HEADER TRANSCRIPTION/DNA 01-JAN-24 8VHG TITLE STRUCTURE OF THE BMAL1/HIF2A HETERODIMER IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOTHELIAL PAS DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPAS-1,HIF-1-ALPHA-LIKE FACTOR,HLF,MHLF,HIF-RELATED FACTOR, COMPND 5 HRF,HYPOXIA-INDUCIBLE FACTOR 2-ALPHA,HIF-2-ALPHA,HIF2-ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BASIC HELIX-LOOP-HELIX ARNT-LIKE PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: ARNT3,ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR-LIKE COMPND 11 PROTEIN 1,BRAIN AND MUSCLE ARNT-LIKE 1; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REVERSE STRAND DNA CONTAINING HRE MOTIF; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: FORWARD STRAND DNA CONTAINING HRE MOTIF; COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EPAS1, HIF2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: BMAL1, ARNTL; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 19 ORGANISM_TAXID: 10090; SOURCE 20 MOL_ID: 4; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 24 ORGANISM_TAXID: 10090 KEYWDS TRANSCRIPTIONAL FACTORS, HETERODIMER, DNA RECOGNITION, CIRCADIAN- KEYWDS 2 DEPENDENT CARDIOPROTECTION, TRANSCRIPTION-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR T.LI,K.L.TSAI REVDAT 4 04-JUN-25 8VHG 1 JRNL REVDAT 3 07-MAY-25 8VHG 1 JRNL REVDAT 2 23-APR-25 8VHG 1 JRNL REVDAT 1 12-FEB-25 8VHG 0 JRNL AUTH W.RUAN,T.LI,I.H.BANG,J.LEE,W.DENG,X.MA,C.LUO,F.DU,S.H.YOO, JRNL AUTH 2 B.KIM,J.LI,X.YUAN,K.FIGARELLA,Y.A.AN,Y.Y.WANG,Y.LIANG, JRNL AUTH 3 M.DEBERGE,D.ZHANG,Z.ZHOU,Y.WANG,J.M.GORHAM,J.G.SEIDMAN, JRNL AUTH 4 C.E.SEIDMAN,S.F.ARANKI,R.NAIR,L.LI,J.NARULA,Z.ZHAO, JRNL AUTH 5 A.A.GORFE,J.D.MUEHLSCHLEGEL,K.L.TSAI,H.K.ELTZSCHIG JRNL TITL BMAL1-HIF2A HETERODIMER MODULATES CIRCADIAN VARIATIONS OF JRNL TITL 2 MYOCARDIAL INJURY. JRNL REF NATURE V. 641 1017 2025 JRNL REFN ESSN 1476-4687 JRNL PMID 40269168 JRNL DOI 10.1038/S41586-025-08898-Z REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.600 REMARK 3 NUMBER OF PARTICLES : 41991 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8VHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000280234. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX OF THE REMARK 245 BMAL1/HIF2A HETERODIMER BOUND REMARK 245 WITH DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 7500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 HIS A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLU A 76 REMARK 465 ASN A 77 REMARK 465 GLU A 78 REMARK 465 SER A 79 REMARK 465 GLU A 80 REMARK 465 ALA A 81 REMARK 465 GLU A 82 REMARK 465 ALA A 83 REMARK 465 ASP A 84 REMARK 465 GLN A 85 REMARK 465 GLN A 86 REMARK 465 MET A 87 REMARK 465 ASP A 88 REMARK 465 ASN A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 GLY A 154 REMARK 465 