HEADER METAL BINDING PROTEIN 22-DEC-23 8VG3 TITLE FORMERLY DEGENERATE SEVENTH ZINC FINGER DOMAIN FROM TRANSCRIPTION TITLE 2 FACTOR ZNF711 REHABILITATED BY EXPERIMENTAL NMR STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 711; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS ZNF711, CMPX1, XLID97, DEGENERATE ZINC FINGER, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.J.RUA,A.T.ALEXANDRESCU REVDAT 2 15-MAY-24 8VG3 1 REMARK REVDAT 1 17-JAN-24 8VG3 0 JRNL AUTH A.J.RUA,A.T.ALEXANDRESCU JRNL TITL FORMERLY DEGENERATE SEVENTH ZINC FINGER DOMAIN FROM JRNL TITL 2 TRANSCRIPTION FACTOR ZNF711 REHABILITATED BY EXPERIMENTAL JRNL TITL 3 NMR STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NESG SCRIPT PROT_SA_REFINE.INP -> REMARK 3 OBTAINED FROM HERE: HTTPS://NESGWIKI.CHEM.BUFFALO.EDU/INDEX.PHP/ REMARK 3 STRUCTURE_REFINEMENT_USING_XPLOR-NIH REMARK 4 REMARK 4 8VG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000279410. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 298; 298 REMARK 210 PH : 6.2; 6.2; 6.2 REMARK 210 IONIC STRENGTH : 0; 0; 0 REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 2.4 MM Z711-7, 4.4 MM ZNSO4, REMARK 210 100% D2O; 2.4 MM Z711-7, 4.4 MM REMARK 210 ZNSO4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-15N SOFAST HMQC; 2D 1H-13C REMARK 210 HSQC; 2D 1H-1H DQF-COSY; DOSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA; AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS, X-PLOR NIH REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ACE A 0 REMARK 465 NH2 A 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 5 34.96 -77.08 REMARK 500 1 PRO A 7 36.92 -80.36 REMARK 500 1 HIS A 26 88.85 -26.80 REMARK 500 2 HIS A 5 36.55 -70.62 REMARK 500 2 PRO A 7 37.20 -77.05 REMARK 500 2 ASP A 12 -169.39 -118.05 REMARK 500 3 HIS A 5 34.54 -77.82 REMARK 500 3 PRO A 7 36.01 -82.97 REMARK 500 3 ARG A 14 -72.86 -54.83 REMARK 500 4 HIS A 5 33.39 -79.99 REMARK 500 4 PRO A 7 37.49 -83.59 REMARK 500 5 HIS A 5 -138.10 -54.57 REMARK 500 5 CYS A 6 169.36 -37.62 REMARK 500 5 PRO A 7 39.10 -67.41 REMARK 500 6 HIS A 5 -138.36 -54.28 REMARK 500 6 CYS A 6 157.32 -31.91 REMARK 500 6 PRO A 7 41.19 -63.28 REMARK 500 6 ARG A 14 -72.49 -56.73 REMARK 500 7 HIS A 5 -138.39 -56.11 REMARK 500 7 CYS A 6 166.93 -36.33 REMARK 500 7 PRO A 7 39.14 -65.83 REMARK 500 7 ARG A 14 -72.47 -49.38 REMARK 500 8 HIS A 5 35.10 -77.63 REMARK 500 8 PRO A 7 36.83 -82.92 REMARK 500 8 ARG A 14 -71.64 -54.44 REMARK 500 9 HIS A 5 34.18 -73.87 REMARK 500 9 PRO A 7 36.35 -79.11 REMARK 500 10 HIS A 5 33.82 -70.46 REMARK 500 10 PRO A 7 37.68 -82.73 REMARK 500 11 HIS A 5 34.67 -76.33 REMARK 500 11 PRO A 7 35.13 -72.45 REMARK 500 12 HIS A 5 37.92 -78.97 REMARK 500 12 PRO A 7 35.98 -82.24 REMARK 500 12 HIS A 26 -80.12 52.86 REMARK 500 13 HIS A 5 34.93 -74.86 REMARK 500 13 PRO A 7 35.88 -81.52 REMARK 500 13 ARG A 14 -70.32 -55.88 REMARK 500 14 HIS A 5 34.53 -76.64 REMARK 500 14 PRO A 7 37.36 -77.51 REMARK 500 14 ARG A 14 -71.27 -51.66 REMARK 500 14 HIS A 26 179.27 -45.88 REMARK 500 15 HIS A 5 33.57 -74.42 REMARK 500 15 PRO A 7 36.19 -83.39 REMARK 500 15 ASP A 12 -168.81 -121.82 REMARK 500 15 ARG A 14 -72.26 -55.77 REMARK 500 16 HIS A 5 35.07 -71.67 REMARK 500 16 PRO A 7 37.48 -83.90 REMARK 500 16 ARG A 14 -73.21 -42.54 REMARK 500 17 HIS A 5 33.92 -73.08 REMARK 500 17 PRO A 7 36.24 -80.32 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 3 SG REMARK 620 2 CYS A 6 SG 96.0 REMARK 620 3 HIS A 19 NE2 123.4 72.4 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 52210 RELATED DB: BMRB DBREF 8VG3 A 1 27 UNP Q9Y462 ZN711_HUMAN 562 588 SEQADV 8VG3 ACE A 0 UNP Q9Y462 ACETYLATION SEQADV 8VG3 NH2 A 28 UNP Q9Y462 AMIDATION SEQRES 1 A 29 ACE TYR LYS CYS GLU HIS CYS PRO GLN ALA PHE GLY ASP SEQRES 2 A 29 GLU ARG GLU LEU GLN ARG HIS LEU ASP LEU PHE GLN GLY SEQRES 3 A 29 HIS LYS NH2 HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 AA1 GLU A 13 HIS A 26 1 14 SHEET 1 AA1 2 LYS A 2 CYS A 3 0 SHEET 2 AA1 2 GLN A 8 ALA A 9 -1 O GLN A 8 N CYS A 3 LINK SG CYS A 3 ZN ZN A 101 1555 1555 2.31 LINK SG CYS A 6 ZN ZN A 101 1555 1555 2.30 LINK NE2 HIS A 19 ZN ZN A 101 1555 1555 2.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1