HEADER TRANSCRIPTION, TRANSFERASE/DNA 12-DEC-23 8VBI TITLE KINETIC INTERMEDIATE STATES OF HIV-1 RT DNA SYNTHESIS CAPTURED BY TITLE 2 CRYO-EM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE/RIBONUCLEASE H P66 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 600-1154; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 600-1027; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (38-MER); COMPND 14 CHAIN: F; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: DNA APTAMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG-POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 9 ORGANISM_TAXID: 11676; SOURCE 10 GENE: GAG-POL; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS REVERSE TRANSCRIPTION, TIME-RESOLVED, HIV-1, CRYO-EM, TRANSCRIPTION, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR S.VERGARA,X.ZHOU,U.SANTIAGO,J.F.CONWAY,N.SLUIS-CREMER,G.CALERO REVDAT 2 18-DEC-24 8VBI 1 JRNL REVDAT 1 11-DEC-24 8VBI 0 JRNL AUTH S.VERGARA,X.ZHOU,U.SANTIAGO,M.ALAOUI-EL-AZHER,J.F.CONWAY, JRNL AUTH 2 N.SLUIS-CREMER,G.CALERO JRNL TITL STRUCTURAL BASIS OF DEOXYNUCLEOTIDE ADDITION BY HIV-1 RT JRNL TITL 2 DURING REVERSE TRANSCRIPTION. JRNL REF NAT COMMUN V. 15 10553 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39632888 JRNL DOI 10.1038/S41467-024-54618-Y REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.300 REMARK 3 NUMBER OF PARTICLES : 115257 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8VBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279122. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : REVERSE REMARK 245 TRANSCRIPTASE/RIBONUCLEASE H IN REMARK 245 COMPLEX WITH DNA APTAMER REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.20 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 750.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2250.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5600.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 165000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 VAL A 0 REMARK 465 PRO A 1 REMARK 465 ALA A 554 REMARK 465 GLY A 555 REMARK 465 MET B -15 REMARK 465 ALA B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 ALA B -7 REMARK 465 LEU B -6 REMARK 465 GLU B -5 REMARK 465 VAL B -4 REMARK 465 LEU B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 ILE B 5 REMARK 465 GLU B 6 REMARK 465 THR B 7 REMARK 465 PHE B 87 REMARK 465 TRP B 88 REMARK 465 GLU B 89 REMARK 465 VAL B 90 REMARK 465 GLN B 91 REMARK 465 LEU B 92 REMARK 465 GLY B 93 REMARK 465 ILE B 94 REMARK 465 PRO B 95 REMARK 465 LEU B 214 REMARK 465 THR B 215 REMARK 465 THR B 216 REMARK 465 PRO B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 GLY B 231 REMARK 465 TYR B 232 REMARK 465 GLN B 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS A 550 CG CD CE NZ REMARK 470 TRP B 212 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 212 CZ3 CH2 