PHE A 155 REMARK 465 GLY A 156 REMARK 465 LYS A 157 REMARK 465 LYS A 158 REMARK 465 SER A 159 REMARK 465 LYS A 160 REMARK 465 ASP A 161 REMARK 465 VAL A 162 REMARK 465 SER A 163 REMARK 465 CYS A 174 REMARK 465 THR A 175 REMARK 465 VAL A 176 REMARK 465 THR A 177 REMARK 465 ASN A 178 REMARK 465 ARG A 179 REMARK 465 GLY A 180 REMARK 465 ARG A 181 REMARK 465 THR A 182 REMARK 465 VAL A 183 REMARK 465 ASN A 184 REMARK 465 LEU A 185 REMARK 465 VAL A 201 REMARK 465 TYR A 202 REMARK 465 ASN A 203 REMARK 465 ASN A 204 REMARK 465 CYS A 205 REMARK 465 PRO A 206 REMARK 465 PRO A 207 REMARK 465 HIS A 208 REMARK 465 SER A 209 REMARK 465 SER A 210 REMARK 465 LEU A 211 REMARK 465 CYS A 212 REMARK 465 GLY A 213 REMARK 465 SER A 214 REMARK 465 LYS A 215 REMARK 465 GLU A 216 REMARK 465 PRO A 217 REMARK 465 LEU A 218 REMARK 465 LEU A 219 REMARK 465 MET A 356 REMARK 465 ASP A 357 REMARK 465 GLN A 358 REMARK 465 THR A 359 REMARK 465 GLU A 360 REMARK 465 SER A 361 REMARK 465 GLY B 68 REMARK 465 ARG B 69 REMARK 465 ILE B 70 REMARK 465 LYS B 71 REMARK 465 ASN B 72 REMARK 465 ALA B 73 REMARK 465 ARG B 74 REMARK 465 CYS B 102 REMARK 465 ASN B 103 REMARK 465 ALA B 104 REMARK 465 MET B 105 REMARK 465 SER B 106 REMARK 465 ARG B 107 REMARK 465 LYS B 108 REMARK 465 LEU B 109 REMARK 465 ASP B 110 REMARK 465 ARG B 126 REMARK 465 GLY B 127 REMARK 465 ALA B 128 REMARK 465 THR B 129 REMARK 465 ASN B 130 REMARK 465 PRO B 131 REMARK 465 TYR B 132 REMARK 465 THR B 133 REMARK 465 GLU B 134 REMARK 465 ALA B 135 REMARK 465 ASN B 136 REMARK 465 TYR B 137 REMARK 465 LYS B 138 REMARK 465 PRO B 139 REMARK 465 THR B 140 REMARK 465 PHE B 141 REMARK 465 LEU B 142 REMARK 465 SER B 143 REMARK 465 ASP B 144 REMARK 465 CYS B 164 REMARK 465 ASP B 165 REMARK 465 ARG B 166 REMARK 465 GLY B 167 REMARK 465 SER B 210 REMARK 465 SER B 211 REMARK 465 ASP B 212 REMARK 465 THR B 213 REMARK 465 ALA B 214 REMARK 465 PRO B 215 REMARK 465 ARG B 216 REMARK 465 GLU B 217 REMARK 465 ARG B 218 REMARK 465 LEU B 219 REMARK 465 ILE B 220 REMARK 465 ASP B 221 REMARK 465 ALA B 222 REMARK 465 LYS B 223 REMARK 465 THR B 224 REMARK 465 GLY B 225 REMARK 465 LEU B 226 REMARK 465 PRO B 227 REMARK 465 VAL B 228 REMARK 465 LYS B 229 REMARK 465 THR B 230 REMARK 465 ASP B 231 REMARK 465 ILE B 232 REMARK 465 THR B 233 REMARK 465 PRO B 234 REMARK 465 GLY B 235 REMARK 465 PRO B 236 REMARK 465 SER B 237 REMARK 465 ARG B 238 REMARK 465 LEU B 239 REMARK 465 CYS B 240 REMARK 465 SER B 241 REMARK 465 GLY B 242 REMARK 465 ASN B 254 REMARK 465 ARG B 255 REMARK 465 PRO B 256 REMARK 465 SER B 257 REMARK 465 VAL B 258 REMARK 465 LYS B 259 REMARK 465 VAL B 260 REMARK 465 GLU B 261 REMARK 465 ASP B 262 REMARK 465 LYS B 263 REMARK 465 ASP B 264 REMARK 465 PHE B 265 REMARK 465 ALA B 266 REMARK 465 SER B 267 REMARK 465 THR B 268 REMARK 465 CYS