HEADER TRANSCRIPTION, TRANSFERASE/DNA 12-DEC-23 8VBE TITLE KINETIC INTERMEDIATE STATES OF HIV-1 RT DNA SYNTHESIS CAPTURED BY TITLE 2 CRYO-EM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE/RIBONUCLEASE H P66 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 600-1154; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 600-1027; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (39-MER); COMPND 14 CHAIN: F; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: DNA A-TAMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG-POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 9 ORGANISM_TAXID: 11676; SOURCE 10 GENE: GAG-POL; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS REVERSE TRANSCRIPTION, TIME-RESOLVED, HIV-1, CRYO-EM, TRANSCRIPTION, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR S.VERGARA,X.ZHOU,U.SANTIAGO,J.F.CONWAY,N.SLUIS-CREMER,G.CALERO REVDAT 2 18-DEC-24 8VBE 1 JRNL REVDAT 1 11-DEC-24 8VBE 0 JRNL AUTH S.VERGARA,X.ZHOU,U.SANTIAGO,M.ALAOUI-EL-AZHER,J.F.CONWAY, JRNL AUTH 2 N.SLUIS-CREMER,G.CALERO JRNL TITL STRUCTURAL BASIS OF DEOXYNUCLEOTIDE ADDITION BY HIV-1 RT JRNL TITL 2 DURING REVERSE TRANSCRIPTION. JRNL REF NAT COMMUN V. 15 10553 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39632888 JRNL DOI 10.1038/S41467-024-54618-Y REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.600 REMARK 3 NUMBER OF PARTICLES : 122654 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8VBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279161. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : REVERSE REMARK 245 TRANSCRIPTASE/RIBONUCLEASE H IN REMARK 245 COMPLEX WITH DNA APTAMER REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.20 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 750.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2250.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 96000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 VAL A 0 REMARK 465 HIS A 539 REMARK 465 LYS A 540 REMARK 465 GLY A 541 REMARK 465 ILE A 542 REMARK 465 GLY A 543 REMARK 465 GLY A 544 REMARK 465 ASN A 545 REMARK 465 GLU A 546 REMARK 465 GLN A 547 REMARK 465 VAL A 548 REMARK 465 ASP A 549 REMARK 465 LYS A 550 REMARK 465 LEU A 551 REMARK 465 VAL A 552 REMARK 465 SER A 553 REMARK 465 ALA A 554 REMARK 465 GLY A 555 REMARK 465 MET B -15 REMARK 465 ALA B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 ALA B -7 REMARK 465 LEU B -6 REMARK 465 GLU B -5 REMARK 465 VAL B -4 REMARK 465 LEU B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 ILE B 5 REMARK 465 GLU B 6 REMARK 465 PHE B 87 REMARK 465 TRP B 88 REMARK 465 GLU B 89 REMARK 465 VAL B 90 REMARK 465 GLN B 91 REMARK 465 LEU B 92 REMARK 465 GLY B 93 REMARK 465 ILE B 94 REMARK 465 PRO B 95 REMARK 465 LEU B 214 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 GLY B 231 REMARK 465 TYR B 232 REMARK 465 GLN B 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 GLN B 85 CG CD OE1 NE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 ARG B 199 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 212 