REMARK 470 HIS B 315 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 357 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 68 -178.60 -69.21 REMARK 500 ASN A 136 -102.96 60.39 REMARK 500 GLU A 138 -87.59 81.13 REMARK 500 MET A 184 -110.34 56.77 REMARK 500 GLU A 297 -9.67 72.22 REMARK 500 PRO A 392 46.85 -84.57 REMARK 500 PRO A 412 -179.74 -63.55 REMARK 500 ASP A 488 32.27 -95.56 REMARK 500 ALA A 538 -71.82 -63.46 REMARK 500 MET B 184 -100.96 56.92 REMARK 500 VAL B 276 -61.09 -123.29 REMARK 500 ARG B 277 -79.22 24.38 REMARK 500 ARG B 358 -97.05 54.07 REMARK 500 ALA B 360 -118.21 58.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD1 REMARK 620 2 VAL A 111 O 87.0 REMARK 620 3 ASP A 185 OD2 92.2 87.6 REMARK 620 4 DTP A 701 O2G 91.6 97.5 173.8 REMARK 620 5 DTP A 701 O2B 172.1 91.6 95.5 80.9 REMARK 620 6 DTP A 701 O2A 101.3 171.3 89.3 85.1 80.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD2 REMARK 620 2 ASP A 185 OD1 102.7 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-43126 RELATED DB: EMDB REMARK 900 KINETIC INTERMEDIATE STATES OF HIV-1 RT DNA SYNTHESIS CAPTURED BY REMARK 900 CRYO-EM DBREF 8VBI A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 8VBI B 1 428 UNP P03366 POL_HV1B1 600 1027 DBREF 8VBI F -4 33 PDB 8VBI 8VBI -4 33 SEQADV 8VBI MET A -1 UNP P03366 EXPRESSION TAG SEQADV 8VBI VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 8VBI SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 8VBI ASN A 498 UNP P03366 ASP 1097 ENGINEERED MUTATION SEQADV 8VBI MET B -15 UNP P03366 EXPRESSION TAG SEQADV 8VBI ALA B -14 UNP P03366 EXPRESSION TAG SEQADV 8VBI HIS B -13 UNP P03366 EXPRESSION TAG SEQADV 8VBI HIS B -12 UNP P03366 EXPRESSION TAG SEQADV 8VBI HIS B -11 UNP P03366 EXPRESSION TAG SEQADV 8VBI HIS B -10 UNP P03366 EXPRESSION TAG SEQADV 8VBI HIS B -9 UNP P03366 EXPRESSION TAG SEQADV 8VBI HIS B -8 UNP P03366 EXPRESSION TAG SEQADV 8VBI ALA B -7 UNP P03366 EXPRESSION TAG SEQADV 8VBI LEU B -6 UNP P03366 EXPRESSION TAG SEQADV 8VBI GLU B -5 UNP P03366 EXPRESSION TAG SEQADV 8VBI VAL B -4 UNP P03366 EXPRESSION TAG SEQADV 8VBI LEU B -3 UNP P03366 EXPRESSION TAG SEQADV 8VBI PHE B -2 UNP P03366 EXPRESSION TAG SEQADV 8VBI GLN B -1 UNP P03366 EXPRESSION TAG SEQADV 8VBI GLY B 0 UNP P03366 EXPRESSION TAG SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASN SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 444 MET ALA HIS HIS HIS HIS HIS HIS ALA LEU GLU VAL LEU SEQRES 2 B 444 PHE GLN GLY PRO ILE SER PRO ILE GLU THR VAL PRO VAL SEQRES 3 B 444 LYS LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN SEQRES 4 B 444 TRP PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU SEQRES 5 B 444 ILE CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS SEQRES 6 B 444 ILE GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA SEQRES 7 B 444 ILE LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL SEQRES 8 B 444 ASP PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP SEQRES 9 B 444 GLU VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS SEQRES 10 B 444 LYS LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA SEQRES 11 B 444 TYR PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR SEQRES 12 B 444 THR ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO SEQRES 13 B 444 GLY ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP SEQRES 14 B 444 LYS GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS SEQRES 15 B 444 ILE LEU GLU PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL SEQRES 16 B 444 ILE TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP SEQRES 17 B 444 LEU GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU SEQRES 18 B 444 ARG GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP SEQRES 19 B 444 LYS LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY SEQRES 20 B 444 TYR GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE SEQRES 21 B 444 VAL LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE SEQRES 22 B 444 GLN LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE SEQRES 23 B 444 TYR PRO GLY ILE LYS VAL ARG GLN LEU CYS LYS LEU LEU SEQRES 24 B 444 ARG GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR SEQRES 25 B 444 GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE SEQRES 26 B 444 LEU LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER SEQRES 27 B 444 LYS ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY SEQRES 28 B 444 GLN TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN SEQRES 29 B 444 LEU LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS SEQRES 30 B 444 THR ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS SEQRES 31 B 444 ILE THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO SEQRES 32 B 444 LYS PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR SEQRES 33 B 444 TRP TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU SEQRES 34 B 444 TRP GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP SEQRES 35 B 444 TYR GLN SEQRES 1 F 38 DT DA DA DT DT DG OMC DC OMC DC DC DC DT SEQRES 2 F 38 DT DC DG DG DT DG DC DT DT DT DG DC DA SEQRES 3 F 38 DC DC DG DA DA DG DG DG DG DG DG DOC HET OMC F 2 21 HET OMC F 4 21 HET DOC F 33 18 HET DTP A 701 30 HET MG A 702 1 HET MG A 703 1 HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 OMC 2(C10 H16 N3 O8 P) FORMUL 3 DOC C9 H14 N3 O6 P FORMUL 4 DTP C10 H16 N5 O12 P3 FORMUL 5 MG 2(MG 2+) HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 THR A 84 1 8 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ALA A 114 VAL A 118 5 5 HELIX 5 AA5 ASP A 121 LYS A 126 1 6 HELIX 6 AA6 TYR A 127 ALA A 129 5 3 HELIX 7 AA7 GLY A 155 ASN A 175 1 21 HELIX 8 AA8 GLU A 194 ARG A 211 1 18 HELIX 9 AA9 PRO A 217 HIS A 221 5 5 HELIX 10 AB1 THR A 253 SER A 268 