B 269 REMARK 465 SER B 270 REMARK 465 LYS B 271 REMARK 465 LYS B 272 REMARK 465 LYS B 273 REMARK 465 ALA B 274 REMARK 465 ASP B 275 REMARK 465 ARG B 276 REMARK 465 LYS B 277 REMARK 465 SER B 278 REMARK 465 PHE B 279 REMARK 465 TRP B 291 REMARK 465 PRO B 292 REMARK 465 PRO B 293 REMARK 465 THR B 294 REMARK 465 LYS B 295 REMARK 465 MET B 296 REMARK 465 GLY B 297 REMARK 465 LEU B 298 REMARK 465 ASP B 299 REMARK 465 GLU B 300 REMARK 465 ASP B 301 REMARK 465 ASN B 302 REMARK 465 GLU B 303 REMARK 465 PRO B 304 REMARK 465 ASP B 305 REMARK 465 ASN B 306 REMARK 465 GLU B 307 REMARK 465 GLY B 308 REMARK 465 CYS B 309 REMARK 465 ASN B 310 REMARK 465 LEU B 311 REMARK 465 HIS B 321 REMARK 465 SER B 322 REMARK 465 HIS B 323 REMARK 465 MET B 324 REMARK 465 VAL B 325 REMARK 465 PRO B 326 REMARK 465 GLN B 327 REMARK 465 PRO B 328 REMARK 465 ALA B 329 REMARK 465 ASN B 330 REMARK 465 GLY B 331 REMARK 465 GLU B 332 REMARK 465 ILE B 333 REMARK 465 ARG B 334 REMARK 465 VAL B 335 REMARK 465 LYS B 336 REMARK 465 SER B 337 REMARK 465 ALA B 345 REMARK 465 ILE B 346 REMARK 465 ASP B 347 REMARK 465 GLY B 348 REMARK 465 LYS B 349 REMARK 465 LYS B 407 REMARK 465 ILE B 408 REMARK 465 LYS B 409 REMARK 465 ASP B 410 REMARK 465 GLY B 411 REMARK 465 SER B 412 REMARK 465 VAL B 441 REMARK 465 LEU B 442 REMARK 465 ALA B 443 REMARK 465 ASN B 444 REMARK 465 VAL B 445 REMARK 465 LEU B 446 REMARK 465 GLU B 447 REMARK 465 GLY B 448 REMARK 465 GLY B 449 REMARK 465 ASP B 450 REMARK 465 PRO B 451 REMARK 465 THR B 452 REMARK 465 PHE B 453 REMARK 465 PRO B 454 REMARK 465 GLN B 455 REMARK 465 LEU B 456 REMARK 465 THR B 457 REMARK 465 ALA B 458 REMARK 465 PRO B 459 REMARK 465 PRO B 460 REMARK 465 HIS B 461 REMARK 465 SER B 462 REMARK 465 MET B 463 REMARK 465 ASP B 464 REMARK 465 SER B 465 REMARK 465 MET B 466 REMARK 465 LEU B 467 REMARK 465 PRO B 468 REMARK 465 SER B 469 REMARK 465 GLY B 470 REMARK 465 GLU B 471 REMARK 465 GLY B 472 REMARK 465 GLY B 473 REMARK 465 PRO B 474 REMARK 465 LYS B 475 REMARK 465 ARG B 476 REMARK 465 THR B 477 REMARK 465 HIS B 478 REMARK 465 PRO B 479 REMARK 465 THR B 480 REMARK 465 VAL B 481 REMARK 465 PRO B 482 REMARK 465 GLY B 483 REMARK 465 ILE B 484 REMARK 465 PRO B 485 REMARK 465 GLY B 486 REMARK 465 GLY B 487 REMARK 465 THR B 488 REMARK 465 GLU B 489 REMARK 465 ASN B 490 REMARK 465 LEU B 491 REMARK 465 TYR B 492 REMARK 465 PHE B 493 REMARK 465 GLN B 494 REMARK 465 SER B 495 REMARK 465 ASP B 496 REMARK 465 TYR B 497 REMARK 465 LYS B 498 REMARK 465 ASP B 499 REMARK 465 ASP B 500 REMARK 465 ASP B 501 REMARK 465 ASP B 502 REMARK 465 LYS B 503 REMARK 465 DC C 0 REMARK 465 DA C 1 REMARK 465 DC C 2 REMARK 465 DT C 21 REMARK 465 DC C 22 REMARK 465 DC C 23 REMARK 465 DG D 0 REMARK 465 DG D 1 REMARK 465 DA D 2 REMARK 465 DG D 21 REMARK 465 DT D 22 REMARK 465 DG D 