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 212 CZ3 CH2 REMARK 470 MET B 357 CG SD CE REMARK 470 ARG B 358 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 422 CG CD1 CD2 REMARK 470 VAL B 423 CG1 CG2 REMARK 470 LYS B 424 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 66 -122.72 30.27 REMARK 500 PHE A 77 33.73 -95.56 REMARK 500 ASN A 136 -81.21 59.31 REMARK 500 GLU A 138 -86.10 -174.10 REMARK 500 MET A 184 -109.52 56.63 REMARK 500 ALA A 355 25.31 -140.45 REMARK 500 PRO A 392 49.22 -87.43 REMARK 500 PRO A 412 -179.36 -64.40 REMARK 500 VAL B 8 74.15 53.60 REMARK 500 VAL B 10 133.95 53.87 REMARK 500 LYS B 11 143.95 76.76 REMARK 500 PHE B 77 52.07 -92.68 REMARK 500 ALA B 98 49.87 -91.66 REMARK 500 PRO B 176 48.08 -78.53 REMARK 500 MET B 184 -116.15 53.57 REMARK 500 TRP B 212 59.06 -94.05 REMARK 500 LYS B 238 31.95 -98.62 REMARK 500 VAL B 276 59.77 37.75 REMARK 500 PHE B 346 -1.58 70.09 REMARK 500 ALA B 360 109.12 -57.52 REMARK 500 TRP B 383 -76.55 49.62 REMARK 500 LEU B 422 -166.95 -169.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD1 REMARK 620 2 VAL A 111 O 83.8 REMARK 620 3 ASP A 185 OD2 80.9 81.5 REMARK 620 4 DTP A 601 O1G 99.7 99.1 179.2 REMARK 620 5 DTP A 601 O2B 172.7 93.7 105.7 73.8 REMARK 620 6 DTP A 601 O1A 106.2 164.5 88.3 91.0 77.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD2 REMARK 620 2 DA F 34 O3' 101.8 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-43122 RELATED DB: EMDB REMARK 900 KINETIC INTERMEDIATE STATES OF HIV-1 RT DNA SYNTHESIS CAPTURED BY REMARK 900 CRYO-EM DBREF 8VBE A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 8VBE B 1 428 UNP P03366 POL_HV1B1 600 1027 DBREF 8VBE F -4 34 PDB 8VBE 8VBE -4 34 SEQADV 8VBE MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8VBE VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8VBE CYS A 258 UNP P03366 GLN 857 CONFLICT SEQADV 8VBE SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8VBE ASN A 498 UNP P03366 ASP 1097 ENGINEERED MUTATION SEQADV 8VBE MET B -15 UNP P03366 EXPRESSION TAG SEQADV 8VBE ALA B -14 UNP P03366 EXPRESSION TAG SEQADV 8VBE HIS B -13 UNP P03366 EXPRESSION TAG SEQADV 8VBE HIS B -12 UNP P03366 EXPRESSION TAG SEQADV 8VBE HIS B -11 UNP P03366 EXPRESSION TAG SEQADV 8VBE HIS B -10 UNP P03366 EXPRESSION TAG SEQADV 8VBE HIS B -9 UNP P03366 EXPRESSION TAG SEQADV 8VBE HIS B -8 UNP P03366 EXPRESSION TAG SEQADV 8VBE ALA B -7 UNP P03366 EXPRESSION TAG SEQADV 8VBE LEU B -6 UNP P03366 EXPRESSION TAG SEQADV 8VBE GLU B -5 UNP P03366 EXPRESSION TAG SEQADV 8VBE VAL B -4 UNP P03366 EXPRESSION TAG SEQADV 8VBE LEU B -3 UNP P03366 EXPRESSION TAG SEQADV 8VBE PHE B -2 UNP P03366 EXPRESSION TAG SEQADV 8VBE GLN B -1 UNP P03366 EXPRESSION TAG SEQADV 8VBE GLY B 0 UNP P03366 EXPRESSION TAG SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE CYS SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASN SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 444 MET ALA HIS HIS HIS HIS HIS HIS ALA LEU GLU VAL LEU SEQRES 2 B 444 PHE GLN GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 3 B 444 