data_8VIU # _entry.id 8VIU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VIU pdb_00008viu 10.2210/pdb8viu/pdb WWPDB D_1000280258 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-10-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VIU _pdbx_database_status.recvd_initial_deposition_date 2024-01-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 8V4T unspecified PDB . 8V5J unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email wdw@gsu.edu _pdbx_contact_author.name_first W _pdbx_contact_author.name_last Wilson _pdbx_contact_author.name_mi David _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5225-5089 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Terrell, J.R.' 1 0000-0001-5394-5663 'Wilson, W.D.' 2 0000-0001-5225-5089 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural Examination of DNA Minor Groove Binding by Diamidine Stacked Dimers' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Terrell, J.R.' 1 0000-0001-5394-5663 primary 'Paul, A.' 2 ? primary 'Ogbonna, E.N.' 3 ? primary 'Farahat, A.A.' 4 ? primary 'Wilson, W.D.' 5 0000-0001-5225-5089 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*CP*GP*TP*TP*AP*AP*CP*GP*CP*AP*GP*C)-3') ; 4899.179 1 ? ? ? ? 2 non-polymer syn '(2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide' 350.398 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 7 ? ? ? ? 4 water nat water 18.015 69 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DT)(DG)(DC)(DG)(DT)(DT)(DA)(DA)(DC)(DG)(DC)(DA)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCTGCGTTAACGCAGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide' A1AB3 3 'CALCIUM ION' CA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DT n 1 8 DT n 1 9 DA n 1 10 DA n 1 11 DC n 1 12 DG n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1AB3 non-polymer . '(2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide' ? 'C17 H14 N6 O S' 350.398 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DC 13 13 13 DC DC A . n A 1 14 DA 14 14 14 DA DA A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DC 16 16 16 DC DC A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 A1AB3 ? ? A1AB3 ? ? 'SUBJECT OF INVESTIGATION' ? 2 CA ? ? CA ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AB3 1 101 101 A1AB3 992 A . C 3 CA 1 102 8 CA CA A . D 3 CA 1 103 9 CA CA A . E 3 CA 1 104 10 CA CA A . F 3 CA 1 105 11 CA CA A . G 3 CA 1 106 12 CA CA A . H 3 CA 1 107 13 CA CA A . I 3 CA 1 108 14 CA CA A . J 4 HOH 1 201 43 HOH HOH A . J 4 HOH 2 202 59 HOH HOH A . J 4 HOH 3 203 29 HOH HOH A . J 4 HOH 4 204 27 HOH HOH A . J 4 HOH 5 205 60 HOH HOH A . J 4 HOH 6 206 30 HOH HOH A . J 4 HOH 7 207 5 HOH HOH A . J 4 HOH 8 208 40 HOH HOH A . J 4 HOH 9 209 32 HOH HOH A . J 4 HOH 10 210 69 HOH HOH A . J 4 HOH 11 211 33 HOH HOH A . J 4 HOH 12 212 22 HOH HOH A . J 4 HOH 13 213 13 HOH HOH A . J 4 HOH 14 214 54 HOH HOH A . J 4 HOH 15 215 16 HOH HOH A . J 4 HOH 16 216 25 HOH HOH A . J 4 HOH 17 217 14 HOH HOH A . J 4 HOH 18 218 17 HOH HOH A . J 4 HOH 19 219 57 HOH HOH A . J 4 HOH 20 220 2 HOH HOH A . J 4 HOH 21 221 44 HOH HOH A . J 4 HOH 22 222 19 HOH HOH A . J 4 HOH 23 223 15 HOH HOH A . J 4 HOH 24 224 67 HOH HOH A . J 4 HOH 25 225 50 HOH HOH A . J 4 HOH 26 226 9 HOH HOH A . J 4 HOH 27 227 10 HOH HOH A . J 4 HOH 28 228 49 HOH HOH A . J 4 HOH 29 229 38 HOH HOH A . J 4 HOH 30 230 1 HOH HOH A . J 4 HOH 31 231 65 HOH HOH A . J 4 HOH 32 232 11 HOH HOH A . J 4 HOH 33 233 61 HOH HOH A . J 4 HOH 34 234 31 HOH HOH A . J 4 HOH 35 235 7 HOH HOH A . J 4 HOH 36 236 21 HOH HOH A . J 4 HOH 37 237 23 HOH HOH A . J 4 HOH 38 238 64 HOH HOH A . J 4 HOH 39 239 37 HOH HOH A . J 4 HOH 40 240 68 HOH HOH A . J 4 HOH 41 241 41 HOH HOH A . J 4 HOH 42 242 42 HOH HOH A . J 4 HOH 43 243 63 HOH HOH A . J 4 HOH 44 244 24 HOH HOH A . J 4 HOH 45 245 52 HOH HOH A . J 4 HOH 46 246 20 HOH HOH A . J 4 HOH 47 247 3 HOH HOH A . J 4 HOH 48 248 6 HOH HOH A . J 4 HOH 49 249 8 HOH HOH A . J 4 HOH 50 250 45 HOH HOH A . J 4 HOH 51 251 46 HOH HOH A . J 4 HOH 52 252 26 HOH HOH A . J 4 HOH 53 253 39 HOH HOH A . J 4 HOH 54 254 4 HOH HOH A . J 4 HOH 55 255 36 HOH HOH A . J 4 HOH 56 256 47 HOH HOH A . J 4 HOH 57 257 28 HOH HOH A . J 4 HOH 58 258 51 HOH HOH A . J 4 HOH 59 259 62 HOH HOH A . J 4 HOH 60 260 58 HOH HOH A . J 4 HOH 61 261 12 HOH HOH A . J 4 HOH 62 262 56 HOH HOH A . J 4 HOH 63 263 66 HOH HOH A . J 4 HOH 64 264 55 HOH HOH A . J 4 HOH 65 265 48 HOH HOH A . J 4 HOH 66 266 18 HOH HOH A . J 4 HOH 67 267 35 HOH HOH A . J 4 HOH 68 268 34 HOH HOH A . J 4 HOH 69 269 53 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8VIU _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.345 _cell.length_a_esd ? _cell.length_b 38.345 _cell.length_b_esd ? _cell.length_c 162.141 _cell.length_c_esd ? _cell.volume 206462.396 _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ;R 3 2" ; _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VIU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10mM HEPES, pH=8.6, 600mM CaCl2, 41% PEG200 mixed 1:1 with 1mM DNA duplex' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 295 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-10-15 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Horizontal DCM' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979340 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979340 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 16.94 _reflns.entry_id 8VIU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.49 _reflns.d_resolution_low 32.53 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7906 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.28 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.8 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.13 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.05887 _reflns.pdbx_Rpim_I_all 0.01832 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.05583 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.49 _reflns_shell.d_res_low 1.543 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.18 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 775 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 10.9 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.5799 _reflns_shell.pdbx_Rpim_I_all 0.1751 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.947 _reflns_shell.pdbx_CC_star 0.986 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.87 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.5523 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 25.04 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8VIU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.49 _refine.ls_d_res_low 32.53 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7864 _refine.ls_number_reflns_R_free 784 _refine.ls_number_reflns_R_work 7080 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.32 _refine.ls_percent_reflns_R_free 9.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2273 _refine.ls_R_factor_R_free 0.2492 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2245 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.6407 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1554 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.49 _refine_hist.d_res_low 32.53 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 426 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 325 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0199 ? 392 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.7471 ? 601 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0852 ? 63 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0190 ? 22 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 32.2557 ? 178 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.49 1.58 . . 130 1162 99.61 . . . . 0.2412 . . . . . . . . . . . 0.2530 'X-RAY DIFFRACTION' 1.58 1.71 . . 124 1129 97.89 . . . . 0.2413 . . . . . . . . . . . 0.2237 'X-RAY DIFFRACTION' 1.71 1.88 . . 126 1153 98.92 . . . . 0.2269 . . . . . . . . . . . 0.2400 'X-RAY DIFFRACTION' 1.88 2.15 . . 131 1179 99.92 . . . . 0.2407 . . . . . . . . . . . 0.2959 'X-RAY DIFFRACTION' 2.15 2.71 . . 132 1187 100.00 . . . . 0.2449 . . . . . . . . . . . 0.2633 'X-RAY DIFFRACTION' 2.71 32.53 . . 141 1270 99.51 . . . . 0.2071 . . . . . . . . . . . 