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 CYS A 74 SG REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 CYS A 226 SG REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 MET A 235 CG SD CE REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 VAL A 325 CG1 CG2 REMARK 470 GLN A 333 CG CD OE1 NE2 REMARK 470 ASN A 350 CG OD1 ND2 REMARK 470 VAL A 353 CG1 CG2 REMARK 470 ASP B 86 CG OD1 OD2 REMARK 470 SER B 97 OG REMARK 470 THR B 113 OG1 CG2 REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 158 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 162 CG1 CG2 REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 LEU B 180 CG CD1 CD2 REMARK 470 TYR B 182 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 183 OG REMARK 470 ASP B 194 CG OD1 OD2 REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 ASP B 200 CG OD1 OD2 REMARK 470 GLU B 206 CG CD OE1 OE2 REMARK 470 LEU B 208 CG CD1 CD2 REMARK 470 MET B 251 CG SD CE REMARK 470 CYS B 313 SG REMARK 470 VAL B 353 CG1 CG2 REMARK 470 ASP B 354 CG OD1 OD2 REMARK 470 GLN B 355 CG CD OE1 NE2 REMARK 470 ILE B 360 CG1 CG2 CD1 REMARK 470 TYR B 363 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 364 CG CD1 CD2 REMARK 470 GLN B 366 CG CD OE1 NE2 REMARK 470 GLU B 367 CG CD OE1 OE2 REMARK 470 HIS B 378 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 379 CG CD OE1 NE2 REMARK 470 ILE B 382 CG1 CG2 CD1 REMARK 470 CYS B 388 SG REMARK 470 HIS B 389 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 393 CG CD1 CD2 REMARK 470 GLN B 394 CG CD OE1 NE2 REMARK 470 THR B 395 OG1 CG2 REMARK 470 GLU B 397 CG CD OE1 OE2 REMARK 470 ILE B 399 CG1 CG2 CD1 REMARK 470 THR B 400 OG1 CG2 REMARK 470 CYS B 403 SG REMARK 470 TYR B 404 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 405 CG CD CE NZ REMARK 470 ILE B 414 CG1 CG2 CD1 REMARK 470 GLU B 432 CG CD OE1 OE2 REMARK 470 SER B 436 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 12 O5' - P - OP2 ANGL. DEV. = -6.7 DEGREES REMARK 500 DT D 9 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 68 -60.48 -95.05 REMARK 500 CYS A 74 -53.31 -123.09 REMARK 500 ASP A 107 111.27 -160.44 REMARK 500 ILE A 109 -61.54 -104.56 REMARK 500 PHE A 168 -168.52 -166.52 REMARK 500 PRO A 232 1.32 -63.97 REMARK 500 THR A 255 -30.97 -130.66 REMARK 500 LEU A 273 -155.70 -149.53 REMARK 500 GLU A 279 -31.84 -130.96 REMARK 500 ALA A 283 -119.06 56.81 REMARK 500 ASP B 156 -156.80 54.00 REMARK 500 SER B 175 79.93 -116.39 REMARK 500 SER B 183 -167.54 -76.73 REMARK 500 GLN B 355 -60.43 -99.37 REMARK 500 PRO B 365 2.42 -66.68 REMARK 500 ARG B 396 -172.98 59.16 REMARK 500 GLU B 397 -123.75 58.