1 16 HELIX 11 AB2 VAL A 276 LYS A 281 1 6 HELIX 12 AB3 LEU A 282 ARG A 284 5 3 HELIX 13 AB4 GLU A 298 GLU A 312 1 15 HELIX 14 AB5 ASN A 363 GLY A 384 1 22 HELIX 15 AB6 GLN A 394 TYR A 405 1 12 HELIX 16 AB7 THR A 473 ASP A 488 1 16 HELIX 17 AB8 SER A 499 ALA A 508 1 10 HELIX 18 AB9 SER A 515 LYS A 528 1 14 HELIX 19 AC1 ASP A 549 SER A 553 5 5 HELIX 20 AC2 THR B 27 GLU B 44 1 18 HELIX 21 AC3 PHE B 77 ARG B 83 1 7 HELIX 22 AC4 GLY B 112 VAL B 118 5 7 HELIX 23 AC5 ASP B 121 LYS B 126 1 6 HELIX 24 AC6 TYR B 127 ALA B 129 5 3 HELIX 25 AC7 SER B 134 GLU B 138 5 5 HELIX 26 AC8 LYS B 154 LYS B 173 1 20 HELIX 27 AC9 GLU B 194 GLY B 213 1 20 HELIX 28 AD1 HIS B 235 TRP B 239 5 5 HELIX 29 AD2 THR B 253 SER B 268 1 16 HELIX 30 AD3 ARG B 277 LEU B 283 1 7 HELIX 31 AD4 THR B 296 GLU B 312 1 17 HELIX 32 AD5 ASN B 363 GLY B 384 1 22 HELIX 33 AD6 GLN B 394 TRP B 402 1 9 HELIX 34 AD7 THR B 403 TYR B 405 5 3 SHEET 1 AA1 3 ILE A 47 LYS A 49 0 SHEET 2 AA1 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 AA1 3 PHE A 130 ILE A 132 -1 N ILE A 132 O ILE A 142 SHEET 1 AA2 2 VAL A 60 LYS A 64 0 SHEET 2 AA2 2 TRP A 71 VAL A 75 -1 O ARG A 72 N ILE A 63 SHEET 1 AA3 3 SER A 105 ASP A 110 0 SHEET 2 AA3 3 ASP A 186 SER A 191 -1 O SER A 191 N SER A 105 SHEET 3 AA3 3 VAL A 179 TYR A 183 -1 N VAL A 179 O GLY A 190 SHEET 1 AA4 3 PHE A 227 TRP A 229 0 SHEET 2 AA4 3 TYR A 232 LEU A 234 -1 O TYR A 232 N TRP A 229 SHEET 3 AA4 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 LYS A 347 TYR A 354 0 SHEET 2 AA5 5 GLN A 336 GLU A 344 -1 N ILE A 341 O LEU A 349 SHEET 3 AA5 5 ILE A 326 GLY A 333 -1 N ILE A 326 O TYR A 342 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 390 N ILE A 329 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 VAL A 466 THR A 470 0 SHEET 2 AA7 5 LEU A 452 THR A 459 -1 N GLY A 453 O LEU A 469 SHEET 3 AA7 5 GLU A 438 ASN A 447 -1 N ASP A 443 O GLY A 456 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA8 2 LYS B 11 LEU B 12 0 SHEET 2 AA8 2 THR B 84 GLN B 85 -1 O GLN B 85 N LYS B 11 SHEET 1 AA9 3 ILE B 47 LYS B 49 0 SHEET 2 AA9 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA9 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AB1 2 VAL B 60 LYS B 64 0 SHEET 2 AB1 2 TRP B 71 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 AB2 3 SER B 105 ASP B 110 0 SHEET 2 AB2 3 ASP B 186 SER B 191 -1 O VAL B 189 N THR B 107 SHEET 3 AB2 3 VAL B 179 TYR B 183 -1 N TYR B 183 O ASP B 186 SHEET 1 AB3 5 LYS B 347 ALA B 355 0 SHEET 2 AB3 5 GLN B 336 GLU B 344 -1 N TRP B 337 O TYR B 354 SHEET 3 AB3 5 ILE B 326 GLY B 333 -1 N GLN B 332 O GLN B 336 SHEET 4 AB3 5 LYS B 388 LEU B 391 1 O LYS B 388 N ALA B 327 SHEET 5 AB3 5 TRP B 414 PHE B 416 1 O GLU B 415 N PHE B 389 LINK O3' DG F 1 P OMC F 2 1555 1555 1.60 LINK O3' OMC F 2 P DC F 3 1555 1555 1.60 LINK O3' DC F 3 P OMC F 4 1555 1555 1.60 LINK O3' OMC F 4 P DC F 5 1555 