data_8VD8 # _entry.id 8VD8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VD8 pdb_00008vd8 10.2210/pdb8vd8/pdb WWPDB D_1000279869 ? ? EMDB EMD-43145 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-01-10 2 'Structure model' 1 1 2024-01-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.title' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VD8 _pdbx_database_status.recvd_initial_deposition_date 2023-12-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-43033 'other EM volume' EMDB . EMD-43142 'other EM volume' EMDB . EMD-43143 'other EM volume' EMDB 'SaPI1 portal structure in mature capsids containing DNA' EMD-43145 'associated EM volume' EMDB . EMD-43146 'other EM volume' EMDB . EMD-43147 'other EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email dokland@uab.edu _pdbx_contact_author.name_first Terje _pdbx_contact_author.name_last Dokland _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5655-4123 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kizziah, J.L.' 1 0000-0002-2608-8595 'Mukherjee, A.' 2 0000-0002-4458-3901 'Dokland, T.' 3 0000-0001-5655-4123 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Mol.Biol. _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 436 _citation.language ? _citation.page_first 168415 _citation.page_last 168415 _citation.title 'Structure of the Portal Complex from Staphylococcus aureus Pathogenicity Island 1 Transducing Particles In Situ and In Isolation.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2023.168415 _citation.pdbx_database_id_PubMed 38135177 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mukherjee, A.' 1 ? primary 'Kizziah, J.L.' 2 ? primary 'Hawkins, N.C.' 3 ? primary 'Nasef, M.O.' 4 ? primary 'Parker, L.K.' 5 ? primary 'Dokland, T.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Portal protein' 59551.820 1 ? ? ? ? 2 polymer man Connector 12809.583 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRR KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDD ETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSF ERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAE GRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRR RAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDEKESI KKAQKGIYKDPRDINDDEQDDDTKDTVDKKE ; ;MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRR KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDD ETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSF ERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAE GRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRR RAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDPELEVKKIEEDEKESI KKAQKGIYKDPRDINDDEQDDDTKDTVDKKE ; A ? 2 'polypeptide(L)' no no ;MTTLADVKKRIGLKDEKQDEQLEEIIKSCESQLLSMLPIEVEQIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRSNAY ELNDFKEYEAIIDNYFNARTRTKKGRAVFF ; ;MTTLADVKKRIGLKDEKQDEQLEEIIKSCESQLLSMLPIEVEQIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRSNAY ELNDFKEYEAIIDNYFNARTRTKKGRAVFF ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 LYS n 1 4 VAL n 1 5 ASN n 1 6 GLU n 1 7 PHE n 1 8 GLU n 1 9 THR n 1 10 ASP n 1 11 THR n 1 12 ASP n 1 13 LEU n 1 14 ARG n 1 15 GLY n 1 16 ASN n 1 17 ILE n 1 18 ASN n 1 19 TYR n 1 20 LEU n 1 21 PHE n 1 22 ASN n 1 23 ASP n 1 24 GLU n 1 25 ALA n 1 26 ASN n 1 27 VAL n 1 28 VAL n 1 29 TYR n 1 30 THR n 1 31 TYR n 1 32 ASP n 1 33 GLY n 1 34 THR n 1 35 GLU n 1 36 SER n 1 37 ASP n 1 38 LEU n 1 39 LEU n 1 40 GLN n 1 41 ASN n 1 42 VAL n 1 43 ASN n 1 44 GLU n 1 45 VAL n 1 46 SER n 1 47 LYS n 1 48 TYR n 1 49 ILE n 1 50 GLU n 1 51 HIS n 1 52 HIS n 1 53 MET n 1 54 ASP n 1 55 TYR n 1 56 GLN n 1 57 ARG n 1 58 PRO n 1 59 ARG n 1 60 LEU n 1 61 LYS n 1 62 VAL n 1 63 LEU n 1 64 SER n 1 65 ASP n 1 66 TYR n 1 67 TYR n 1 68 GLU n 1 69 GLY n 1 70 LYS n 1 71 THR n 1 72 LYS n 1 73 ASN n 1 74 LEU n 1 75 VAL n 1 76 GLU n 1 77 LEU n 1 78 THR n 1 79 ARG n 1 80 ARG n 1 81 LYS n 1 82 GLU n 1 83 GLU n 1 84 TYR n 1 85 MET n 1 86 ALA n 1 87 ASP n 1 88 ASN n 1 89 ARG n 1 90 VAL n 1 91 ALA n 1 92 HIS n 1 93 ASP n 1 94 TYR n 1 95 ALA n 1 96 SER n 1 97 TYR n 1 98 ILE n 1 99 SER n 1 100 ASP n 1 101 PHE n 1 102 ILE n 1 103 ASN n 1 104 GLY n 1 105 TYR n 1 106 PHE n 1 107 LEU n 1 108 GLY n 1 109 ASN n 1 110 PRO n 1 111 ILE n 1 112 GLN n 1 113 TYR n 1 114 GLN n 1 115 ASP n 1 116 ASP n 1 117 ASP n 1 118 LYS n 1 119 ASP n 1 120 VAL n 1 121 LEU n 1 122 GLU n 1 123 ALA n 1 124 ILE n 1 125 GLU n 1 126 ALA n 1 127 PHE n 1 128 ASN n 1 129 ASP n 1 130 LEU n 1 131 ASN n 1 132 ASP n 1 133 VAL n 1 134 GLU n 1 135 SER n 1 136 HIS n 1 137 ASN n 1 138 ARG n 1 139 SER n 1 140 LEU n 1 141 GLY n 1 142 LEU n 1 143 ASP n 1 144 LEU n 1 145 SER n 1 146 ILE n 1 147 TYR n 1 148 GLY n 1 149 LYS n 1 150 ALA n 1 151 TYR n 1 152 GLU n 1 153 LEU n 1 154 MET n 1 155 ILE n 1 156 ARG n 1 157 ASN n 1 158 GLN n 1 159 ASP n 1 160 ASP n 1 161 GLU n 1 162 THR n 1 163 ARG n 1 164 LEU n 1 165 TYR n 1 166 LYS n 1 167 SER n 1 168 ASP n 1 169 ALA n 1 170 MET n 1 171 SER n 1 172 THR n 1 173 PHE n 1 174 ILE n 1 175 ILE n 1 176 TYR n 1 177 ASP n 1 178 ASN n 1 179 THR n 1 180 VAL n 1 181 GLU n 1 182 ARG n 1 183 ASN n 1 184 SER n 1 185 