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 4 B 444 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 5 B 444 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 6 B 444 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 7 B 444 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 8 B 444 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 9 B 444 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 10 B 444 LYS LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 11 B 444 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 12 B 444 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 13 B 444 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 14 B 444 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 15 B 444 ILE LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL SEQRES 16 B 444 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 17 B 444 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 18 B 444 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 19 B 444 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 20 B 444 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 21 B 444 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 22 B 444 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 23 B 444 TYR PRO GLY ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU SEQRES 24 B 444 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 25 B 444 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 26 B 444 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 27 B 444 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 28 B 444 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 29 B 444 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 30 B 444 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 31 B 444 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 32 B 444 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 33 B 444 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 34 B 444 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 35 B 444 TYR GLN SEQRES 1 F 39 DT DA DA DT DT DC OMC DC OMC DC DC DC DT SEQRES 2 F 39 DT DC DG DG DT DG DC DT DT DT DG DC DA SEQRES 3 F 39 DC DC DG DA DA DG DG DG DG DG DG DG DA HET OMC F 2 21 HET OMC F 4 21 HET DTP A 601 30 HET MG A 602 1 HET MG A 603 1 HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 OMC 2(C10 H16 N3 O8 P) FORMUL 4 DTP C10 H16 N5 O12 P3 FORMUL 5 MG 2(MG 2+) HELIX 1 AA1 THR A 27 GLY A 45 1 19 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ALA A 114 VAL A 118 5 5 HELIX 5 AA5 ASP A 121 ALA A 129 5 9 HELIX 6 AA6 GLY A 155 ASN A 175 1 21 HELIX 7 AA7 GLU A 194 TRP A 212 1 19 HELIX 8 AA8 PRO A 217 HIS A 221 5 5 HELIX 9 AA9 THR A 253 SER A 268 1 16 HELIX 10 AB1 VAL A 276 LYS A 281 1 6 HELIX 11 AB2 LEU A 282 ARG A 284 5 3 HELIX 12 AB3 THR A 296 LEU A 310 1 15 HELIX 13 AB4 ASN A 363 GLY A 384 1 22 HELIX 14 AB5 GLN A 394 TYR A 405 1 12 HELIX 15 AB6 THR A 473 ASP A 488 1 16 HELIX 16 AB7 SER A 499 GLN A 507 1 9 HELIX 17 AB8 SER A 515 LYS A 528 1 14 HELIX 18 AB9 THR B 27 GLU B 44 1 18 HELIX 19 AC1 PHE B 77 ARG B 83 1 7 