1555 1.61 LINK O3' DG F 32 P DOC F 33 1555 1555 1.58 LINK OD1 ASP A 110 MG MG A 702 1555 1555 1.98 LINK OD2 ASP A 110 MG MG A 703 1555 1555 1.90 LINK O VAL A 111 MG MG A 702 1555 1555 2.08 LINK OD2 ASP A 185 MG MG A 702 1555 1555 1.97 LINK OD1 ASP A 185 MG MG A 703 1555 1555 2.24 LINK O2G DTP A 701 MG MG A 702 1555 1555 2.43 LINK O2B DTP A 701 MG MG A 702 1555 1555 2.72 LINK O2A DTP A 701 MG MG A 702 1555 1555 2.53 CISPEP 1 PRO A 225 PRO A 226 0 -1.26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 4483 SER A 553 TER 7704 TYR B 427 HETATM 7829 N1 OMC F 2 133.008 136.092 117.692 1.00 48.21 N HETATM 7830 C2 OMC F 2 134.027 136.895 117.156 1.00 57.53 C HETATM 7831 N3 OMC F 2 133.728 138.160 116.812 1.00 55.31 N HETATM 7832 C4 OMC F 2 132.522 138.647 116.971 1.00 48.73 C HETATM 7833 C5 OMC F 2 131.460 137.869 117.513 1.00 49.05 C HETATM 7834 C6 OMC F 2 131.768 136.608 117.855 1.00 51.03 C HETATM 7835 O2 OMC F 2 135.143 136.434 117.013 1.00 65.97 O HETATM 7836 N4 OMC F 2 132.301 139.906 116.609 1.00 56.72 N HETATM 7837 C1' OMC F 2 133.266 134.693 118.095 1.00 52.90 C HETATM 7838 C2' OMC F 2 133.941 134.614 119.468 1.00 52.93 C HETATM 7839 O2' OMC F 2 134.829 133.508 119.467 1.00 60.84 O HETATM 7840 CM2 OMC F 2 136.042 133.763 118.803 1.00 63.27 C HETATM 7841 C3' OMC F 2 132.742 134.341 120.363 1.00 50.39 C HETATM 7842 C4' OMC F 2 131.916 133.416 119.503 1.00 51.93 C HETATM 7843 O4' OMC F 2 132.034 134.005 118.187 1.00 52.35 O HETATM 7844 O3' OMC F 2 133.059 133.782 121.620 1.00 59.86 O HETATM 7845 C5' OMC F 2 130.473 133.276 119.901 1.00 64.33 C HETATM 7846 O5' OMC F 2 129.614 133.512 118.807 1.00 71.03 O HETATM 7847 P OMC F 2 128.374 134.493 118.943 1.00 65.71 P HETATM 7848 OP1 OMC F 2 127.427 133.930 119.991 1.00 69.79 O HETATM 7849 OP2 OMC F 2 128.881 135.916 119.079 1.00 64.13 O HETATM 7869 N1 OMC F 4 138.199 141.302 124.118 1.00 47.20 N HETATM 7870 C2 OMC F 4 137.999 142.597 123.614 1.00 60.76 C HETATM 7871 N3 OMC F 4 136.807 142.885 123.061 1.00 55.18 N HETATM 7872 C4 OMC F 4 135.848 141.995 122.980 1.00 46.11 C HETATM 7873 C5 OMC F 4 136.009 140.672 123.475 1.00 47.76 C HETATM 7874 C6 OMC F 4 137.201 140.393 124.027 1.00 50.55 C HETATM 7875 O2 OMC F 4 138.889 143.425 123.689 1.00 70.89 O HETATM 7876 N4 OMC F 4 134.699 142.357 122.417 1.00 53.53 N HETATM 7877 C1' OMC F 4 139.477 140.885 124.738 1.00 53.34 C HETATM 7878 C2' OMC F 4 139.692 141.512 126.116 1.00 56.79 C HETATM 7879 O2' OMC F 4 141.084 141.721 126.298 1.00 60.05 O HETATM 7880 CM2 OMC F 4 141.643 142.672 125.426 1.00 60.64 C HETATM 7881 C3' OMC F 4 139.200 140.398 127.027 1.00 60.19 C HETATM 7882 C4' OMC F 4 139.675 139.157 126.299 1.00 58.23 C HETATM 7883 O4' OMC F 4 139.463 139.483 124.905 1.00 62.95 O HETATM 7884 O3' OMC F 4 139.688 140.484 128.352 1.00 64.66 O HETATM 7885 C5' OMC F 4 138.960 137.878 126.641 1.00 51.74 C HETATM 7886 