ILE n 1 186 ALA n 1 187 GLY n 1 188 VAL n 1 189 ARG n 1 190 TYR n 1 191 LEU n 1 192 ARG n 1 193 THR n 1 194 LYS n 1 195 PRO n 1 196 ILE n 1 197 ASP n 1 198 LYS n 1 199 THR n 1 200 ASP n 1 201 GLU n 1 202 ASP n 1 203 GLU n 1 204 VAL n 1 205 PHE n 1 206 THR n 1 207 VAL n 1 208 ASP n 1 209 LEU n 1 210 PHE n 1 211 THR n 1 212 SER n 1 213 HIS n 1 214 GLY n 1 215 VAL n 1 216 TYR n 1 217 ARG n 1 218 TYR n 1 219 LEU n 1 220 THR n 1 221 ASN n 1 222 ARG n 1 223 THR n 1 224 ASN n 1 225 GLY n 1 226 LEU n 1 227 LYS n 1 228 LEU n 1 229 THR n 1 230 PRO n 1 231 ARG n 1 232 GLU n 1 233 ASN n 1 234 SER n 1 235 PHE n 1 236 GLU n 1 237 SER n 1 238 HIS n 1 239 SER n 1 240 PHE n 1 241 GLU n 1 242 ARG n 1 243 MET n 1 244 PRO n 1 245 ILE n 1 246 THR n 1 247 GLU n 1 248 PHE n 1 249 SER n 1 250 ASN n 1 251 ASN n 1 252 GLU n 1 253 ARG n 1 254 ARG n 1 255 LYS n 1 256 GLY n 1 257 ASP n 1 258 TYR n 1 259 GLU n 1 260 LYS n 1 261 VAL n 1 262 ILE n 1 263 THR n 1 264 LEU n 1 265 ILE n 1 266 ASP n 1 267 LEU n 1 268 TYR n 1 269 ASP n 1 270 ASN n 1 271 ALA n 1 272 GLU n 1 273 SER n 1 274 ASP n 1 275 THR n 1 276 ALA n 1 277 ASN n 1 278 TYR n 1 279 MET n 1 280 SER n 1 281 ASP n 1 282 LEU n 1 283 ASN n 1 284 ASP n 1 285 ALA n 1 286 MET n 1 287 LEU n 1 288 LEU n 1 289 ILE n 1 290 LYS n 1 291 GLY n 1 292 ASN n 1 293 LEU n 1 294 ASN n 1 295 LEU n 1 296 ASP n 1 297 PRO n 1 298 VAL n 1 299 GLU n 1 300 VAL n 1 301 ARG n 1 302 LYS n 1 303 GLN n 1 304 LYS n 1 305 GLU n 1 306 ALA n 1 307 ASN n 1 308 VAL n 1 309 LEU n 1 310 PHE n 1 311 LEU n 1 312 GLU n 1 313 PRO n 1 314 THR n 1 315 VAL n 1 316 TYR n 1 317 VAL n 1 318 ASP n 1 319 ALA n 1 320 GLU n 1 321 GLY n 1 322 ARG n 1 323 GLU n 1 324 THR n 1 325 GLU n 1 326 GLY n 1 327 SER n 1 328 VAL n 1 329 ASP n 1 330 GLY n 1 331 GLY n 1 332 TYR n 1 333 ILE n 1 334 TYR n 1 335 LYS n 1 336 GLN n 1 337 TYR n 1 338 ASP n 1 339 VAL n 1 340 GLN n 1 341 GLY n 1 342 THR n 1 343 GLU n 1 344 ALA n 1 345 TYR n 1 346 LYS n 1 347 ASP n 1 348 ARG n 1 349 LEU n 1 350 ASN n 1 351 SER n 1 352 ASP n 1 353 ILE n 1 354 HIS n 1 355 MET n 1 356 PHE n 1 357 THR n 1 358 ASN n 1 359 THR n 1 360 PRO n 1 361 ASN n 1 362 MET n 1 363 LYS n 1 364 ASP n 1 365 ASP n 1 366 ASN n 1 367 PHE n 1 368 SER n 1 369 GLY n 1 370 THR n 1 371 GLN n 1 372 SER n 1 373 GLY n 1 374 GLU n 1 375 ALA n 1 376 MET n 1 377 LYS n 1 378 TYR n 1 379 LYS n 1 380 LEU n 1 381 PHE n 1 382 GLY n 1 383 LEU n 1 384 GLU n 1 385 GLN n 1 386 ARG n 1 387 THR n 1 388 LYS n 1 389 THR n 1 390 LYS n 1 391 GLU n 1 392 GLY n 1 393 LEU n 1 394 PHE n 1 395 THR n 1 396 LYS n 1 397 GLY n 1 398 LEU n 1 399 ARG n 1 400 ARG n 1 401 ARG n 1 402 ALA n 1 403 LYS n 1 404 LEU n 1 405 LEU n 1 406 GLU n 1 407 THR n 1 408 ILE n 1 409 LEU n 1 410 LYS n 1 411 ASN n 1 412 THR n 1 413 ARG n 1 414 SER n 1 415 ILE n 1 416 ASP n 1 417 ALA n 1 418 ASN n 1 419 LYS n 1 420 ASP n 1 421 PHE n 1 422 ASN n 1 423 THR n 1 424 VAL n 1 425 ARG n 1 426 TYR n 1 427 VAL n 1 428 TYR n 1 429 ASN n 1 430 ARG n 1 431 ASN n 1 432 LEU n 1 433 PRO n 1 434 LYS n 1 435 SER n 1 436 LEU n 1 437 ILE n 1 438 GLU n 1 439 GLU n 1 440 LEU n 1 441 LYS n 1 442 ALA n 1 443 TYR n 1 444 ILE n 1 445 ASP n 1 446 SER n 1 447 GLY n 1 448 GLY n 1 449 LYS n 1 450 ILE n 1 451 SER n 1 452 GLN n 1 453 THR n 1 454 THR n 1 455 LEU n 1 456 MET n 1 457 SER n 1 458 LEU n 1 459 PHE n 1 460 SER n 1 461 PHE n 1 462 PHE n 1 463 GLN n 1 464 ASP n 1 465 PRO n 1 466 GLU n 1 467 LEU n 1 468 GLU n 1 469 VAL n 1 470 LYS n 1 471 LYS n 1 472 ILE n 1 473 GLU n 1 474 GLU n 1 475 ASP n 1 476 GLU n 1 477 LYS n 1 478 GLU n 1 479 SER n 1 480 ILE n 1 481 LYS n 1 482 LYS n 1 483 ALA n 1 484 GLN n 1 485 LYS n 1 486 GLY n 1 487 ILE n 1 488 TYR n 1 489 LYS n 1 490 ASP n 1 491 PRO n 1 492 ARG n 1 493 ASP n 1 494 ILE n 1 495 ASN n 1 496 ASP n 1 497 ASP n 1 498 GLU n 1 499 GLN n 1 500 ASP n 1 501 ASP n 1 502 ASP n 1 503 THR n 1 504 LYS n 1 505 ASP n 1 506 THR n 1 507 VAL n 1 508 ASP n 1 509 LYS n 1 510 LYS n 1 511 GLU n 2 1 MET n 2 2 THR n 2 3 THR n 2 4 LEU n 2 5 ALA n 2 6 ASP n 2 7 VAL n 2 8 LYS n 2 9 LYS n 2 10 ARG n 2 11 ILE n 2 12 GLY n 2 13 LEU n 2 14 LYS n 2 15 ASP n 2 16 GLU n 2 17 LYS n 2 18 GLN n 2 19 ASP n 2 20 GLU n 2 21 GLN n 2 22 LEU n 2 23 GLU n 2 24 GLU n 2 25 ILE n 2 26 ILE n 2 27 LYS n 2 28 SER n 2 29 CYS n 2 30 GLU n 2 31 SER n 2 32 GLN n 2 33 LEU n 2 34 LEU n 2 35 SER n 2 36 MET n 2 37 LEU n 2 38 PRO n 2 39 ILE n 2 40 GLU n 2 41 VAL n 2 42 GLU n 2 43 GLN n 2 44 ILE n 2 45 PRO n 2 46 GLU n 2 47 ARG n 2 48 PHE n 2 49 SER n 2 50 TYR n 2 51 MET n 2 52 ILE n 2 53 LYS n 2 54 GLU n 2 55 VAL n 2 56 ALA n 2 57 VAL n 2 58 LYS n 2 59 ARG n 2 60 TYR n 2 61 ASN n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 ALA n 2 66 GLU n 2 67 GLY n 2 68 MET n 2 69 THR n 2 70 SER n 2 71 GLU n 2 72 ALA n 2 73 VAL n 2 74 ASP n 2 75 GLY n 2 76 ARG n 2 77 SER n 2 78 ASN n 2 79 ALA n 2 80 TYR n 2 81 GLU n 2 82 LEU n 2 83 ASN n 2 84 ASP n 2 85 PHE n 2 86 LYS n 2 87 GLU n 2 88 TYR n 2 89 GLU n 2 90 ALA n 2 91 ILE n 2 92 ILE n 2 93 ASP n 2 94 ASN n 2 95 TYR n 2 96 PHE n 2 97 ASN n 2 98 ALA n 2 99 ARG n 2 100 THR n 2 101 ARG n 2 102 THR n 2 103 LYS n 2 104 LYS n 2 105 GLY n 2 106 ARG n 2 107 ALA n 2 108 VAL n 2 109 PHE n 2 110 PHE n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 511 ? ? ? ? ? ? ? ? ? 