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-43237 RELATED DB: EMDB REMARK 900 STRUCTURE OF THE BMAL1/HIF2A HETERODIMER IN COMPLEX WITH DNA DBREF 8VHG A 3 361 UNP P97481 EPAS1_MOUSE 3 361 DBREF 8VHG B 68 488 UNP Q9WTL8 BMAL1_MOUSE 75 494 DBREF 8VHG C 0 23 PDB 8VHG 8VHG 0 23 DBREF 8VHG D 0 23 PDB 8VHG 8VHG 0 23 SEQADV 8VHG MET A -18 UNP P97481 EXPRESSION TAG SEQADV 8VHG GLY A -17 UNP P97481 EXPRESSION TAG SEQADV 8VHG SER A -16 UNP P97481 EXPRESSION TAG SEQADV 8VHG SER A -15 UNP P97481 EXPRESSION TAG SEQADV 8VHG HIS A -14 UNP P97481 EXPRESSION TAG SEQADV 8VHG HIS A -13 UNP P97481 EXPRESSION TAG SEQADV 8VHG HIS A -12 UNP P97481 EXPRESSION TAG SEQADV 8VHG HIS A -11 UNP P97481 EXPRESSION TAG SEQADV 8VHG HIS A -10 UNP P97481 EXPRESSION TAG SEQADV 8VHG HIS A -9 UNP P97481 EXPRESSION TAG SEQADV 8VHG SER A -8 UNP P97481 EXPRESSION TAG SEQADV 8VHG SER A -7 UNP P97481 EXPRESSION TAG SEQADV 8VHG GLY A -6 UNP P97481 EXPRESSION TAG SEQADV 8VHG LEU A -5 UNP P97481 EXPRESSION TAG SEQADV 8VHG VAL A -4 UNP P97481 EXPRESSION TAG SEQADV 8VHG PRO A -3 UNP P97481 EXPRESSION TAG SEQADV 8VHG ARG A -2 UNP P97481 EXPRESSION TAG SEQADV 8VHG GLY A -1 UNP P97481 EXPRESSION TAG SEQADV 8VHG SER A 0 UNP P97481 EXPRESSION TAG SEQADV 8VHG HIS A 1 UNP P97481 EXPRESSION TAG SEQADV 8VHG MET A 2 UNP P97481 EXPRESSION TAG SEQADV 8VHG ALA B 274 UNP Q9WTL8 INSERTION SEQADV 8VHG GLU B 489 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG ASN B 490 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG LEU B 491 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG TYR B 492 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG PHE B 493 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG GLN B 494 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG SER B 495 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG ASP B 496 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG TYR B 497 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG LYS B 498 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG ASP B 499 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG ASP B 500 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG ASP B 501 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG ASP B 502 UNP Q9WTL8 EXPRESSION TAG SEQADV 8VHG LYS B 503 UNP Q9WTL8 EXPRESSION TAG SEQRES 1 A 380 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 380 LEU VAL PRO ARG GLY SER HIS MET ALA ASP LYS GLU LYS SEQRES 3 A 380 LYS ARG SER SER SER GLU LEU ARG LYS GLU LYS SER ARG SEQRES 4 A 380 ASP ALA ALA ARG CYS ARG ARG SER LYS GLU THR GLU VAL SEQRES 5 A 380 PHE TYR GLU LEU ALA HIS GLU LEU PRO LEU PRO HIS SER SEQRES 6 A 380 VAL SER SER HIS LEU ASP LYS ALA SER ILE MET ARG LEU SEQRES 7 A 380 ALA ILE SER PHE LEU ARG THR HIS LYS LEU LEU SER SER SEQRES 8 A 380 VAL CYS SER GLU ASN GLU SER GLU ALA GLU ALA ASP GLN SEQRES 9 A 380 GLN MET ASP ASN LEU TYR LEU LYS ALA LEU GLU GLY PHE SEQRES 10 A 380 ILE ALA VAL VAL THR GLN ASP GLY ASP MET ILE PHE LEU