TRP B 239 5 5 HELIX 27 AC9 VAL B 254 SER B 268 1 15 HELIX 28 AD1 CYS B 280 ARG B 284 5 5 HELIX 29 AD2 THR B 296 LYS B 311 1 16 HELIX 30 AD3 ASN B 363 GLY B 384 1 22 HELIX 31 AD4 GLN B 394 TRP B 402 1 9 HELIX 32 AD5 THR B 403 TYR B 405 5 3 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O SER A 191 N SER A 105 SHEET 3 AA3 3 VAL A 179 TYR A 183 -1 N TYR A 183 O ASP A 186 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 2 TRP A 252 THR A 253 0 SHEET 2 AA5 2 VAL A 292 ILE A 293 -1 O ILE A 293 N TRP A 252 SHEET 1 AA6 5 LYS A 347 TYR A 354 0 SHEET 2 AA6 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA6 5 ILE A 326 GLY A 333 -1 N GLN A 332 O GLN A 336 SHEET 4 AA6 5 LYS A 388 LEU A 391 1 O LYS A 390 N ILE A 329 SHEET 5 AA6 5 TRP A 414 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 AA7 2 HIS A 361 THR A 362 0 SHEET 2 AA7 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA8 5 GLN A 464 THR A 470 0 SHEET 2 AA8 5 LEU A 452 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA8 5 GLU A 438 ALA A 446 -1 N TYR A 441 O VAL A 458 SHEET 4 AA8 5 GLU A 492 THR A 497 1 O VAL A 496 N PHE A 440 SHEET 5 AA8 5 LYS A 530 TRP A 535 1 O ALA A 534 N THR A 497 SHEET 1 AA9 3 ILE B 47 LYS B 49 0 SHEET 2 AA9 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA9 3 PHE B 130 ILE B 132 -1 N PHE B 130 O TYR B 144 SHEET 1 AB1 2 VAL B 60 LYS B 64 0 SHEET 2 AB1 2 TRP B 71 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 AB2 3 SER B 105 ASP B 110 0 SHEET 2 AB2 3 ASP B 186 SER B 191 -1 O VAL B 189 N THR B 107 SHEET 3 AB2 3 VAL B 179 TYR B 183 -1 N VAL B 179 O GLY B 190 SHEET 1 AB3 2 TRP B 252 THR B 253 0 SHEET 2 AB3 2 VAL B 292 ILE B 293 -1 O ILE B 293 N TRP B 252 SHEET 1 AB4 5 LYS B 347 ALA B 355 0 SHEET 2 AB4 5 GLN B 336 GLU B 344 -1 N TYR B 339 O GLY B 352 SHEET 3 AB4 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB4 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 AB4 5 TRP B 414 PHE B 416 1 O GLU B 415 N PHE B 389 LINK O3' DC F 1 P OMC F 2 1555 1555 1.60 LINK O3' OMC F 2 P DC F 3 1555 1555 1.60 LINK O3' DC F 3 P OMC F 4 1555 1555 1.61 LINK O3' OMC F 4 P DC F 5 1555 1555 1.61 LINK OD2 ASP A 110 MG MG A 601 1555 1555 2.18 LINK O VAL A 111 MG MG A 601 1555 1555 2.19 LINK OD2 ASP A 185 MG MG A 601 1555 1555 2.42 LINK MG MG A 601 O3G DTP A 602 1555 1555 2.16 LINK MG MG A 601 O2B DTP A 602 1555 1555 2.52 LINK MG MG A 601 O1A DTP A 602 1555 1555 2.13 CISPEP 1 PRO A 225 PRO A 226 0 -1.32 CISPEP 2 PRO A 420 PRO A 421 0 1.23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 4377 ALA A 538 TER 7641 TYR B 427 HETATM 7743 N1 OMC F 2 153.143 156.351 137.551 1.00 87.67 N HETATM 7744 C2 OMC F 2 154.175 157.108 136.975 1.00 96.31 C HETATM 7745 N3 OMC F 2 153.913 158.380 136.626 1.00 91.82 N HETATM 7746 C4 OMC F 2 152.729 158.914 136.812 1.00 85.26 C HETATM 7747 C5 OMC F 2 151.655 158.182 137.392 1.00 88.66 C HETATM 7748 C6 OMC F 2 151.926 156.914 137.739 1.00 90.62 C HETATM 7749 O2 OMC F 2 155.269 156.599 136.811 1.00105.57 O