HELIX 20 AC2 GLY B 112 VAL B 118 5 7 HELIX 21 AC3 PHE B 124 TYR B 127 5 4 HELIX 22 AC4 SER B 134 GLU B 138 5 5 HELIX 23 AC5 SER B 156 THR B 165 1 10 HELIX 24 AC6 LEU B 168 LYS B 173 1 6 HELIX 25 AC7 GLN B 197 TRP B 212 1 16 HELIX 26 AC8 HIS B 235 TRP B 239 5 5 HELIX 27 AC9 THR B 253 TYR B 271 1 19 HELIX 28 AD1 CYS B 280 ARG B 284 5 5 HELIX 29 AD2 THR B 296 ILE B 309 1 14 HELIX 30 AD3 ASN B 363 ILE B 382 1 20 HELIX 31 AD4 GLN B 394 TRP B 402 1 9 HELIX 32 AD5 THR B 403 TYR B 405 5 3 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N PHE A 130 O TYR A 144 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O ARG A 72 N ILE A 63 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA3 3 VAL A 179 TYR A 183 -1 N TYR A 183 O ASP A 186 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O TYR A 232 N TRP A 229 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 TYR A 354 0 SHEET 2 AA5 5 TRP A 337 GLU A 344 -1 N ILE A 341 O LYS A 350 SHEET 3 AA5 5 ILE A 326 LYS A 331 -1 N GLN A 330 O THR A 338 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 N LYS A 512 O THR A 362 SHEET 1 AA7 3 TYR A 441 ASN A 447 0 SHEET 2 AA7 3 LEU A 452 VAL A 458 -1 O LEU A 452 N ASN A 447 SHEET 3 AA7 3 GLN A 464 THR A 470 -1 O LEU A 469 N GLY A 453 SHEET 1 AA8 2 GLU A 492 THR A 497 0 SHEET 2 AA8 2 LYS A 530 TRP A 535 1 O ALA A 534 N THR A 497 SHEET 1 AA9 3 ILE B 47 LYS B 49 0 SHEET 2 AA9 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA9 3 ALA B 129 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AB1 2 VAL B 60 LYS B 64 0 SHEET 2 AB1 2 TRP B 71 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 AB2 3 SER B 105 ASP B 110 0 SHEET 2 AB2 3 ASP B 186 SER B 191 -1 O VAL B 189 N THR B 107 SHEET 3 AB2 3 VAL B 179 TYR B 183 -1 N TYR B 181 O TYR B 188 SHEET 1 AB3 5 LYS B 347 ALA B 355 0 SHEET 2 AB3 5 GLN B 336 GLU B 344 -1 N ILE B 341 O LYS B 350 SHEET 3 AB3 5 ILE B 326 LYS B 331 -1 N GLN B 330 O THR B 338 SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 AB3 5 TRP B 414 PHE B 416 1 O GLU B 415 N PHE B 389 LINK O3' DC F 1 P OMC F 2 1555 1555 1.61 LINK O3' OMC F 2 P DC F 3 1555 1555 1.61 LINK O3' DC F 3 P OMC F 4 1555 1555 1.61 LINK O3' OMC F 4 P DC F 5 1555 1555 1.61 LINK OD1 ASP A 110 MG MG A 602 1555 1555 2.30 LINK OD2 ASP A 110 MG MG A 603 1555 1555 2.38 LINK O VAL A 111 MG MG A 602 1555 1555 2.05 LINK OD2 ASP A 185 MG MG A 602 1555 1555 2.29 LINK O1G DTP A 601 MG MG A 602 1555 1555 2.37 LINK O2B DTP A 601 MG MG A 602 1555 1555 2.53 LINK O1A DTP A 601 MG MG A 602 1555 1555 2.13 LINK MG MG A 603 O3' DA F 34 1555 1555 2.71 CISPEP 1 PRO A 225 PRO A 226 0 -1.44 CISPEP 2 PRO A 420 PRO A 421 0 -1.40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 4385 ALA A 538 TER 7589 TYR B 427 HETATM 7711 N1 OMC F 2 156.883 157.842 140.673 1.00 54.40 N HETATM 7712 C2 OMC F 2 157.313 159.157 140.401 1.00 63.65 C HETATM 7713 N3 OMC F 2 156.405 160.037 139.934 1.00 62.66 N HETATM 7714 C4 OMC F 2 155.155 159.694 139.727 1.00 59.70 C HETATM 7715 C5 OMC F 2 154.682 158.378 139.992 1.00 63.78 C HETATM 7716 C6 OMC F 2 155.590 157.502 140.455 1.00 