SEQRES 11 A 380 SER GLU ASN ILE SER LYS PHE MET GLY LEU THR GLN VAL SEQRES 12 A 380 GLU LEU THR GLY HIS SER ILE PHE ASP PHE THR HIS PRO SEQRES 13 A 380 CYS ASP HIS GLU GLU ILE ARG GLU ASN LEU THR LEU LYS SEQRES 14 A 380 ASN GLY SER GLY PHE GLY LYS LYS SER LYS ASP VAL SER SEQRES 15 A 380 THR GLU ARG ASP PHE PHE MET ARG MET LYS CYS THR VAL SEQRES 16 A 380 THR ASN ARG GLY ARG THR VAL ASN LEU LYS SER ALA THR SEQRES 17 A 380 TRP LYS VAL LEU HIS CYS THR GLY GLN VAL ARG VAL TYR SEQRES 18 A 380 ASN ASN CYS PRO PRO HIS SER SER LEU CYS GLY SER LYS SEQRES 19 A 380 GLU PRO LEU LEU SER CYS LEU ILE ILE MET CYS GLU PRO SEQRES 20 A 380 ILE GLN HIS PRO SER HIS MET ASP ILE PRO LEU ASP SER SEQRES 21 A 380 LYS THR PHE LEU SER ARG HIS SER MET ASP MET LYS PHE SEQRES 22 A 380 THR TYR CYS ASP ASP ARG ILE LEU GLU LEU ILE GLY TYR SEQRES 23 A 380 HIS PRO GLU GLU LEU LEU GLY ARG SER ALA TYR GLU PHE SEQRES 24 A 380 TYR HIS ALA LEU ASP SER GLU ASN MET THR LYS SER HIS SEQRES 25 A 380 GLN ASN LEU CYS THR LYS GLY GLN VAL VAL SER GLY GLN SEQRES 26 A 380 TYR ARG MET LEU ALA LYS HIS GLY GLY TYR VAL TRP LEU SEQRES 27 A 380 GLU THR GLN GLY THR VAL ILE TYR ASN PRO ARG ASN LEU SEQRES 28 A 380 GLN PRO GLN CYS ILE MET CYS VAL ASN TYR VAL LEU SER SEQRES 29 A 380 GLU ILE GLU LYS ASN ASP VAL VAL PHE SER MET ASP GLN SEQRES 30 A 380 THR GLU SER SEQRES 1 B 436 GLY ARG ILE LYS ASN ALA ARG GLU ALA HIS SER GLN ILE SEQRES 2 B 436 GLU LYS ARG ARG ARG ASP LYS MET ASN SER PHE ILE ASP SEQRES 3 B 436 GLU LEU ALA SER LEU VAL PRO THR CYS ASN ALA MET SER SEQRES 4 B 436 ARG LYS LEU ASP LYS LEU THR VAL LEU ARG MET ALA VAL SEQRES 5 B 436 GLN HIS MET LYS THR LEU ARG GLY ALA THR ASN PRO TYR SEQRES 6 B 436 THR GLU ALA ASN TYR LYS PRO THR PHE LEU SER ASP ASP SEQRES 7 B 436 GLU LEU LYS HIS LEU ILE LEU ARG ALA ALA ASP GLY PHE SEQRES 8 B 436 LEU PHE VAL VAL GLY CYS ASP ARG GLY LYS ILE LEU PHE SEQRES 9 B 436 VAL SER GLU SER VAL PHE LYS ILE LEU ASN TYR SER GLN SEQRES 10 B 436 ASN ASP LEU ILE GLY GLN SER LEU PHE ASP TYR LEU HIS SEQRES 11 B 436 PRO LYS ASP ILE ALA LYS VAL LYS GLU GLN LEU SER SER SEQRES 12 B 436 SER ASP THR ALA PRO ARG GLU ARG LEU ILE ASP ALA LYS SEQRES 13 B 436 THR GLY LEU PRO VAL LYS THR ASP ILE THR PRO GLY PRO SEQRES 14 B 436 SER ARG LEU CYS SER GLY ALA ARG ARG SER PHE PHE CYS SEQRES 15 B 436 ARG MET LYS CYS ASN ARG PRO SER VAL LYS VAL GLU ASP SEQRES 16 B 436 LYS ASP PHE ALA SER THR CYS SER LYS LYS LYS ALA ASP SEQRES 17 B 436 ARG LYS SER PHE CYS THR ILE HIS SER THR GLY TYR LEU SEQRES 18 B 436 LYS SER TRP PRO PRO THR LYS MET GLY LEU ASP GLU ASP SEQRES 19 B 436 ASN GLU PRO ASP ASN GLU GLY CYS ASN LEU SER CYS LEU SEQRES 20 B 436 VAL ALA ILE GLY ARG LEU HIS SER HIS MET VAL PRO GLN SEQRES 21 B 436 PRO ALA ASN GLY GLU ILE ARG VAL LYS SER MET GLU TYR SEQRES 22 B 436 VAL SER ARG HIS ALA ILE ASP GLY LYS