'Dubowvirus dv80alpha' 53369 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 110 ? ? ? ? ? ? ? ? ? 'Dubowvirus dv80alpha' 53369 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 LEU 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 VAL 4 4 ? ? ? A . n A 1 5 ASN 5 5 ? ? ? A . n A 1 6 GLU 6 6 ? ? ? A . n A 1 7 PHE 7 7 ? ? ? A . n A 1 8 GLU 8 8 ? ? ? A . n A 1 9 THR 9 9 ? ? ? A . n A 1 10 ASP 10 10 ? ? ? A . n A 1 11 THR 11 11 ? ? ? A . n A 1 12 ASP 12 12 ? ? ? A . n A 1 13 LEU 13 13 ? ? ? A . n A 1 14 ARG 14 14 ? ? ? A . n A 1 15 GLY 15 15 ? ? ? A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 HIS 51 51 51 HIS HIS A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 THR 71 71 71 THR THR A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 MET 85 85 85 MET MET A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 GLU 122 122 122 GLU GLU A . n A 1 123 ALA 123 123 123 ALA ALA A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 ASN 128 128 128 ASN ASN A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 HIS 136 136 136 HIS HIS A . n A 1 137 ASN 137 137 137 ASN ASN A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 TYR 147 147 147 TYR TYR A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 ALA 150 150 150 ALA ALA A . n A 1 151 TYR 151 151 151 TYR TYR A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 MET 154 154 154 MET MET A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 ARG 156 156 156 ARG ARG A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 GLN 158 158 158 GLN GLN A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 THR 162 162 162 THR THR A . n A 1 163 ARG 163 163 163 ARG ARG A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 TYR 165 165 165 TYR TYR A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 SER 167 167 167 SER SER A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 ALA 169 169 169 ALA ALA A . n A 1 170 MET 170 170 170 MET MET A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 THR 172 172 172 THR THR A . n A 1 173 PHE 173 173 173 PHE PHE A . n A 1 174 ILE 174 174 174 ILE ILE A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 TYR 176 176 176 TYR TYR A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 ASN 178 178 178 ASN ASN A . n A 1 179 THR 179 179 179 THR THR A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 GLU 181 181 181 GLU GLU A . n A 1 182 ARG 182 182 182 ARG ARG A . n A 1 183 ASN 183 183 183 ASN ASN A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 ILE 185 185 185 ILE ILE A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 VAL 188 188 188 VAL VAL A . n A 1 189 ARG 189 189 189 ARG ARG A . n A 1 190 TYR 190 190 190 TYR TYR A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 ARG 192 192 192 ARG ARG A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 PRO 195 195 195 PRO PRO A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 LYS 198 198 198 LYS LYS A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 ASP 200 200 200 ASP ASP A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 ASP 202 202 202 ASP ASP A . n A 1 203 GLU 203 203 203 GLU GLU A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 PHE 205 205 205 PHE PHE A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 ASP 208 208 208 ASP ASP A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 THR 211 211 211 THR THR A . n A 1 212 SER 212 212 212 SER SER A . n A 1 213 HIS 213 213 213 HIS HIS A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 VAL 215 215 215 VAL VAL A . n A 1 216 TYR 216 216 216 TYR TYR A . n A 1 217 ARG 217 217 217 ARG ARG A . n A 1 218 TYR 218 218 218 TYR TYR A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 THR 220 220 220 THR THR A . n A 1 221 ASN 221 221 221 ASN ASN A . n A 1 222 ARG 222 222 222 ARG ARG A . n A 1 223 THR 223 223 223 THR THR A . n A 1 224 ASN 224 224 224 ASN ASN A . n A 1 225 GLY 225 225 225 GLY GLY A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 LYS 227 227 227 LYS LYS A . n A 1 228 LEU 228 228 228 LEU LEU A . n A 1 229 THR 229 229 229 THR THR A . n A 1 230 PRO 230 230 230 PRO PRO A . n A 1 231 ARG 231 231 231 ARG ARG A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 ASN 233 233 233 ASN ASN A . n A 1 234 SER 234 234 234 SER SER A . n A 1 235 PHE 235 235 235 PHE PHE A . n A 1 236 GLU 236 236 236 GLU GLU A . n A 1 237 SER 237 237 237 SER SER A . n A 1 238 HIS 238 238 238 HIS HIS A . n A 1 239 SER 239 239 239 SER SER A . n A 1 240 PHE 240 240 240 PHE PHE A . n A 1 241 GLU 241 241 241 GLU GLU A . n A 1 242 ARG 242 242 242 ARG ARG A . n A 1 243 MET 243 243 243 MET MET A . n A 1 244 PRO 244 244 244 PRO PRO A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 THR 246 246 246 THR THR A . n A 1 247 GLU 247 247 247 GLU GLU A . n A 1 248 PHE 248 248 248 PHE PHE A . n A 1 249 SER 249 249 249 SER SER A . n A 1 250 ASN 250 250 250 ASN ASN A . n A 1 251 ASN 251 251 251 ASN ASN A . n A 1 252 GLU 252 252 252 GLU GLU A . n A 1 253 ARG 253 253 253 ARG ARG A . n A 1 254 ARG 254 254 254 ARG