O5' OMC F 4 137.555 138.023 126.528 1.00 63.57 O HETATM 7887 P OMC F 4 136.636 136.768 126.204 1.00 74.82 P HETATM 7888 OP1 OMC F 4 136.804 135.755 127.327 1.00 71.10 O HETATM 7889 OP2 OMC F 4 135.250 137.281 125.855 1.00 66.70 O HETATM 8467 N1 DOC F 33 138.411 139.222 112.751 1.00 48.04 N HETATM 8468 C2 DOC F 33 137.113 138.769 112.984 1.00 56.93 C HETATM 8469 N3 DOC F 33 136.092 139.650 112.937 1.00 50.26 N HETATM 8470 C4 DOC F 33 136.322 140.934 112.659 1.00 53.07 C HETATM 8471 C5 DOC F 33 137.637 141.411 112.413 1.00 55.05 C HETATM 8472 C6 DOC F 33 138.642 140.528 112.468 1.00 42.75 C HETATM 8473 O2 DOC F 33 136.942 137.570 113.229 1.00 69.70 O HETATM 8474 N4 DOC F 33 135.287 141.754 112.638 1.00 54.66 N HETATM 8475 C1' DOC F 33 139.512 138.233 112.768 1.00 60.54 C HETATM 8476 C2' DOC F 33 139.764 137.561 111.424 1.00 55.25 C HETATM 8477 C3' DOC F 33 141.004 138.251 110.914 1.00 49.71 C HETATM 8478 C4' DOC F 33 141.749 138.559 112.183 1.00 51.39 C HETATM 8479 O4' DOC F 33 140.705 138.915 113.110 1.00 65.00 O HETATM 8480 C5' DOC F 33 142.735 139.689 112.102 1.00 52.60 C HETATM 8481 O5' DOC F 33 142.059 140.877 111.628 1.00 59.52 O HETATM 8482 P DOC F 33 142.659 142.321 111.990 1.00 60.72 P HETATM 8483 OP1 DOC F 33 143.971 142.501 111.297 1.00 58.34 O HETATM 8484 OP2 DOC F 33 141.623 143.359 111.695 1.00 63.06 O TER 8485 DOC F 33 HETATM 8486 PG DTP A 701 140.138 136.982 102.483 1.00 74.70 P HETATM 8487 O1G DTP A 701 140.288 136.215 101.242 1.00 65.77 O HETATM 8488 O2G DTP A 701 141.312 136.895 103.312 1.00 71.42 O HETATM 8489 O3G DTP A 701 139.740 138.370 102.253 1.00 71.91 O HETATM 8490 PB DTP A 701 138.451 135.675 104.615 1.00 67.77 P HETATM 8491 O1B DTP A 701 137.072 135.250 104.419 1.00 70.23 O HETATM 8492 O2B DTP A 701 139.446 134.685 104.999 1.00 69.21 O HETATM 8493 O3B DTP A 701 138.906 136.341 103.244 1.00 68.63 O HETATM 8494 PA DTP A 701 139.273 137.564 106.809 1.00 65.05 P HETATM 8495 O1A DTP A 701 138.847 138.964 106.988 1.00 69.71 O HETATM 8496 O2A DTP A 701 140.720 137.407 106.576 1.00 64.71 O HETATM 8497 O3A DTP A 701 138.440 136.926 105.604 1.00 56.12 O HETATM 8498 O5' DTP A 701 138.836 136.754 108.110 1.00 61.65 O HETATM 8499 C5' DTP A 701 139.036 135.364 108.386 1.00 52.33 C HETATM 8500 C4' DTP A 701 137.725 134.762 108.815 1.00 59.85 C HETATM 8501 O4' DTP A 701 137.207 135.480 109.950 1.00 68.16 O HETATM 8502 C3' DTP A 701 136.614 134.828 107.780 1.00 59.81 C HETATM 8503 O3' DTP A 701 136.703 133.730 106.887 1.00 65.26 O HETATM 8504 C2' DTP A 701 135.374 134.748 108.652 1.00 55.20 C HETATM 8505 C1' DTP A 701 135.786 135.502 109.903 1.00 56.45 C HETATM 8506 N9 DTP A 701 135.349 136.876 109.859 1.00 55.30 N HETATM 8507 C8 DTP A 701 136.098 137.983 109.619 1.00 56.84 C HETATM 8508 N7 DTP A 701 135.388 139.078 109.614 1.00 55.37 N HETATM 8509 C5 DTP A 701 134.091 138.655 109.847 1.00 59.45 