HETATM 7750 N4 OMC F 2 152.542 160.176 136.442 1.00 88.66 N HETATM 7751 C1' OMC F 2 153.365 154.947 137.958 1.00 90.59 C HETATM 7752 C2' OMC F 2 153.834 154.835 139.411 1.00 91.79 C HETATM 7753 O2' OMC F 2 154.744 153.751 139.502 1.00 95.32 O HETATM 7754 CM2 OMC F 2 155.895 153.902 138.704 1.00 99.22 C HETATM 7755 C3' OMC F 2 152.529 154.499 140.120 1.00 89.11 C HETATM 7756 C4' OMC F 2 151.838 153.607 139.109 1.00 89.39 C HETATM 7757 O4' OMC F 2 152.149 154.237 137.844 1.00 95.49 O HETATM 7758 O3' OMC F 2 152.699 153.887 141.385 1.00 98.89 O HETATM 7759 C5' OMC F 2 150.347 153.458 139.261 1.00 95.93 C HETATM 7760 O5' OMC F 2 149.710 154.716 139.412 1.00106.24 O HETATM 7761 P OMC F 2 148.176 154.897 139.035 1.00106.54 P HETATM 7762 OP1 OMC F 2 147.363 153.937 139.892 1.00100.90 O HETATM 7763 OP2 OMC F 2 147.858 156.382 139.049 1.00101.56 O HETATM 7783 N1 OMC F 4 158.258 161.510 143.970 1.00 86.77 N HETATM 7784 C2 OMC F 4 158.071 162.812 143.474 1.00 97.48 C HETATM 7785 N3 OMC F 4 156.879 163.117 142.928 1.00 93.98 N HETATM 7786 C4 OMC F 4 155.910 162.235 142.853 1.00 90.42 C HETATM 7787 C5 OMC F 4 156.060 160.908 143.342 1.00 92.99 C HETATM 7788 C6 OMC F 4 157.251 160.610 143.884 1.00 90.39 C HETATM 7789 O2 OMC F 4 158.974 163.626 143.547 1.00104.62 O HETATM 7790 N4 OMC F 4 154.757 162.604 142.303 1.00 93.43 N HETATM 7791 C1' OMC F 4 159.532 161.073 144.583 1.00 90.88 C HETATM 7792 C2' OMC F 4 159.755 161.688 145.965 1.00 94.51 C HETATM 7793 O2' OMC F 4 161.150 161.876 146.147 1.00 99.32 O HETATM 7794 CM2 OMC F 4 161.708 162.843 145.291 1.00 99.20 C HETATM 7795 C3' OMC F 4 159.246 160.577 146.870 1.00 96.26 C HETATM 7796 C4' OMC F 4 159.699 159.330 146.133 1.00 95.88 C HETATM 7797 O4' OMC F 4 159.499 159.670 144.739 1.00100.19 O HETATM 7798 O3' OMC F 4 159.738 160.650 148.195 1.00103.24 O HETATM 7799 C5' OMC F 4 158.959 158.061 146.462 1.00 93.44 C HETATM 7800 O5' OMC F 4 157.566 158.200 146.238 1.00103.51 O HETATM 7801 P OMC F 4 156.646 156.922 146.025 1.00116.58 P HETATM 7802 OP1 OMC F 4 156.886 155.972 147.190 1.00107.87 O HETATM 7803 OP2 OMC F 4 155.237 157.410 145.732 1.00102.62 O TER 8403 DG F 33 HETATM 8404 MG MG A 601 161.854 156.145 125.109 1.00 82.97 MG HETATM 8405 PG DTP A 602 160.085 157.283 122.346 1.00108.70 P HETATM 8406 O1G DTP A 602 159.898 158.701 122.063 1.00103.31 O HETATM 8407 O2G DTP A 602 160.100 156.458 121.136 1.00103.31 O HETATM 8408 O3G DTP A 602 161.229 157.025 123.233 1.00103.32 O HETATM 8409 PB DTP A 602 158.429 155.987 124.419 1.00105.96 P HETATM 8410 O1B DTP A 602 157.140 155.361 124.159 1.00105.62 O HETATM 8411 O2B DTP A 602 159.578 155.139 124.730 1.00104.05 O HETATM 8412 O3B DTP A 602 158.797 156.879 123.159 1.00100.03 O HETATM 8413 PA DTP A 602 159.190 157.784 126.607 1.00108.06 P HETATM 8414 O1A DTP A 602 160.571 157.364 126.285 1.00105.76 O HETATM 8415 O2A DTP A 602 158.908 159.231 126.662 1.00106.08 O HETATM 8416 O3A DTP A 602 158.240 157.110 125.530 1.00100.05 O HETATM 8417 O5' DTP