ARG A . n A 1 255 LYS 255 255 255 LYS LYS A . n A 1 256 GLY 256 256 256 GLY GLY A . n A 1 257 ASP 257 257 257 ASP ASP A . n A 1 258 TYR 258 258 258 TYR TYR A . n A 1 259 GLU 259 259 259 GLU GLU A . n A 1 260 LYS 260 260 260 LYS LYS A . n A 1 261 VAL 261 261 261 VAL VAL A . n A 1 262 ILE 262 262 262 ILE ILE A . n A 1 263 THR 263 263 263 THR THR A . n A 1 264 LEU 264 264 264 LEU LEU A . n A 1 265 ILE 265 265 265 ILE ILE A . n A 1 266 ASP 266 266 266 ASP ASP A . n A 1 267 LEU 267 267 267 LEU LEU A . n A 1 268 TYR 268 268 268 TYR TYR A . n A 1 269 ASP 269 269 269 ASP ASP A . n A 1 270 ASN 270 270 270 ASN ASN A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 GLU 272 272 272 GLU GLU A . n A 1 273 SER 273 273 273 SER SER A . n A 1 274 ASP 274 274 274 ASP ASP A . n A 1 275 THR 275 275 275 THR THR A . n A 1 276 ALA 276 276 276 ALA ALA A . n A 1 277 ASN 277 277 277 ASN ASN A . n A 1 278 TYR 278 278 278 TYR TYR A . n A 1 279 MET 279 279 279 MET MET A . n A 1 280 SER 280 280 280 SER SER A . n A 1 281 ASP 281 281 281 ASP ASP A . n A 1 282 LEU 282 282 282 LEU LEU A . n A 1 283 ASN 283 283 283 ASN ASN A . n A 1 284 ASP 284 284 284 ASP ASP A . n A 1 285 ALA 285 285 285 ALA ALA A . n A 1 286 MET 286 286 286 MET MET A . n A 1 287 LEU 287 287 287 LEU LEU A . n A 1 288 LEU 288 288 288 LEU LEU A . n A 1 289 ILE 289 289 289 ILE ILE A . n A 1 290 LYS 290 290 290 LYS LYS A . n A 1 291 GLY 291 291 291 GLY GLY A . n A 1 292 ASN 292 292 292 ASN ASN A . n A 1 293 LEU 293 293 293 LEU LEU A . n A 1 294 ASN 294 294 294 ASN ASN A . n A 1 295 LEU 295 295 295 LEU LEU A . n A 1 296 ASP 296 296 296 ASP ASP A . n A 1 297 PRO 297 297 297 PRO PRO A . n A 1 298 VAL 298 298 298 VAL VAL A . n A 1 299 GLU 299 299 299 GLU GLU A . n A 1 300 VAL 300 300 300 VAL VAL A . n A 1 301 ARG 301 301 301 ARG ARG A . n A 1 302 LYS 302 302 302 LYS LYS A . n A 1 303 GLN 303 303 303 GLN GLN A . n A 1 304 LYS 304 304 304 LYS LYS A . n A 1 305 GLU 305 305 305 GLU GLU A . n A 1 306 ALA 306 306 306 ALA ALA A . n A 1 307 ASN 307 307 307 ASN ASN A . n A 1 308 VAL 308 308 308 VAL VAL A . n A 1 309 LEU 309 309 309 LEU LEU A . n A 1 310 PHE 310 310 310 PHE PHE A . n A 1 311 LEU 311 311 311 LEU LEU A . n A 1 312 GLU 312 312 312 GLU GLU A . n A 1 313 PRO 313 313 313 PRO PRO A . n A 1 314 THR 314 314 314 THR THR A . n A 1 315 VAL 315 315 315 VAL VAL A . n A 1 316 TYR 316 316 316 TYR TYR A . n A 1 317 VAL 317 317 317 VAL VAL A . n A 1 318 ASP 318 318 318 ASP ASP A . n A 1 319 ALA 319 319 319 ALA ALA A . n A 1 320 GLU 320 320 320 GLU GLU A . n A 1 321 GLY 321 321 321 GLY GLY A . n A 1 322 ARG 322 322 322 ARG ARG A . n A 1 323 GLU 323 323 323 GLU GLU A . n A 1 324 THR 324 324 324 THR THR A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 GLY 326 326 326 GLY GLY A . n A 1 327 SER 327 327 327 SER SER A . n A 1 328 VAL 328 328 328 VAL VAL A . n A 1 329 ASP 329 329 329 ASP ASP A . n A 1 330 GLY 330 330 330 GLY GLY A . n A 1 331 GLY 331 331 331 GLY GLY A . n A 1 332 TYR 332 332 332 TYR TYR A . n A 1 333 ILE 333 333 333 ILE ILE A . n A 1 334 TYR 334 334 334 TYR TYR A . n A 1 335 LYS 335 335 335 LYS LYS A . n A 1 336 GLN 336 336 336 GLN GLN A . n A 1 337 TYR 337 337 337 TYR TYR A . n A 1 338 ASP 338 338 338 ASP ASP A . n A 1 339 VAL 339 339 339 VAL VAL A . n A 1 340 GLN 340 340 340 GLN GLN A . n A 1 341 GLY 341 341 341 GLY GLY A . n A 1 342 THR 342 342 342 THR THR A . n A 1 343 GLU 343 343 343 GLU GLU A . n A 1 344 ALA 344 344 344 ALA ALA A . n A 1 345 TYR 345 345 345 TYR TYR A . n A 1 346 LYS 346 346 346 LYS LYS A . n A 1 347 ASP 347 347 347 ASP ASP A . n A 1 348 ARG 348 348 348 ARG ARG A . n A 1 349 LEU 349 349 349 LEU LEU A . n A 1 350 ASN 350 350 350 ASN ASN A . n A 1 351 SER 351 351 351 SER SER A . n A 1 352 ASP 352 352 352 ASP ASP A . n A 1 353 ILE 353 353 353 ILE ILE A . n A 1 354 HIS 354 354 354 HIS HIS A . n A 1 355 MET 355 355 355 MET MET A . n A 1 356 PHE 356 356 356 PHE PHE A . n A 1 357 THR 357 357 357 THR THR A . n A 1 358 ASN 358 358 358 ASN ASN A . n A 1 359 THR 359 359 359 THR THR A . n A 1 360 PRO 360 360 360 PRO PRO A . n A 1 361 ASN 361 361 361 ASN ASN A . n A 1 362 MET 362 362 362 MET MET A . n A 1 363 LYS 363 363 363 LYS LYS A . n A 1 364 ASP 364 364 364 ASP ASP A . n A 1 365 ASP 365 365 365 ASP ASP A . n A 1 366 ASN 366 366 366 ASN ASN A . n A 1 367 PHE 367 367 367 PHE PHE A . n A 1 368 SER 368 368 368 SER SER A . n A 1 369 GLY 369 369 369 GLY GLY A . n A 1 370 THR 370 370 370 THR THR A . n A 1 371 GLN 371 371 371 GLN GLN A . n A 1 372 SER 372 372 372 SER SER A . n A 1 373 GLY 373 373 373 GLY GLY A . n A 1 374 GLU 374 374 374 GLU GLU A . n A 1 375 ALA 375 375 375 ALA ALA A . n A 1 376 MET 376 376 376 MET MET A . n A 1 377 LYS 377 377 377 LYS LYS A . n A 1 378 TYR 378 378 378 TYR TYR A . n A 1 379 LYS 379 379 379 LYS LYS A . n A 1 380 LEU 380 380 380 LEU LEU A . n A 1 381 PHE 381 381 381 PHE PHE A . n A 1 382 GLY 382 382 382 GLY GLY A . n A 1 383 LEU 383 383 383 LEU LEU A . n A 1 384 GLU 384 384 384 GLU GLU A . n A 1 385 GLN 385 385 385 GLN GLN A . n A 1 386 ARG 386 386 386 ARG ARG A . n A 1 387 THR 387 387 387 THR THR A . n A 1 388 LYS 388 388 388 LYS