0.2360 # _struct.entry_id 8VIU _struct.title ;The DNA 16-mer sequence 5'-GCTGCGTTAACGCAGC-3' bound by a DB1992 stacked dimer ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VIU _struct_keywords.text 'DNA duplex, DNA, 16-mer, self-complementary, diamidine, minor-groove binder' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8VIU _struct_ref.pdbx_db_accession 8VIU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8VIU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8VIU _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3370 ? 1 MORE -33 ? 1 'SSA (A^2)' 5660 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 17_435 x-y-2/3,-y-4/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -44.2769921442 0.0000000000 0.0000000000 -1.0000000000 108.0940000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 2 OP1 ? ? ? 1_555 C CA . CA ? ? A DC 2 A CA 102 1_555 ? ? ? ? ? ? ? 2.356 ? ? metalc2 metalc ? ? A DC 2 OP1 ? ? ? 1_555 C CA . CA ? ? A DC 2 A CA 102 2_455 ? ? ? ? ? ? ? 2.356 ? ? metalc3 metalc ? ? A DG 6 OP1 ? ? ? 1_555 E CA . CA ? ? A DG 6 A CA 104 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc4 metalc ? ? A DG 6 OP1 ? ? ? 1_555 E CA . CA ? ? A DG 6 A CA 104 3_545 ? ? ? ? ? ? ? 2.374 ? ? metalc5 metalc ? ? A DG 6 OP2 ? ? ? 1_555 F CA . CA ? ? A DG 6 A CA 105 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc6 metalc ? ? A DG 6 OP2 ? ? ? 1_555 F CA . CA ? ? A DG 6 A CA 105 2_445 ? ? ? ? ? ? ? 2.340 ? ? metalc7 metalc ? ? A DG 15 OP1 ? ? ? 1_555 D CA . CA ? ? A DG 15 A CA 103 18_445 ? ? ? ? ? ? ? 2.334 ? ? metalc8 metalc ? ? A DC 16 OP1 ? ? ? 1_555 H CA . CA ? ? A DC 16 A CA 107 1_555 ? ? ? ? ? ? ? 2.328 ? ? metalc9 metalc ? ? A DC 16 OP1 ? ? ? 1_555 H CA . CA ? ? A DC 16 A CA 107 2_445 ? ? ? ? ? ? ? 2.327 ? ? metalc10 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 235 1_555 ? ? ? ? ? ? ? 2.422 ? ? metalc11 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 235 2_455 ? ? ? ? ? ? ? 2.422 ? ? metalc12 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 207 1_555 ? ? ? ? ? ? ? 2.222 ? ? metalc13 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 230 17_435 ? ? ? ? ? ? ? 2.261 ? ? metalc14 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 247 18_445 ? ? ? ? ? ? ? 2.505 ? ? metalc15 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 257 18_445 ? ? ? ? ? ? ? 2.574 ? ? metalc16 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 261 18_445 ? ? ? ? ? ? ? 2.420 ? ? metalc17 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 248 1_555 ? ? ? ? ? ? ? 2.455 ? ? metalc18 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 248 2_445 ? ? ? ? ? ? ? 2.438 ? ? metalc19 metalc ? ? F CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 254 1_555 ? ? ? ? ? ? ? 2.368 ? ? metalc20 metalc ? ? F CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 254 2_445 ? ? ? ? ? ? ? 2.368 ? ? metalc21 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 106 A HOH 237 1_555 ? ? ? ? ? ? ? 2.406 ? ? metalc22 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 106 A HOH 242 1_555 ? ? ? ? ? ? ? 2.671 ? ? metalc23 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 106 A HOH 258 2_445 ? ? ? ? ? ? ? 2.431 ? ? metalc24 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 106 A HOH 260 17_435 ? ? ? ? ? ? ? 2.306 ? ? metalc25 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 106 A HOH 266 17_435 ? ? ? ? ? ? ? 2.617 ? ? metalc26 metalc ? ? H CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 107 A HOH 220 15_434 ? ? ? ? ? ? ? 2.394 ? ? metalc27 metalc ? ? I CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 108 A HOH 214 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc28 metalc ? ? I CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 108 A HOH 221 2_445 ? ? ? ? ? ? ? 2.329 ? ? metalc29 metalc ? ? I CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 108 A HOH 223 2_445 ? ? ? ? ? ? ? 2.236 ? ? metalc30 metalc ? ? I CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 108 A HOH 252 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc31 metalc ? ? I CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 108 A HOH 263 16_545 ? ? ? ? ? ? ? 