HEADER CELL ADHESION 15-DEC-23 8VDK TITLE CRYSTAL STRUCTURE OF LPXTG-MOTIF CELL WALL ANCHOR DOMAIN PROTEIN TITLE 2 MSCRAMM_SDRD FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE-ASPARTATE REPEAT-CONTAINING PROTEIN D; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS JH1; SOURCE 3 ORGANISM_TAXID: 359787; SOURCE 4 STRAIN: JH1; SOURCE 5 GENE: SDRD, SAV0562; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS MICROBIAL SURFACE COMPONENTS RECOGNIZING ADHESIVE MATRIX MOLECULES KEYWDS 2 (MSCRAMMS), LPXTG-MOTIF, CENTER FOR STRUCTURAL BIOLOGY OF INFECTIOUS KEYWDS 3 DISEASES, CSBID, STRUCTURAL GENOMICS, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,A.TAN,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL BIOLOGY OF AUTHOR 2 INFECTIOUS DISEASES (CSBID) REVDAT 1 07-AUG-24 8VDK 0 JRNL AUTH Y.KIM,A.TAN,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL BIOLOGY OF INFECTIOUS DISEASES (CSBID) JRNL TITL CRYSTAL STRUCTURE OF LPXTG-MOTIF CELL WALL ANCHOR DOMAIN JRNL TITL 2 PROTEIN MSCRAMM_SDRD FROM STAPHYLOCOCCUS AUREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 2124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3300 - 4.4400 1.00 2996 159 0.1583 0.1739 REMARK 3 2 4.4400 - 3.5300 1.00 2866 125 0.1548 0.1741 REMARK 3 3 3.5300 - 3.0800 1.00 2833 146 0.1803 0.2440 REMARK 3 4 3.0800 - 2.8000 1.00 2801 148 0.2017 0.2348 REMARK 3 5 2.8000 - 2.6000 1.00 2783 150 0.2100 0.2210 REMARK 3 6 2.6000 - 2.4500 1.00 2782 152 0.1939 0.2418 REMARK 3 7 2.4500 - 2.3200 1.00 2806 124 0.1884 0.1999 REMARK 3 8 2.3200 - 2.2200 1.00 2742 144 0.1742 0.1980 REMARK 3 9 2.2200 - 2.1400 1.00 2772 135 0.1770 0.2341 REMARK 3 10 2.1400 - 2.0600 1.00 2728 149 0.1783 0.2380 REMARK 3 11 2.0600 - 2.0000 1.00 2787 145 0.1781 0.1916 REMARK 3 12 2.0000 - 1.9400 1.00 2738 127 0.1775 0.2371 REMARK 3 13 1.9400 - 1.8900 1.00 2771 139 0.1890 0.2370 REMARK 3 14 1.8900 - 1.8400 1.00 2759 135 0.2201 0.2673 REMARK 3 15 1.8400 - 1.8000 0.98 2639 146 0.2475 0.2754 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.206 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.643 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3481 REMARK 3 ANGLE : 0.656 4722 REMARK 3 CHIRALITY : 0.052 540 REMARK 3 PLANARITY : 0.004 617 REMARK 3 DIHEDRAL : 13.055 1272 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4015 -3.1649 -15.9349 REMARK 3 T TENSOR REMARK 3 T11: 0.2141 T22: 0.2239 REMARK 3 T33: 0.2133 T12: -0.0310 REMARK 3 T13: -0.0421 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 0.8439 L22: 1.3517 REMARK 3 L33: 1.5526 L12: -0.1054 REMARK 3 L13: -0.7182 L23: 0.5850 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: -0.0620 S13: 0.0118 REMARK 3 S21: 0.1476 S22: -0.0537 S23: -0.0140 REMARK 3 S31: -0.0516 S32: 0.0546 S33: 0.0584 