PHE VAL PHE VAL SEQRES 23 B 436 ASP GLN ARG ALA THR ALA ILE LEU ALA TYR LEU PRO GLN SEQRES 24 B 436 GLU LEU LEU GLY THR SER CYS TYR GLU TYR PHE HIS GLN SEQRES 25 B 436 ASP ASP ILE GLY HIS LEU ALA GLU CYS HIS ARG GLN VAL SEQRES 26 B 436 LEU GLN THR ARG GLU LYS ILE THR THR ASN CYS TYR LYS SEQRES 27 B 436 PHE LYS ILE LYS ASP GLY SER PHE ILE THR LEU ARG SER SEQRES 28 B 436 ARG TRP PHE SER PHE MET ASN PRO TRP THR LYS GLU VAL SEQRES 29 B 436 GLU TYR ILE VAL SER THR ASN THR VAL VAL LEU ALA ASN SEQRES 30 B 436 VAL LEU GLU GLY GLY ASP PRO THR PHE PRO GLN LEU THR SEQRES 31 B 436 ALA PRO PRO HIS SER MET ASP SER MET LEU PRO SER GLY SEQRES 32 B 436 GLU GLY GLY PRO LYS ARG THR HIS PRO THR VAL PRO GLY SEQRES 33 B 436 ILE PRO GLY GLY THR GLU ASN LEU TYR PHE GLN SER ASP SEQRES 34 B 436 TYR LYS ASP ASP ASP ASP LYS SEQRES 1 C 24 DC DA DC DG DA DC DC DC DG DC DA DC DG SEQRES 2 C 24 DT DA DC DG DC DA DG DC DT DC DC SEQRES 1 D 24 DG DG DA DG DC DT DG DC DG DT DA DC DG SEQRES 2 D 24 DT DG DC DG DG DG DT DC DG DT DG HELIX 1 AA1 LEU A 14 GLU A 40 1 27 HELIX 2 AA2 ASP A 52 LEU A 69 1 18 HELIX 3 AA3 GLU A 113 PHE A 118 5 6 HELIX 4 AA4 GLN A 123 THR A 127 5 5 HELIX 5 AA5 SER A 130 PHE A 134 5 5 HELIX 6 AA6 HIS A 140 THR A 148 1 9 HELIX 7 AA7 ARG A 260 ILE A 265 1 6 HELIX 8 AA8 ALA A 283 LYS A 299 1 17 HELIX 9 AA9 HIS B 77 VAL B 99 1 23 HELIX 10 AB1 LEU B 112 THR B 124 1 13 HELIX 11 AB2 LEU B 147 ALA B 155 1 9 HELIX 12 AB3 LEU B 192 LEU B 196 5 5 HELIX 13 AB4 HIS B 197 GLN B 207 1 11 HELIX 14 AB5 ARG B 356 LEU B 361 1 6 HELIX 15 AB6 SER B 372 PHE B 377 1 6 HELIX 16 AB7 ASP B 381 GLN B 394 1 14 SHEET 1 AA1 5 MET A 108 LEU A 111 0 SHEET 2 AA1 5 PHE A 98 THR A 103 -1 N VAL A 101 O ILE A 109 SHEET 3 AA1 5 CYS A 221 CYS A 226 -1 O ILE A 224 N ALA A 100 SHEET 4 AA1 5 HIS A 194 VAL A 199 -1 N THR A 196 O MET A 225 SHEET 5 AA1 5 PHE A 168 PHE A 169 -1 N PHE A 168 O CYS A 195 SHEET 1 AA2 5 PHE A 254 CYS A 257 0 SHEET 2 AA2 5 LEU A 245 HIS A 248 -1 N ARG A 247 O TYR A 256 SHEET 3 AA2 5 ILE A 337 VAL A 340 -1 O ILE A 337 N HIS A 248 SHEET 4 AA2 5 GLN A 322 VAL A 325 -1 N THR A 324 O MET A 338 SHEET 5 AA2 5 VAL A 302 VAL A 303 -1 N VAL A 302 O GLY A 323 SHEET 1 AA3 2 TYR A 307 LEU A 310 0 SHEET 2 AA3 2 TYR A 316 LEU A 319 -1 O LEU A 319 N TYR A 307 SHEET 1 AA4 5 PHE B 171 VAL B 172 0 SHEET 2 AA4 5 LEU B 159 VAL B 162 -1 N VAL B 161 O PHE B 171 SHEET 3 AA4 5 CYS B 313 ARG B 319 -1 O LEU B 314 N VAL B 162 SHEET 4 AA4 5 HIS B 283 LYS B 289 -1 N TYR B 287 O VAL B 315 SHEET 5 AA4 5 ARG B 245 PHE B 247 -1 N PHE B 247 O SER B 284 SHEET 1 AA5 2 TRP B 420 MET B 424 0 SHEET 2 AA5 2 VAL B 431 SER B 436 -1 O TYR B 433 N PHE B 423 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 2272 SER A 355 TER 3983 VAL B 440 TER 4350 DC C 20 TER 4723 DC D 20 MASTER 539 0 0 16 19 0 0 6 4719 4 0 68 END