A 602 158.708 157.097 127.952 1.00 97.14 O HETATM 8418 C5' DTP A 602 158.889 155.692 128.173 1.00 96.93 C HETATM 8419 C4' DTP A 602 157.598 155.091 128.659 1.00 96.56 C HETATM 8420 O4' DTP A 602 157.109 155.864 129.764 1.00102.13 O HETATM 8421 C3' DTP A 602 156.465 155.139 127.655 1.00 96.56 C HETATM 8422 O3' DTP A 602 156.534 154.042 126.764 1.00108.75 O HETATM 8423 C2' DTP A 602 155.263 155.023 128.567 1.00 98.66 C HETATM 8424 C1' DTP A 602 155.690 155.819 129.780 1.00 98.52 C HETATM 8425 N9 DTP A 602 155.205 157.148 129.677 1.00 95.69 N HETATM 8426 C8 DTP A 602 155.914 158.261 129.414 1.00 95.37 C HETATM 8427 N7 DTP A 602 155.164 159.326 129.356 1.00 95.73 N HETATM 8428 C5 DTP A 602 153.883 158.864 129.600 1.00 93.91 C HETATM 8429 C6 DTP A 602 152.642 159.502 129.679 1.00 97.57 C HETATM 8430 N6 DTP A 602 152.470 160.802 129.502 1.00101.19 N HETATM 8431 N1 DTP A 602 151.570 158.731 129.945 1.00 97.21 N HETATM 8432 C2 DTP A 602 151.742 157.422 130.124 1.00 91.86 C HETATM 8433 N3 DTP A 602 152.858 156.717 130.073 1.00 94.57 N HETATM 8434 C4 DTP A 602 153.900 157.513 129.800 1.00 95.58 C CONECT 876 8404 CONECT 880 8404 CONECT 1480 8404 CONECT 7732 7761 CONECT 7743 7744 7748 7751 CONECT 7744 7743 7745 7749 CONECT 7745 7744 7746 CONECT 7746 7745 7747 7750 CONECT 7747 7746 7748 CONECT 7748 7743 7747 CONECT 7749 7744 CONECT 7750 7746 CONECT 7751 7743 7752 7757 CONECT 7752 7751 7753 7755 CONECT 7753 7752 7754 CONECT 7754 7753 CONECT 7755 7752 7756 7758 CONECT 7756 7755 7757 7759 CONECT 7757 7751 7756 CONECT 7758 7755 7764 CONECT 7759 7756 7760 CONECT 7760 7759 7761 CONECT 7761 7732 7760 7762 7763 CONECT 7762 7761 CONECT 7763 7761 CONECT 7764 7758 CONECT 7772 7801 CONECT 7783 7784 7788 7791 CONECT 7784 7783 7785 7789 CONECT 7785 7784 7786 CONECT 7786 7785 7787 7790 CONECT 7787 7786 7788 CONECT 7788 7783 7787 CONECT 7789 7784 CONECT 7790 7786 CONECT 7791 7783 7792 7797 CONECT 7792 7791 7793 7795 CONECT 7793 7792 7794 CONECT 7794 7793 CONECT 7795 7792 7796 7798 CONECT 7796 7795 7797 7799 CONECT 7797 7791 7796 CONECT 7798 7795 7804 CONECT 7799 7796 7800 CONECT 7800 7799 7801 CONECT 7801 7772 7800 7802 7803 CONECT 7802 7801 CONECT 7803 7801 CONECT 7804 7798 CONECT 8404 876 880 1480 8408 CONECT 8404 8411 8414 CONECT 8405 8406 8407 8408 8412 CONECT 8406 8405 CONECT 8407 8405 CONECT 8408 8404 8405 CONECT 8409 8410 8411 8412 8416 CONECT 8410 8409 CONECT 8411 8404 8409 CONECT 8412 8405 8409 CONECT 8413 8414 8415 8416 8417 CONECT 8414 8404 8413 CONECT 8415 8413 CONECT 8416 8409 8413 CONECT 8417 8413 8418 CONECT 8418 8417 8419 CONECT 8419 8418 8420 8421 CONECT 8420 8419 8424 CONECT 8421 8419 8422 8423 CONECT 8422 8421 CONECT 8423 8421 8424 CONECT 8424 8420 8423 8425 CONECT 8425 8424 8426 8434 CONECT 8426 8425 8427 CONECT 8427 8426 8428 CONECT 8428 8427 8429 8434 CONECT 8429 8428 8430 8431 CONECT 8430 8429 CONECT 8431 8429 8432 CONECT 8432 8431 8433 CONECT 8433 8432 8434 CONECT 8434 8425 8428 8433 MASTER 245 0 4 32 40 0 0 6 8424 3 81 81 END