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1902 -4.1856 11.5136 REMARK 3 T TENSOR REMARK 3 T11: 0.3632 T22: 0.2834 REMARK 3 T33: 0.2055 T12: -0.0147 REMARK 3 T13: -0.0086 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 3.4527 L22: 4.2054 REMARK 3 L33: 2.9186 L12: 2.0096 REMARK 3 L13: -1.4328 L23: -0.8216 REMARK 3 S TENSOR REMARK 3 S11: 0.3138 S12: -0.5471 S13: 0.0282 REMARK 3 S21: 0.7036 S22: -0.2748 S23: 0.0217 REMARK 3 S31: -0.3239 S32: 0.1247 S33: 0.0201 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3605 -11.1158 -12.9896 REMARK 3 T TENSOR REMARK 3 T11: 0.1967 T22: 0.1977 REMARK 3 T33: 0.2217 T12: 0.0185 REMARK 3 T13: -0.0399 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.5281 L22: 0.5066 REMARK 3 L33: 4.0500 L12: -0.5038 REMARK 3 L13: -2.0375 L23: 0.9478 REMARK 3 S TENSOR REMARK 3 S11: 0.1234 S12: 0.0283 S13: 0.1584 REMARK 3 S21: 0.0552 S22: 0.0072 S23: -0.0650 REMARK 3 S31: -0.1392 S32: -0.2907 S33: 0.0779 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4289 -26.0819 -44.2790 REMARK 3 T TENSOR REMARK 3 T11: 0.1924 T22: 0.1769 REMARK 3 T33: 0.1855 T12: 0.0128 REMARK 3 T13: -0.0143 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 3.0202 L22: 1.8262 REMARK 3 L33: 1.4802 L12: -0.2711 REMARK 3 L13: -0.2269 L23: 0.0322 REMARK 3 S TENSOR REMARK 3 S11: 0.0444 S12: 0.0857 S13: 0.1373 REMARK 3 S21: -0.0876 S22: -0.0796 S23: -0.0367 REMARK 3 S31: 0.0274 S32: -0.0195 S33: 0.0241 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1000279950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44004 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16 M MAGNESIUM CHLORIDE, 0.08 REMARK 280 TRISHCL PH8.5, 24 %(W/V) PEG4000, 20 % (V/V) GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.52700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.22650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.41250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.22650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.52700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.41250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 317 REMARK 465 GLN A 318 REMARK 465 SER A 319 REMARK 465 GLY A 320 REMARK 465 GLY A 321 REMARK 465 ALA A 322 REMARK 465 GLY A 323 REMARK 465 ASN A 440 REMARK 465 LEU A 441 REMARK 465 GLY A 442 REMARK 465 ASP A 443 REMARK 465 TYR A 444 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 601 O HOH A 708 1.98 REMARK 500 O1 EDO A 511 O HOH A 601 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 124 67.53 -119.76 REMARK 500 ASP A 157 -131.06 58.73 REMARK 500 HIS A 171 75.15 -114.14 REMARK 500 ASP A 191 74.69 53.14 REMARK 500 ASN A 211 128.37 -38.90 REMARK 500 ASN A 253 -16.76 68.90 REMARK 500 ASN A 331 14.46 -160.99 REMARK 500 ASP A 412 -169.45 -102.