C HETATM 8510 C6 DTP A 701 132.868 139.334 109.955 1.00 58.57 C HETATM 8511 N6 DTP A 701 132.739 140.643 109.825 1.00 64.19 N HETATM 8512 N1 DTP A 701 131.765 138.592 110.179 1.00 55.97 N HETATM 8513 C2 DTP A 701 131.886 137.269 110.298 1.00 49.86 C HETATM 8514 N3 DTP A 701 132.979 136.530 110.227 1.00 57.09 N HETATM 8515 C4 DTP A 701 134.058 137.293 109.995 1.00 58.68 C HETATM 8516 MG MG A 702 141.978 135.634 105.282 1.00 44.05 MG HETATM 8517 MG MG A 703 143.161 137.636 108.527 1.00106.04 MG CONECT 876 8516 CONECT 877 8517 CONECT 881 8516 CONECT 1483 8517 CONECT 1484 8516 CONECT 7815 7847 CONECT 7829 7830 7834 7837 CONECT 7830 7829 7831 7835 CONECT 7831 7830 7832 CONECT 7832 7831 7833 7836 CONECT 7833 7832 7834 CONECT 7834 7829 7833 CONECT 7835 7830 CONECT 7836 7832 CONECT 7837 7829 7838 7843 CONECT 7838 7837 7839 7841 CONECT 7839 7838 7840 CONECT 7840 7839 CONECT 7841 7838 7842 7844 CONECT 7842 7841 7843 7845 CONECT 7843 7837 7842 CONECT 7844 7841 7850 CONECT 7845 7842 7846 CONECT 7846 7845 7847 CONECT 7847 7815 7846 7848 7849 CONECT 7848 7847 CONECT 7849 7847 CONECT 7850 7844 CONECT 7858 7887 CONECT 7869 7870 7874 7877 CONECT 7870 7869 7871 7875 CONECT 7871 7870 7872 CONECT 7872 7871 7873 7876 CONECT 7873 7872 7874 CONECT 7874 7869 7873 CONECT 7875 7870 CONECT 7876 7872 CONECT 7877 7869 7878 7883 CONECT 7878 7877 7879 7881 CONECT 7879 7878 7880 CONECT 7880 7879 CONECT 7881 7878 7882 7884 CONECT 7882 7881 7883 7885 CONECT 7883 7877 7882 CONECT 7884 7881 7890 CONECT 7885 7882 7886 CONECT 7886 7885 7887 CONECT 7887 7858 7886 7888 7889 CONECT 7888 7887 CONECT 7889 7887 CONECT 7890 7884 CONECT 8453 8482 CONECT 8467 8468 8472 8475 CONECT 8468 8467 8469 8473 CONECT 8469 8468 8470 CONECT 8470 8469 8471 8474 CONECT 8471 8470 8472 CONECT 8472 8467 8471 CONECT 8473 8468 CONECT 8474 8470 CONECT 8475 8467 8476 8479 CONECT 8476 8475 8477 CONECT 8477 8476 8478 CONECT 8478 8477 8479 8480 CONECT 8479 8475 8478 CONECT 8480 8478 8481 CONECT 8481 8480 8482 CONECT 8482 8453 8481 8483 8484 CONECT 8483 8482 CONECT 8484 8482 CONECT 8486 8487 8488 8489 8493 CONECT 8487 8486 CONECT 8488 8486 8516 CONECT 8489 8486 CONECT 8490 8491 8492 8493 8497 CONECT 8491 8490 CONECT 8492 8490 8516 CONECT 8493 8486 8490 CONECT 8494 8495 8496 8497 8498 CONECT 8495 8494 CONECT 8496 8494 8516 CONECT 8497 8490 8494 CONECT 8498 8494 8499 CONECT 8499 8498 8500 CONECT 8500 8499 8501 8502 CONECT 8501 8500 8505 CONECT 8502 8500 8503 8504 CONECT 8503 8502 CONECT 8504 8502 8505 CONECT 8505 8501 8504 8506 CONECT 8506 8505 8507 8515 CONECT 8507 8506 8508 CONECT 8508 8507 8509 CONECT 8509 8508 8510 8515 CONECT 8510 8509 8511 8512 CONECT 8511 8510 CONECT 8512 8510 8513 CONECT 8513 8512 8514 CONECT 8514 8513 8515 CONECT 8515 8506 8509 8514 CONECT 8516 876 881 1484 8488 CONECT 8516 8492 8496 CONECT 8517 877 1483 MASTER 231 0 6 34 38 0 0 6 8514 3 103 81 END