LYS A . n A 1 389 THR 389 389 389 THR THR A . n A 1 390 LYS 390 390 390 LYS LYS A . n A 1 391 GLU 391 391 391 GLU GLU A . n A 1 392 GLY 392 392 392 GLY GLY A . n A 1 393 LEU 393 393 393 LEU LEU A . n A 1 394 PHE 394 394 394 PHE PHE A . n A 1 395 THR 395 395 395 THR THR A . n A 1 396 LYS 396 396 396 LYS LYS A . n A 1 397 GLY 397 397 397 GLY GLY A . n A 1 398 LEU 398 398 398 LEU LEU A . n A 1 399 ARG 399 399 399 ARG ARG A . n A 1 400 ARG 400 400 400 ARG ARG A . n A 1 401 ARG 401 401 401 ARG ARG A . n A 1 402 ALA 402 402 402 ALA ALA A . n A 1 403 LYS 403 403 403 LYS LYS A . n A 1 404 LEU 404 404 404 LEU LEU A . n A 1 405 LEU 405 405 405 LEU LEU A . n A 1 406 GLU 406 406 406 GLU GLU A . n A 1 407 THR 407 407 407 THR THR A . n A 1 408 ILE 408 408 408 ILE ILE A . n A 1 409 LEU 409 409 409 LEU LEU A . n A 1 410 LYS 410 410 410 LYS LYS A . n A 1 411 ASN 411 411 411 ASN ASN A . n A 1 412 THR 412 412 412 THR THR A . n A 1 413 ARG 413 413 413 ARG ARG A . n A 1 414 SER 414 414 414 SER SER A . n A 1 415 ILE 415 415 415 ILE ILE A . n A 1 416 ASP 416 416 416 ASP ASP A . n A 1 417 ALA 417 417 417 ALA ALA A . n A 1 418 ASN 418 418 418 ASN ASN A . n A 1 419 LYS 419 419 419 LYS LYS A . n A 1 420 ASP 420 420 420 ASP ASP A . n A 1 421 PHE 421 421 421 PHE PHE A . n A 1 422 ASN 422 422 422 ASN ASN A . n A 1 423 THR 423 423 423 THR THR A . n A 1 424 VAL 424 424 424 VAL VAL A . n A 1 425 ARG 425 425 425 ARG ARG A . n A 1 426 TYR 426 426 426 TYR TYR A . n A 1 427 VAL 427 427 427 VAL VAL A . n A 1 428 TYR 428 428 428 TYR TYR A . n A 1 429 ASN 429 429 429 ASN ASN A . n A 1 430 ARG 430 430 430 ARG ARG A . n A 1 431 ASN 431 431 431 ASN ASN A . n A 1 432 LEU 432 432 432 LEU LEU A . n A 1 433 PRO 433 433 433 PRO PRO A . n A 1 434 LYS 434 434 434 LYS LYS A . n A 1 435 SER 435 435 435 SER SER A . n A 1 436 LEU 436 436 436 LEU LEU A . n A 1 437 ILE 437 437 437 ILE ILE A . n A 1 438 GLU 438 438 438 GLU GLU A . n A 1 439 GLU 439 439 439 GLU GLU A . n A 1 440 LEU 440 440 440 LEU LEU A . n A 1 441 LYS 441 441 441 LYS LYS A . n A 1 442 ALA 442 442 442 ALA ALA A . n A 1 443 TYR 443 443 443 TYR TYR A . n A 1 444 ILE 444 444 444 ILE ILE A . n A 1 445 ASP 445 445 445 ASP ASP A . n A 1 446 SER 446 446 446 SER SER A . n A 1 447 GLY 447 447 447 GLY GLY A . n A 1 448 GLY 448 448 448 GLY GLY A . n A 1 449 LYS 449 449 449 LYS LYS A . n A 1 450 ILE 450 450 450 ILE ILE A . n A 1 451 SER 451 451 451 SER SER A . n A 1 452 GLN 452 452 452 GLN GLN A . n A 1 453 THR 453 453 453 THR THR A . n A 1 454 THR 454 454 454 THR THR A . n A 1 455 LEU 455 455 455 LEU LEU A . n A 1 456 MET 456 456 456 MET MET A . n A 1 457 SER 457 457 457 SER SER A . n A 1 458 LEU 458 458 458 LEU LEU A . n A 1 459 PHE 459 459 459 PHE PHE A . n A 1 460 SER 460 460 460 SER SER A . n A 1 461 PHE 461 461 461 PHE PHE A . n A 1 462 PHE 462 462 462 PHE PHE A . n A 1 463 GLN 463 463 463 GLN GLN A . n A 1 464 ASP 464 464 464 ASP ASP A . n A 1 465 PRO 465 465 465 PRO PRO A . n A 1 466 GLU 466 466 466 GLU GLU A . n A 1 467 LEU 467 467 467 LEU LEU A . n A 1 468 GLU 468 468 468 GLU GLU A . n A 1 469 VAL 469 469 469 VAL VAL A . n A 1 470 LYS 470 470 470 LYS LYS A . n A 1 471 LYS 471 471 471 LYS LYS A . n A 1 472 ILE 472 472 472 ILE ILE A . n A 1 473 GLU 473 473 473 GLU GLU A . n A 1 474 GLU 474 474 474 GLU GLU A . n A 1 475 ASP 475 475 475 ASP ASP A . n A 1 476 GLU 476 476 476 GLU GLU A . n A 1 477 LYS 477 477 477 LYS LYS A . n A 1 478 GLU 478 478 478 GLU GLU A . n A 1 479 SER 479 479 479 SER SER A . n A 1 480 ILE 480 480 480 ILE ILE A . n A 1 481 LYS 481 481 481 LYS LYS A . n A 1 482 LYS 482 482 ? ? ? A . n A 1 483 ALA 483 483 ? ? ? A . n A 1 484 GLN 484 484 ? ? ? A . n A 1 485 LYS 485 485 ? ? ? A . n A 1 486 GLY 486 486 ? ? ? A . n A 1 487 ILE 487 487 ? ? ? A . n A 1 488 TYR 488 488 ? ? ? A . n A 1 489 LYS 489 489 ? ? ? A . n A 1 490 ASP 490 490 ? ? ? A . n A 1 491 PRO 491 491 ? ? ? A . n A 1 492 ARG 492 492 ? ? ? A . n A 1 493 ASP 493 493 ? ? ? A . n A 1 494 ILE 494 494 ? ? ? A . n A 1 495 ASN 495 495 ? ? ? A . n A 1 496 ASP 496 496 ? ? ? A . n A 1 497 ASP 497 497 ? ? ? A . n A 1 498 GLU 498 498 ? ? ? A . n A 1 499 GLN 499 499 ? ? ? A . n A 1 500 ASP 500 500 ? ? ? A . n A 1 501 ASP 501 501 ? ? ? A . n A 1 502 ASP 502 502 ? ? ? A . n A 1 503 THR 503 503 ? ? ? A . n A 1 504 LYS 504 504 ? ? ? A . n A 1 505 ASP 505 505 ? ? ? A . n A 1 506 THR 506 506 ? ? ? A . n A 1 507 VAL 507 507 ? ? ? A . n A 1 508 ASP 508 508 ? ? ? A . n A 1 509 LYS 509 509 ? ? ? A . n A 1 510 LYS 510 510 ? ? ? A . n A 1 511 GLU 511 511 ? ? ? A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 THR 2 2 ? ? ? B . n B 2 3 THR 3 3 ? ? ? B . n B 2 4 LEU 4 4 ? ? ? B . n B 2 5 ALA 5 5 ? ? ? B . n B 2 6 ASP 6 6 ? ? ? B . n B 2 7 VAL 7 7 ? ? ? B . n B 2 8 LYS 8 8 ? ? ? B . n B 2 9 LYS 9 9 ? ? ? B . n B 2 10 ARG 10 10 ? ? ? B . n B 2 11 ILE 11 11 ? ? ? B . n B 2 12 GLY 12 12 ? ? ? B . n B 2 13 LEU 13 13 ? ? ? B . n B 2 14 LYS 14 14 ? ? ? B . n B 2 15 ASP 15 15 ? ? ? B . n B 2 16 GLU 16 16 ? ? ? B . n B 2 17 LYS 17 17 ? ? ? B . n B 2 18 GLN 18 18 ? ? ? B . n B 2 19 ASP 19 19 ? ? ? B . n B 2 20 GLU 20 20 ? ? ? B . n B 2 21 GLN 21 21 ? ? ? B . n