63.05 C HETATM 7717 O2 OMC F 2 158.473 159.481 140.592 1.00 67.12 O HETATM 7718 N4 OMC F 2 154.314 160.615 139.263 1.00 62.34 N HETATM 7719 C1' OMC F 2 157.791 156.792 141.187 1.00 58.40 C HETATM 7720 C2' OMC F 2 158.274 157.088 142.610 1.00 65.65 C HETATM 7721 O2' OMC F 2 159.607 156.618 142.732 1.00 81.85 O HETATM 7722 CM2 OMC F 2 160.526 157.317 141.927 1.00 70.39 C HETATM 7723 C3' OMC F 2 157.324 156.233 143.437 1.00 60.40 C HETATM 7724 C4' OMC F 2 157.135 155.013 142.555 1.00 59.47 C HETATM 7725 O4' OMC F 2 157.092 155.565 141.217 1.00 63.00 O HETATM 7726 O3' OMC F 2 157.818 155.917 144.727 1.00 71.62 O HETATM 7727 C5' OMC F 2 155.902 154.186 142.814 1.00 66.10 C HETATM 7728 O5' OMC F 2 154.715 154.953 142.682 1.00 73.88 O HETATM 7729 P OMC F 2 153.288 154.250 142.682 1.00 73.54 P HETATM 7730 OP1 OMC F 2 153.241 153.297 143.870 1.00 70.22 O HETATM 7731 OP2 OMC F 2 152.226 155.330 142.553 1.00 66.12 O HETATM 7751 N1 OMC F 4 158.217 165.357 146.227 1.00 63.08 N HETATM 7752 C2 OMC F 4 157.259 166.264 145.725 1.00 70.89 C HETATM 7753 N3 OMC F 4 156.062 165.777 145.340 1.00 73.29 N HETATM 7754 C4 OMC F 4 155.778 164.497 145.414 1.00 66.07 C HETATM 7755 C5 OMC F 4 156.717 163.548 145.908 1.00 68.06 C HETATM 7756 C6 OMC F 4 157.910 164.038 146.288 1.00 68.93 C HETATM 7757 O2 OMC F 4 157.507 167.455 145.650 1.00 78.69 O HETATM 7758 N4 OMC F 4 154.575 164.088 145.016 1.00 65.00 N HETATM 7759 C1' OMC F 4 159.579 165.745 146.667 1.00 65.78 C HETATM 7760 C2' OMC F 4 159.582 166.732 147.841 1.00 68.61 C HETATM 7761 O2' OMC F 4 160.611 167.685 147.618 1.00 77.40 O HETATM 7762 CM2 OMC F 4 160.379 168.545 146.526 1.00 74.86 C HETATM 7763 C3' OMC F 4 159.940 165.829 149.017 1.00 69.88 C HETATM 7764 C4' OMC F 4 160.844 164.788 148.381 1.00 67.71 C HETATM 7765 O4' OMC F 4 160.266 164.583 147.073 1.00 75.15 O HETATM 7766 O3' OMC F 4 160.570 166.521 150.082 1.00 84.22 O HETATM 7767 C5' OMC F 4 160.947 163.467 149.103 1.00 69.13 C HETATM 7768 O5' OMC F 4 159.760 162.702 148.956 1.00 72.60 O HETATM 7769 P OMC F 4 159.767 161.125 149.181 1.00 84.44 P HETATM 7770 OP1 OMC F 4 160.578 160.834 150.438 1.00 74.24 O HETATM 7771 OP2 OMC F 4 158.329 160.637 149.089 1.00 73.34 O TER 8392 DA F 34 HETATM 8393 PG DTP A 601 160.905 156.573 122.033 1.00 85.30 P HETATM 8394 O1G DTP A 601 162.036 156.347 122.995 1.00 76.66 O HETATM 8395 O2G DTP A 601 160.675 158.027 121.752 1.00 73.29 O HETATM 8396 O3G DTP A 601 161.041 155.762 120.781 1.00 73.82 O HETATM 8397 PB DTP A 601 159.231 155.271 124.113 1.00 77.93 P HETATM 8398 O1B DTP A 601 157.881 154.668 123.985 1.00 80.98 O HETATM 8399 O2B DTP A 601 160.385 154.403 124.470 1.00 68.84 O HETATM 8400 O3B DTP A 601 159.564 156.050 122.757 1.00 75.80 O HETATM 8401 PA DTP A 601 160.048 157.082 126.319 1.00 84.06 P HETATM 8402 O1A DTP A 601 161.439 156.579 126.143 1.00 81.69 O HETATM 8403 O2A DTP A 601 159.850 158.556 126.365 1.00 74.89 O HETATM 8404 O3A DTP A 601 159.125 156.486 125.151 1.00 65.23 O HETATM 8405 O5' DTP A 601 159.399 156.419 127.624 1.00 71.78 O HETATM 8406 C5' DTP A 601 159.695 155.046 