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 515 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 18 OD1 REMARK 620 2 ASP A 20 OD1 80.5 REMARK 620 3 SER A 22 OG 89.7 83.9 REMARK 620 4 THR A 24 O 90.3 153.7 71.4 REMARK 620 5 ASP A 30 OD1 85.1 83.3 166.8 120.7 REMARK 620 6 ASP A 30 OD2 114.7 126.9 141.9 79.3 50.7 REMARK 620 7 HOH A 712 O 157.8 81.6 75.4 100.1 105.7 86.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 512 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 O REMARK 620 2 VAL A 44 O 96.6 REMARK 620 3 VAL A 103 O 154.5 100.3 REMARK 620 4 HOH A 633 O 89.7 172.8 72.6 REMARK 620 5 HOH A 861 O 84.5 97.5 74.5 79.6 REMARK 620 6 HOH A 865 O 100.7 98.3 95.6 83.9 162.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 516 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 331 OD1 REMARK 620 2 LEU A 428 O 84.0 REMARK 620 3 ASP A 431 OD1 82.2 87.7 REMARK 620 4 ASP A 431 OD2 132.9 104.3 52.7 REMARK 620 5 EDO A 511 O1 86.3 86.5 167.6 139.6 REMARK 620 6 EDO A 511 O2 149.6 82.4 124.1 76.9 65.9 REMARK 620 7 HOH A 601 O 76.4 130.1 132.9 122.7 47.3 92.0 REMARK 620 8 HOH A 708 O 92.6 176.4 93.1 79.0 92.0 100.1 47.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 513 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 336 OD1 REMARK 620 2 ASN A 338 OD1 86.7 REMARK 620 3 ASN A 340 OD1 89.5 72.0 REMARK 620 4 VAL A 342 O 94.2 158.2 86.1 REMARK 620 5 GLU A 344 OE1 169.5 83.5 83.9 93.5 REMARK 620 6 GLU A 347 OE1 83.2 124.1 161.6 77.6 105.5 REMARK 620 7 GLU A 347 OE2 94.3 74.6 146.1 127.0 86.8 51.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 514 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 409 O REMARK 620 2 ASP A 412 OD1 82.0 REMARK 620 3 ASN A 414 OD1 176.3 101.3 REMARK 620 4 SER A 429 O 98.0 141.6 78.4 REMARK 620 5 HOH A 678 O 79.9 71.6 99.5 70.6 REMARK 620 6 HOH A 694 O 98.8 72.2 83.9 144.3 143.6 REMARK 620 7 HOH A 742 O 91.9 144.8 86.3 73.6 141.6 74.6 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP98781 RELATED DB: TARGETTRACK DBREF 8VDK A 1 444 UNP Q99W47 SDRD_STAAM 244 687 SEQRES 1 A 444 SER LYS ASN VAL ASN ASP LEU ILE THR SER ASN THR THR SEQRES 2 A 444 LEU THR VAL VAL ASP ALA ASP ASN SER LYS THR ILE VAL SEQRES 3 A 444 PRO ALA GLN ASP TYR LEU SER LEU LYS SER GLN ILE THR SEQRES 4 A 444 VAL ASP ASP LYS VAL LYS SER GLY ASP TYR PHE THR ILE SEQRES 5 A 444 LYS TYR SER ASP THR VAL GLN VAL TYR GLY LEU ASN PRO SEQRES 6 A 444 GLU ASP ILE LYS ASN ILE GLY ASP ILE LYS ASP PRO ASN SEQRES 7 A 444 ASN GLY GLU THR ILE ALA THR ALA LYS HIS ASP THR ALA SEQRES 8 A 444 ASN ASN LEU ILE THR TYR THR PHE THR ASP TYR VAL ASP SEQRES 9 A 444 ARG PHE ASN SER VAL LYS MET GLY ILE ASN TYR SER ILE SEQRES 10 A 444 TYR MET ASP ALA ASP THR ILE PRO VAL ASP LYS LYS ASP SEQRES 11 A 444 VAL PRO PHE SER VAL THR ILE GLY ASN GLN