B 2 22 LEU 22 22 ? ? ? B . n B 2 23 GLU 23 23 ? ? ? B . n B 2 24 GLU 24 24 ? ? ? B . n B 2 25 ILE 25 25 ? ? ? B . n B 2 26 ILE 26 26 ? ? ? B . n B 2 27 LYS 27 27 ? ? ? B . n B 2 28 SER 28 28 ? ? ? B . n B 2 29 CYS 29 29 ? ? ? B . n B 2 30 GLU 30 30 ? ? ? B . n B 2 31 SER 31 31 ? ? ? B . n B 2 32 GLN 32 32 ? ? ? B . n B 2 33 LEU 33 33 ? ? ? B . n B 2 34 LEU 34 34 ? ? ? B . n B 2 35 SER 35 35 ? ? ? B . n B 2 36 MET 36 36 ? ? ? B . n B 2 37 LEU 37 37 ? ? ? B . n B 2 38 PRO 38 38 ? ? ? B . n B 2 39 ILE 39 39 ? ? ? B . n B 2 40 GLU 40 40 ? ? ? B . n B 2 41 VAL 41 41 ? ? ? B . n B 2 42 GLU 42 42 ? ? ? B . n B 2 43 GLN 43 43 ? ? ? B . n B 2 44 ILE 44 44 ? ? ? B . n B 2 45 PRO 45 45 ? ? ? B . n B 2 46 GLU 46 46 ? ? ? B . n B 2 47 ARG 47 47 ? ? ? B . n B 2 48 PHE 48 48 ? ? ? B . n B 2 49 SER 49 49 ? ? ? B . n B 2 50 TYR 50 50 ? ? ? B . n B 2 51 MET 51 51 ? ? ? B . n B 2 52 ILE 52 52 ? ? ? B . n B 2 53 LYS 53 53 ? ? ? B . n B 2 54 GLU 54 54 ? ? ? B . n B 2 55 VAL 55 55 ? ? ? B . n B 2 56 ALA 56 56 ? ? ? B . n B 2 57 VAL 57 57 ? ? ? B . n B 2 58 LYS 58 58 ? ? ? B . n B 2 59 ARG 59 59 ? ? ? B . n B 2 60 TYR 60 60 ? ? ? B . n B 2 61 ASN 61 61 ? ? ? B . n B 2 62 ARG 62 62 ? ? ? B . n B 2 63 ILE 63 63 ? ? ? B . n B 2 64 GLY 64 64 ? ? ? B . n B 2 65 ALA 65 65 ? ? ? B . n B 2 66 GLU 66 66 ? ? ? B . n B 2 67 GLY 67 67 ? ? ? B . n B 2 68 MET 68 68 ? ? ? B . n B 2 69 THR 69 69 ? ? ? B . n B 2 70 SER 70 70 ? ? ? B . n B 2 71 GLU 71 71 ? ? ? B . n B 2 72 ALA 72 72 ? ? ? B . n B 2 73 VAL 73 73 ? ? ? B . n B 2 74 ASP 74 74 ? ? ? B . n B 2 75 GLY 75 75 ? ? ? B . n B 2 76 ARG 76 76 ? ? ? B . n B 2 77 SER 77 77 ? ? ? B . n B 2 78 ASN 78 78 ? ? ? B . n B 2 79 ALA 79 79 ? ? ? B . n B 2 80 TYR 80 80 ? ? ? B . n B 2 81 GLU 81 81 ? ? ? B . n B 2 82 LEU 82 82 ? ? ? B . n B 2 83 ASN 83 83 ? ? ? B . n B 2 84 ASP 84 84 ? ? ? B . n B 2 85 PHE 85 85 ? ? ? B . n B 2 86 LYS 86 86 ? ? ? B . n B 2 87 GLU 87 87 ? ? ? B . n B 2 88 TYR 88 88 ? ? ? B . n B 2 89 GLU 89 89 ? ? ? B . n B 2 90 ALA 90 90 ? ? ? B . n B 2 91 ILE 91 91 91 ILE ILE B . n B 2 92 ILE 92 92 92 ILE ILE B . n B 2 93 ASP 93 93 93 ASP ASP B . n B 2 94 ASN 94 94 94 ASN ASN B . n B 2 95 TYR 95 95 95 TYR TYR B . n B 2 96 PHE 96 96 96 PHE PHE B . n B 2 97 ASN 97 97 97 ASN ASN B . n B 2 98 ALA 98 98 98 ALA ALA B . n B 2 99 ARG 99 99 99 ARG ARG B . n B 2 100 THR 100 100 100 THR THR B . n B 2 101 ARG 101 101 101 ARG ARG B . n B 2 102 THR 102 102 102 THR THR B . n B 2 103 LYS 103 103 103 LYS LYS B . n B 2 104 LYS 104 104 104 LYS LYS B . n B 2 105 GLY 105 105 105 GLY GLY B . n B 2 106 ARG 106 106 106 ARG ARG B . n B 2 107 ALA 107 107 107 ALA ALA B . n B 2 108 VAL 108 108 108 VAL VAL B . n B 2 109 PHE 109 109 109 PHE PHE B . n B 2 110 PHE 110 110 110 PHE PHE B . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8VD8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VD8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8VD8 _struct.title 'SaPI1 portal structure in mature capsids containing DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VD8 _struct_keywords.text 'portal, phage, sapi, STRUCTURAL PROTEIN' _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8VD8 8VD8 ? 1 ? 1 2 PDB 8VD8 8VD8 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8VD8 A 1 ? 511 ? 8VD8 1 ? 511 ? 1 511 2 2 8VD8 B 1 ? 110 ? 8VD8 1 ? 110 ? 1 110 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 1 2 A,B 1 3 A,B 1 4 A,B 1 5 A,B 1 6 A,B 1 7 A,B 1 8 A,B 1 9 A,B 1 10 A,B 1 11 A,B 1 12 A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 2 'point symmetry operation' ? ? 0.86602540 -0.50000000 0.00000000 101.18234943 0.50000000 0.86602540 0.00000000 -58.41765668 0.00000000 0.00000000 1.00000000 0.00000000 3 'point symmetry operation' ? ? 0.50000000 -0.86602540 0.00000000 218.01766278 0.86602540 0.50000000 0.00000000 -58.41765668 0.00000000 0.00000000 1.00000000 0.00000000 4 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 319.20001221 1.00000000 0.00000000 0.00000000 0.00000000 0.00000000 0.00000000 1.00000000 0.00000000 5 'point symmetry operation' ? ? -0.50000000 -0.86602540 0.00000000 377.61766889 0.86602540 -0.50000000 0.00000000 101.18234943 0.00000000 0.00000000 1.00000000 0.00000000 6 'point symmetry operation' ? ? -0.86602540 -0.50000000 0.00000000 377.61766889 0.50000000 -0.86602540 0.00000000 218.01766278 0.00000000 0.00000000 1.00000000 0.00000000 7 'point symmetry operation' ? ? -1.00000000 -0.00000000 0.00000000 319.20001221 0.00000000 -1.00000000 0.00000000 319.20001221 0.00000000 0.00000000 1.00000000 0.00000000 8 'point symmetry operation' ? ? -0.86602540 0.50000000 0.00000000 218.01766278 -0.50000000 -0.86602540 0.00000000 377.61766889 0.00000000 0.00000000 1.00000000 0.00000000 9 'point symmetry operation' ? ? -0.50000000 0.86602540 0.00000000 101.18234943 -0.86602540 -0.50000000 0.00000000 377.61766889 0.00000000 0.00000000 1.00000000 0.00000000 10 'point symmetry operation' ? ? -0.00000000 1.00000000 0.00000000 0.00000000 -1.00000000 -0.00000000 0.00000000 319.20001221 0.00000000 0.00000000 1.00000000 0.00000000 11 'point symmetry operation' ? ? 