127.969 1.00 64.65 C HETATM 8407 C4' DTP A 601 158.437 154.372 128.456 1.00 66.49 C HETATM 8408 O4' DTP A 601 157.904 155.108 129.575 1.00 73.90 O HETATM 8409 C3' DTP A 601 157.300 154.324 127.445 1.00 68.69 C HETATM 8410 O3' DTP A 601 157.423 153.193 126.592 1.00 78.31 O HETATM 8411 C2' DTP A 601 156.087 154.199 128.355 1.00 68.00 C HETATM 8412 C1' DTP A 601 156.482 155.022 129.570 1.00 69.77 C HETATM 8413 N9 DTP A 601 155.942 156.361 129.491 1.00 67.75 N HETATM 8414 C8 DTP A 601 156.609 157.526 129.218 1.00 66.88 C HETATM 8415 N7 DTP A 601 155.812 158.566 129.199 1.00 65.10 N HETATM 8416 C5 DTP A 601 154.550 158.049 129.467 1.00 67.42 C HETATM 8417 C6 DTP A 601 153.280 158.640 129.579 1.00 70.84 C HETATM 8418 N6 DTP A 601 153.049 159.939 129.428 1.00 76.62 N HETATM 8419 N1 DTP A 601 152.238 157.823 129.851 1.00 64.94 N HETATM 8420 C2 DTP A 601 152.466 156.514 130.002 1.00 61.28 C HETATM 8421 N3 DTP A 601 153.612 155.850 129.917 1.00 67.70 N HETATM 8422 C4 DTP A 601 154.624 156.688 129.643 1.00 66.44 C HETATM 8423 MG MG A 602 162.693 155.286 125.010 1.00 41.12 MG HETATM 8424 MG MG A 603 163.820 159.119 127.318 1.00 77.40 MG CONECT 883 8423 CONECT 884 8424 CONECT 888 8423 CONECT 1491 8423 CONECT 7700 7729 CONECT 7711 7712 7716 7719 CONECT 7712 7711 7713 7717 CONECT 7713 7712 7714 CONECT 7714 7713 7715 7718 CONECT 7715 7714 7716 CONECT 7716 7711 7715 CONECT 7717 7712 CONECT 7718 7714 CONECT 7719 7711 7720 7725 CONECT 7720 7719 7721 7723 CONECT 7721 7720 7722 CONECT 7722 7721 CONECT 7723 7720 7724 7726 CONECT 7724 7723 7725 7727 CONECT 7725 7719 7724 CONECT 7726 7723 7732 CONECT 7727 7724 7728 CONECT 7728 7727 7729 CONECT 7729 7700 7728 7730 7731 CONECT 7730 7729 CONECT 7731 7729 CONECT 7732 7726 CONECT 7740 7769 CONECT 7751 7752 7756 7759 CONECT 7752 7751 7753 7757 CONECT 7753 7752 7754 CONECT 7754 7753 7755 7758 CONECT 7755 7754 7756 CONECT 7756 7751 7755 CONECT 7757 7752 CONECT 7758 7754 CONECT 7759 7751 7760 7765 CONECT 7760 7759 7761 7763 CONECT 7761 7760 7762 CONECT 7762 7761 CONECT 7763 7760 7764 7766 CONECT 7764 7763 7765 7767 CONECT 7765 7759 7764 CONECT 7766 7763 7772 CONECT 7767 7764 7768 CONECT 7768 7767 7769 CONECT 7769 7740 7768 7770 7771 CONECT 7770 7769 CONECT 7771 7769 CONECT 7772 7766 CONECT 8379 8424 CONECT 8393 8394 8395 8396 8400 CONECT 8394 8393 8423 CONECT 8395 8393 CONECT 8396 8393 CONECT 8397 8398 8399 8400 8404 CONECT 8398 8397 CONECT 8399 8397 8423 CONECT 8400 8393 8397 CONECT 8401 8402 8403 8404 8405 CONECT 8402 8401 8423 CONECT 8403 8401 CONECT 8404 8397 8401 CONECT 8405 8401 8406 CONECT 8406 8405 8407 CONECT 8407 8406 8408 8409 CONECT 8408 8407 8412 CONECT 8409 8407 8410 8411 CONECT 8410 8409 CONECT 8411 8409 8412 CONECT 8412 8408 8411 8413 CONECT 8413 8412 8414 8422 CONECT 8414 8413 8415 CONECT 8415 8414 8416 CONECT 8416 8415 8417 8422 CONECT 8417 8416 8418 8419 CONECT 8418 8417 CONECT 8419 8417 8420 CONECT 8420 8419 8421 CONECT 8421 8420 8422 CONECT 8422 8413 8416 8421 CONECT 8423 883 888 1491 8394 CONECT 8423 8399 8402 CONECT 8424 884 8379 MASTER 256 0 5 32 36 0 0 6 8421 3 84 81 END