ILE THR THR SEQRES 12 A 444 THR THR ALA ASP ILE THR TYR PRO ALA TYR LYS GLU ALA SEQRES 13 A 444 ASP ASN ASN SER ILE GLY SER ALA PHE THR GLU THR VAL SEQRES 14 A 444 SER HIS VAL GLY ASN VAL GLU ASP PRO GLY TYR TYR ASN SEQRES 15 A 444 GLN VAL VAL TYR VAL ASN PRO MET ASP LYS ASP LEU LYS SEQRES 16 A 444 GLY ALA LYS LEU LYS VAL GLU ALA TYR HIS PRO LYS TYR SEQRES 17 A 444 PRO THR ASN ILE GLY GLN ILE ASN GLN ASN VAL THR ASN SEQRES 18 A 444 ILE LYS ILE TYR ARG VAL PRO GLU GLY TYR THR LEU ASN SEQRES 19 A 444 LYS GLY TYR ASP VAL ASN THR ASN ASP LEU VAL ASP VAL SEQRES 20 A 444 THR ASP GLU PHE LYS ASN LYS MET THR TYR GLY SER ASN SEQRES 21 A 444 GLN SER VAL ASN LEU ASP PHE GLY ASP ILE THR SER ALA SEQRES 22 A 444 TYR VAL VAL MET VAL ASN THR LYS PHE GLN TYR THR ASN SEQRES 23 A 444 SER GLU SER PRO THR LEU VAL GLN MET ALA THR LEU SER SEQRES 24 A 444 SER THR GLY ASN LYS SER VAL SER THR GLY ASN ALA LEU SEQRES 25 A 444 GLY PHE THR ASN ASN GLN SER GLY GLY ALA GLY GLN GLU SEQRES 26 A 444 VAL TYR LYS ILE GLY ASN TYR VAL TRP GLU ASP THR ASN SEQRES 27 A 444 LYS ASN GLY VAL GLN GLU LEU GLY GLU LYS GLY VAL GLY SEQRES 28 A 444 ASN VAL THR VAL THR VAL PHE ASP ASN ASN THR ASN THR SEQRES 29 A 444 LYS VAL GLY GLU ALA VAL THR LYS GLU ASP GLY SER TYR SEQRES 30 A 444 LEU ILE PRO ASN LEU PRO ASN GLY ASP TYR ARG VAL GLU SEQRES 31 A 444 PHE SER ASN LEU PRO LYS GLY TYR GLU VAL THR PRO SER SEQRES 32 A 444 LYS GLN GLY ASN ASN GLU GLU LEU ASP SER ASN GLY LEU SEQRES 33 A 444 SER SER VAL ILE THR VAL ASN GLY LYS ASP ASN LEU SER SEQRES 34 A 444 ALA ASP LEU GLY ILE TYR LYS PRO LYS TYR ASN LEU GLY SEQRES 35 A 444 ASP TYR HET GOL A 501 6 HET GOL A 502 6 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET GOL A 507 6 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET CA A 512 1 HET CA A 513 1 HET CA A 514 1 HET CA A 515 1 HET CA A 516 1 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 4 EDO 8(C2 H6 O2) FORMUL 13 CA 5(CA 2+) FORMUL 18 HOH *324(H2 O) HELIX 1 AA1 VAL A 4 ASP A 6 5 3 HELIX 2 AA2 ASN A 64 ILE A 71 5 8 HELIX 3 AA3 THR A 90 ASN A 92 5 3 HELIX 4 AA4 ASP A 101 PHE A 106 1 6 HELIX 5 AA5 ALA A 121 ILE A 124 5 4 HELIX 6 AA6 ASN A 240 LEU A 244 5 5 HELIX 7 AA7 THR A 248 LYS A 252 5 5 SHEET 1 AA1 4 ILE A 8 VAL A 17 0 SHEET 2 AA1 4 TYR A 31 VAL A 40 -1 O THR A 39 N THR A 9 SHEET 3 AA1 4 LYS A 110 MET A 119 -1 O MET A 111 N ILE A 38 SHEET 4 AA1 4 VAL A 58 GLN A 59 -1 N GLN A 59 O TYR A 118 SHEET 1 AA2 6 ILE A 74 LYS A 75 0 SHEET 2 AA2 6 THR A 82 ASP A 89 -1 O ILE A 83 N ILE A 74 SHEET 3 AA2 6 LEU A 94 PHE A 99 -1 O LEU A 94 N ASP A 89 SHEET 4 AA2 6 TYR A 49 TYR A 54 -1 N PHE A 50 O TYR A 97 SHEET 5 AA2 6 LYS A 128 ILE A 137 -1 O THR A 136 N LYS A 53 SHEET 6 AA2 6 GLN A 140 ILE A 148 -1 O THR A 144 N PHE A 133 SHEET 1 AA3 6 LYS A 154 ALA A 156 0 SHEET 2 AA3 