0.50000000 0.86602540 0.00000000 -58.41765668 -0.86602540 0.50000000 0.00000000 218.01766278 0.00000000 0.00000000 1.00000000 0.00000000 12 'point symmetry operation' ? ? 0.86602540 0.50000000 0.00000000 -58.41765668 -0.50000000 0.86602540 0.00000000 101.18234943 0.00000000 0.00000000 1.00000000 0.00000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 16 ? PHE A 21 ? ASN A 16 PHE A 21 1 ? 6 HELX_P HELX_P2 AA2 ASP A 23 ? VAL A 27 ? ASP A 23 VAL A 27 5 ? 5 HELX_P HELX_P3 AA3 THR A 34 ? GLN A 40 ? THR A 34 GLN A 40 1 ? 7 HELX_P HELX_P4 AA4 VAL A 42 ? TYR A 55 ? VAL A 42 TYR A 55 1 ? 14 HELX_P HELX_P5 AA5 TYR A 55 ? GLU A 68 ? TYR A 55 GLU A 68 1 ? 14 HELX_P HELX_P6 AA6 THR A 71 ? GLU A 76 ? THR A 71 GLU A 76 1 ? 6 HELX_P HELX_P7 AA7 ASP A 93 ? GLY A 108 ? ASP A 93 GLY A 108 1 ? 16 HELX_P HELX_P8 AA8 ASP A 117 ? ASP A 132 ? ASP A 117 ASP A 132 1 ? 16 HELX_P HELX_P9 AA9 ASP A 132 ? GLY A 148 ? ASP A 132 GLY A 148 1 ? 17 HELX_P HELX_P10 AB1 ASP A 168 ? MET A 170 ? ASP A 168 MET A 170 5 ? 3 HELX_P HELX_P11 AB2 VAL A 261 ? LEU A 282 ? VAL A 261 LEU A 282 1 ? 22 HELX_P HELX_P12 AB3 VAL A 298 ? GLU A 305 ? VAL A 298 GLU A 305 5 ? 8 HELX_P HELX_P13 AB4 ASP A 338 ? ASN A 358 ? ASP A 338 ASN A 358 1 ? 21 HELX_P HELX_P14 AB5 GLN A 371 ? LEU A 380 ? GLN A 371 LEU A 380 1 ? 10 HELX_P HELX_P15 AB6 LEU A 380 ? ASN A 411 ? LEU A 380 ASN A 411 1 ? 32 HELX_P HELX_P16 AB7 ASP A 420 ? VAL A 424 ? ASP A 420 VAL A 424 5 ? 5 HELX_P HELX_P17 AB8 SER A 435 ? SER A 446 ? SER A 435 SER A 446 1 ? 12 HELX_P HELX_P18 AB9 SER A 451 ? LEU A 458 ? SER A 451 LEU A 458 1 ? 8 HELX_P HELX_P19 AC1 ASP A 464 ? SER A 479 ? ASP A 464 SER A 479 1 ? 16 HELX_P HELX_P20 AC2 ILE B 92 ? ALA B 98 ? ILE B 92 ALA B 98 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 2 ? AA3 ? 3 ? AA4 ? 2 ? AA5 ? 3 ? AA6 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 29 ? TYR A 31 ? TYR A 29 TYR A 31 AA1 2 THR A 172 ? ASP A 177 ? THR A 172 ASP A 177 AA1 3 SER A 184 ? ARG A 192 ? SER A 184 ARG A 192 AA1 4 VAL A 204 ? PHE A 210 ? VAL A 204 PHE A 210 AA1 5 GLY A 214 ? ASN A 221 ? GLY A 214 ASN A 221 AA1 6 THR A 229 ? SER A 237 ? THR A 229 SER A 237 AA2 1 GLN A 112 ? GLN A 114 ? GLN A 112 GLN A 114 AA2 2 ARG A 425 ? VAL A 427 ? ARG A 425 VAL A 427 AA3 1 THR A 162 ? SER A 167 ? THR A 162 SER A 167 AA3 2 LYS A 149 ? ARG A 156 ? LYS A 149 ARG A 156 AA3 3 THR A 246 ? SER A 249 ? THR A 246 SER A 249 AA4 1 ALA A 285 ? GLY A 291 ? ALA A 285 GLY A 291 AA4 2 VAL A 328 ? TYR A 334 ? VAL A 328 TYR A 334 AA5 1 LEU A 293 ? ASN A 294 ? LEU A 293 ASN A 294 AA5 2 GLY B 105 ? VAL B 108 ? GLY B 105 VAL B 108 AA5 3 PHE A 310 ? GLU A 312 ? PHE A 310 GLU A 312 AA6 1 VAL A 315 ? VAL A 317 ? VAL A 315 VAL A 317 AA6 2 GLU A 323 ? GLU A 325 ? GLU A 323 GLU A 325 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 29 ? N TYR A 29 O TYR A 176 ? O TYR A 176 AA1 2 3 N ILE A 175 ? N ILE A 175 O ALA A 186 ? O ALA A 186 AA1 3 4 N GLY A 187 ? N GLY A 187 O PHE A 210 ? O PHE A 210 AA1 4 5 N VAL A 207 ? N VAL A 207 O TYR A 218 ? O TYR A 218 AA1 5 6 N VAL A 215 ? N VAL A 215 O GLU A 236 ? O GLU A 236 AA2 1 2 N GLN A 114 ? N GLN A 114 O ARG A 425 ? O ARG A 425 AA3 1 2 O TYR A 165 ? O TYR A 165 N LEU A 153 ? N LEU A 153 AA3 2 3 N ALA A 150 ? N ALA A 150 O PHE A 248 ? O PHE A 248 AA4 1 2 N LEU A 288 ? N LEU A 288 O GLY A 331 ? O GLY A 331 AA5 1 2 N ASN A 294 ? N ASN A 294 O ALA B 107 ? O ALA B 107 AA5 2 3 O ARG B 106 ? O ARG B 106 N GLU A 312 ? N GLU A 312 AA6 1 2 N TYR A 316 ? N TYR A 316 O THR A 324 ? O THR A 324 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 81 ? ? -165.46 100.43 2 1 THR A 193 ? ? -84.80 42.92 3 1 ASP A 197 ? ? -92.92 -64.02 4 1 ASN A 411 ? ? -69.31 5.85 5 1 ALA B 98 ? ? 59.24 -155.87 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8VD8 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8VD8 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 13411 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Dubowvirus dv80alpha' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 8VD8 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type SATELLITE _em_virus_entity.virus_isolate SPECIES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty NO _em_virus_entity.details ? # _em_vitrification.entry_id 8VD8 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8VD8 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A LEU 2 ? A LEU 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A VAL 4 ? A VAL 4 5 1 Y 1 A ASN 5 ? A ASN 5 6 1 Y 1 A GLU 6 ? A GLU 6 7 1 Y 1 A PHE 7 ? A PHE 7 8 1 Y 1 A GLU 8 ? A GLU 8 9 1 Y 1 A THR 9 ? A THR 9 10 1 Y 1 A ASP 10 ? A ASP 10 11 1 Y 1 A THR 11 ? A THR 11 12 1 Y 1 A ASP 12 ? A ASP 12 13 1 Y 1 A LEU 13 ? A LEU 13 14 1 Y 1 A ARG 14 ? A ARG 14 15 1 Y 1 A GLY 15 ? A GLY 15 16 1 Y 1 A LYS 482 ? A LYS 482 17 1 Y 1 A ALA 483 ? A ALA 483 18 1 Y 1 A GLN 484 ? A GLN 484 19 1 Y 1 A LYS 485 ? A LYS 485 20 1 Y 1 A GLY 486 ? A GLY 486 21 1 Y 1 A ILE 487 ? A ILE 487 22 1 Y 1 A TYR 488 ? A TYR 488 23 1 Y 1 A LYS 489 ? A LYS 489 24 1 Y 1 A ASP 490 ? A ASP 490 25 1 Y 1 A PRO 491 ? A PRO 491 26 1 Y 1 A ARG 492 ? A ARG 492 27 1 Y 1 A ASP 493 ? A ASP 493 28 1 Y 1 A ILE 494 ? A ILE 494 29 1 Y 1 A ASN 