6 ASN A 159 SER A 170 -1 O ASN A 159 N ALA A 156 SHEET 3 AA3 6 GLY A 179 VAL A 187 -1 O TYR A 180 N VAL A 169 SHEET 4 AA3 6 TYR A 274 LYS A 281 -1 O TYR A 274 N VAL A 187 SHEET 5 AA3 6 ASN A 221 ARG A 226 -1 N ASN A 221 O ASN A 279 SHEET 6 AA3 6 VAL A 245 ASP A 246 -1 O VAL A 245 N ARG A 226 SHEET 1 AA4 5 MET A 255 GLY A 258 0 SHEET 2 AA4 5 SER A 262 ILE A 270 -1 O ASN A 264 N THR A 256 SHEET 3 AA4 5 LEU A 194 GLU A 202 -1 N LEU A 199 O LEU A 265 SHEET 4 AA4 5 THR A 291 SER A 299 -1 O MET A 295 N GLU A 202 SHEET 5 AA4 5 VAL A 306 GLY A 313 -1 O LEU A 312 N LEU A 292 SHEET 1 AA5 4 SER A 376 LEU A 382 0 SHEET 2 AA5 4 TYR A 327 GLU A 335 -1 N TYR A 327 O LEU A 382 SHEET 3 AA5 4 ASN A 427 TYR A 435 1 O ALA A 430 N GLY A 330 SHEET 4 AA5 4 GLU A 399 VAL A 400 -1 N GLU A 399 O TYR A 435 SHEET 1 AA6 4 THR A 364 VAL A 370 0 SHEET 2 AA6 4 THR A 354 ASP A 359 -1 N ASP A 359 O THR A 364 SHEET 3 AA6 4 GLY A 385 SER A 392 -1 O GLU A 390 N THR A 356 SHEET 4 AA6 4 SER A 417 VAL A 422 -1 O ILE A 420 N TYR A 387 LINK OD1 ASP A 18 CA CA A 515 1555 1555 2.28 LINK OD1 ASP A 20 CA CA A 515 1555 1555 2.32 LINK OG SER A 22 CA CA A 515 1555 1555 2.47 LINK O THR A 24 CA CA A 515 1555 1555 2.37 LINK OD1 ASP A 30 CA CA A 515 1555 1555 2.56 LINK OD2 ASP A 30 CA CA A 515 1555 1555 2.56 LINK O ASP A 42 CA CA A 512 1555 1555 2.42 LINK O VAL A 44 CA CA A 512 1555 1555 2.22 LINK O VAL A 103 CA CA A 512 1555 1555 2.55 LINK OD1 ASN A 331 CA CA A 516 1555 1555 2.30 LINK OD1 ASP A 336 CA CA A 513 1555 1555 2.27 LINK OD1 ASN A 338 CA CA A 513 1555 1555 2.46 LINK OD1 ASN A 340 CA CA A 513 1555 1555 2.48 LINK O VAL A 342 CA CA A 513 1555 1555 2.37 LINK OE1 GLU A 344 CA CA A 513 1555 1555 2.32 LINK OE1 GLU A 347 CA CA A 513 1555 1555 2.59 LINK OE2 GLU A 347 CA CA A 513 1555 1555 2.44 LINK O GLU A 409 CA CA A 514 1555 1555 2.31 LINK OD1 ASP A 412 CA CA A 514 1555 1555 2.44 LINK OD1 ASN A 414 CA CA A 514 1555 1555 2.35 LINK O LEU A 428 CA CA A 516 1555 1555 2.30 LINK O SER A 429 CA CA A 514 1555 1555 2.43 LINK OD1 ASP A 431 CA CA A 516 1555 1555 2.50 LINK OD2 ASP A 431 CA CA A 516 1555 1555 2.44 LINK O1 EDO A 511 CA CA A 516 1555 1555 2.53 LINK O2 EDO A 511 CA CA A 516 1555 1555 2.41 LINK CA CA A 512 O HOH A 633 1555 1555 2.45 LINK CA CA A 512 O HOH A 861 1555 1555 2.54 LINK CA CA A 512 O HOH A 865 1555 1555 2.34 LINK CA CA A 514 O HOH A 678 1555 1555 2.44 LINK CA CA A 514 O HOH A 694 1555 1555 2.47 LINK CA CA A 514 O HOH A 742 1555 1555 2.45 LINK CA CA A 515 O HOH A 712 1555 1555 2.47 LINK CA CA A 516 O HOH A 601 1555 1555 2.53 LINK CA CA A 516 O HOH A 708 1555 1555 2.38 CISPEP 1 GLY A 330 ASN A 331 0 5.02 CRYST1 43.054 72.825 148.453 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023227 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006736 0.00000