495 ? A ASN 495 30 1 Y 1 A ASP 496 ? A ASP 496 31 1 Y 1 A ASP 497 ? A ASP 497 32 1 Y 1 A GLU 498 ? A GLU 498 33 1 Y 1 A GLN 499 ? A GLN 499 34 1 Y 1 A ASP 500 ? A ASP 500 35 1 Y 1 A ASP 501 ? A ASP 501 36 1 Y 1 A ASP 502 ? A ASP 502 37 1 Y 1 A THR 503 ? A THR 503 38 1 Y 1 A LYS 504 ? A LYS 504 39 1 Y 1 A ASP 505 ? A ASP 505 40 1 Y 1 A THR 506 ? A THR 506 41 1 Y 1 A VAL 507 ? A VAL 507 42 1 Y 1 A ASP 508 ? A ASP 508 43 1 Y 1 A LYS 509 ? A LYS 509 44 1 Y 1 A LYS 510 ? A LYS 510 45 1 Y 1 A GLU 511 ? A GLU 511 46 1 Y 1 B MET 1 ? B MET 1 47 1 Y 1 B THR 2 ? B THR 2 48 1 Y 1 B THR 3 ? B THR 3 49 1 Y 1 B LEU 4 ? B LEU 4 50 1 Y 1 B ALA 5 ? B ALA 5 51 1 Y 1 B ASP 6 ? B ASP 6 52 1 Y 1 B VAL 7 ? B VAL 7 53 1 Y 1 B LYS 8 ? B LYS 8 54 1 Y 1 B LYS 9 ? B LYS 9 55 1 Y 1 B ARG 10 ? B ARG 10 56 1 Y 1 B ILE 11 ? B ILE 11 57 1 Y 1 B GLY 12 ? B GLY 12 58 1 Y 1 B LEU 13 ? B LEU 13 59 1 Y 1 B LYS 14 ? B LYS 14 60 1 Y 1 B ASP 15 ? B ASP 15 61 1 Y 1 B GLU 16 ? B GLU 16 62 1 Y 1 B LYS 17 ? B LYS 17 63 1 Y 1 B GLN 18 ? B GLN 18 64 1 Y 1 B ASP 19 ? B ASP 19 65 1 Y 1 B GLU 20 ? B GLU 20 66 1 Y 1 B GLN 21 ? B GLN 21 67 1 Y 1 B LEU 22 ? B LEU 22 68 1 Y 1 B GLU 23 ? B GLU 23 69 1 Y 1 B GLU 24 ? B GLU 24 70 1 Y 1 B ILE 25 ? B ILE 25 71 1 Y 1 B ILE 26 ? B ILE 26 72 1 Y 1 B LYS 27 ? B LYS 27 73 1 Y 1 B SER 28 ? B SER 28 74 1 Y 1 B CYS 29 ? B CYS 29 75 1 Y 1 B GLU 30 ? B GLU 30 76 1 Y 1 B SER 31 ? B SER 31 77 1 Y 1 B GLN 32 ? B GLN 32 78 1 Y 1 B LEU 33 ? B LEU 33 79 1 Y 1 B LEU 34 ? B LEU 34 80 1 Y 1 B SER 35 ? B SER 35 81 1 Y 1 B MET 36 ? B MET 36 82 1 Y 1 B LEU 37 ? B LEU 37 83 1 Y 1 B PRO 38 ? B PRO 38 84 1 Y 1 B ILE 39 ? B ILE 39 85 1 Y 1 B GLU 40 ? B GLU 40 86 1 Y 1 B VAL 41 ? B VAL 41 87 1 Y 1 B GLU 42 ? B GLU 42 88 1 Y 1 B GLN 43 ? B GLN 43 89 1 Y 1 B ILE 44 ? B ILE 44 90 1 Y 1 B PRO 45 ? B PRO 45 91 1 Y 1 B GLU 46 ? B GLU 46 92 1 Y 1 B ARG 47 ? B ARG 47 93 1 Y 1 B PHE 48 ? B PHE 48 94 1 Y 1 B SER 49 ? B SER 49 95 1 Y 1 B TYR 50 ? B TYR 50 96 1 Y 1 B MET 51 ? B MET 51 97 1 Y 1 B ILE 52 ? B ILE 52 98 1 Y 1 B LYS 53 ? B LYS 53 99 1 Y 1 B GLU 54 ? B GLU 54 100 1 Y 1 B VAL 55 ? B VAL 55 101 1 Y 1 B ALA 56 ? B ALA 56 102 1 Y 1 B VAL 57 ? B VAL 57 103 1 Y 1 B LYS 58 ? B LYS 58 104 1 Y 1 B ARG 59 ? B ARG 59 105 1 Y 1 B TYR 60 ? B TYR 60 106 1 Y 1 B ASN 61 ? B ASN 61 107 1 Y 1 B ARG 62 ? B ARG 62 108 1 Y 1 B ILE 63 ? B ILE 63 109 1 Y 1 B GLY 64 ? B GLY 64 110 1 Y 1 B ALA 65 ? B ALA 65 111 1 Y 1 B GLU 66 ? B GLU 66 112 1 Y 1 B GLY 67 ? B GLY 67 113 1 Y 1 B MET 68 ? B MET 68 114 1 Y 1 B THR 69 ? B THR 69 115 1 Y 1 B SER 70 ? B SER 70 116 1 Y 1 B GLU 71 ? B GLU 71 117 1 Y 1 B ALA 72 ? B ALA 72 118 1 Y 1 B VAL 73 ? B VAL 73 119 1 Y 1 B ASP 74 ? B ASP 74 120 1 Y 1 B GLY 75 ? B GLY 75 121 1 Y 1 B ARG 76 ? B ARG 76 122 1 Y 1 B SER 77 ? B SER 77 123 1 Y 1 B ASN 78 ? B ASN 78 124 1 Y 1 B ALA 79 ? B ALA 79 125 1 Y 1 B TYR 80 ? B TYR 80 126 1 Y 1 B GLU 81 ? B GLU 81 127 1 Y 1 B LEU 82 ? B LEU 82 128 1 Y 1 B ASN 83 ? B ASN 83 129 1 Y 1 B ASP 84 ? B ASP 84 130 1 Y 1 B PHE 85 ? B PHE 85 131 1 Y 1 B LYS 86 ? B LYS 86 132 1 Y 1 B GLU 87 ? B GLU 87 133 1 Y 1 B TYR 88 ? B TYR 88 134 1 Y 1 B GLU 89 ? B GLU 89 135 1 Y 1 B ALA 90 ? B ALA 90 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TYR N N N N 318 TYR CA C N S 319 TYR C C N N 320 TYR O O N N 321 TYR CB C N N 322 TYR CG C Y N 323 TYR CD1 C Y N 324 TYR CD2 C Y N 325 TYR CE1 C Y N 326 TYR CE2 C Y N 327 TYR CZ C Y N 328 TYR OH O N N 329 TYR OXT O N N 330 TYR H H N N 331 TYR H2 H N N 332 TYR HA H N N 333 TYR HB2 H N N 334 TYR HB3 H N N 335 TYR HD1 H N N 336 TYR HD2 H N N 337 TYR HE1 H N N 338 TYR HE2 H N N 339 TYR HH H N N 340 TYR HXT H N N 341 VAL N N N N 342 VAL CA C N S 343 VAL C C N N 344 VAL O O N N 345 VAL CB C N N 346 VAL CG1 C N N 347 VAL CG2 C N N 348 VAL OXT O N N 349 VAL H H N N 350 VAL H2 H N N 351 VAL HA H N N 352 VAL HB H N N 353 VAL HG11 H N N 354 VAL HG12 H N N 355 VAL HG13 H N N 356 VAL HG21 H N N 357 VAL HG22 H N N 358 VAL HG23 H N N 359 VAL HXT H N N 360 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TYR N CA sing N N 304 TYR N H sing N N 305 TYR N H2 sing N N 306 TYR CA C sing N N 307 TYR CA CB sing N N 308 TYR CA HA sing N N 309 TYR C O doub N N 310 TYR C OXT sing N N 311 TYR CB CG sing N N 312 TYR CB HB2 sing N N 313 TYR CB HB3 sing N N 314 TYR CG CD1 doub Y N 315 TYR CG CD2 sing Y N 316 TYR CD1 CE1 sing Y N 317 TYR CD1 HD1 sing N N 318 TYR CD2 CE2 doub Y N 319 TYR CD2 HD2 sing N N 320 TYR CE1 CZ doub Y N 321 TYR CE1 HE1 sing N N 322 TYR CE2 CZ sing Y N 323 TYR CE2 HE2 sing N N 324 TYR CZ OH sing N N 325 TYR OH HH sing N N 326 TYR OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 53369 _em_entity_assembly_naturalsource.organism 'Dubowvirus dv80alpha' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 35.26 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/Office of the Director' 'United States' OD024978 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' CA013148 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM116789 3 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI083255 4 # _atom_sites.entry_id 8VD8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_