2.410 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 16 N3 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 16 O2 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 16 N4 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 15 N1 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 15 O6 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 15 N2 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 14 N1 ? ? A DT 3 A DA 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 14 N6 ? ? A DT 3 A DA 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 12 N1 ? ? A DC 5 A DG 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 12 O6 ? ? A DC 5 A DG 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 12 N2 ? ? A DC 5 A DG 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 11 N3 ? ? A DG 6 A DC 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 11 O2 ? ? A DG 6 A DC 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 11 N4 ? ? A DG 6 A DC 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 10 N1 ? ? A DT 7 A DA 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 10 N6 ? ? A DT 7 A DA 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 9 N1 ? ? A DT 8 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 9 N6 ? ? A DT 8 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 9 A DT 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 9 A DT 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 10 A DT 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 10 A DT 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 11 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 11 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 11 A DG 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 12 A DC 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 12 A DC 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 12 A DC 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 13 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 13 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DA 14 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 14 A DT 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 14 A DT 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 16 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 16 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 OP1 ? A DC 2 ? A DC 2 ? 1_555 0.0 ? 2 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 235 ? 1_555 84.1 ? 3 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 235 ? 1_555 84.1 ? 4 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 235 ? 2_455 95.8 ? 5 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 235 ? 2_455 95.8 ? 6 O ? J HOH . ? A HOH 235 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 235 ? 2_455 86.5 ? 7 OP1 ? A DG 6 ? A DG 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 OP1 ? A DG 6 ? A DG 6 ? 1_555 0.0 ? 8 OP1 ? A DG 6 ? A DG 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 248 ? 1_555 95.7 ? 9 OP1 ? A DG 6 ? A DG 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 248 ? 1_555 95.7 ? 10 OP1 ? A DG 6 ? A DG 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 248 ? 2_445 87.4 ? 11 OP1 ? A DG 6 ? A DG 6 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 248 ? 2_445 87.4 ? 12 O ? J HOH . ? A HOH 248 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 248 ? 2_445 89.9 ? 13 OP2 ? A DG 6 ? A DG 6 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 OP2 ? A DG 6 ? A DG 6 ? 1_555 0.0 ? 14 OP2 ? A DG 6 ? A DG 6 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 254 ? 1_555 89.7 ? 15 OP2 ? A DG 6 ? A DG 6 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 254 ? 1_555 89.7 ? 16 OP2 ? A DG 6 ? A DG 6 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 254 ? 2_445 90.0 ? 17 OP2 ? A DG 6 ? A DG 6 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 254 ? 2_445 90.0 ? 18 O ? J HOH . ? A HOH 254 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 254 ? 2_445 85.0 ? 19 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 207 ? 1_555 71.2 ? 20 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 230 ? 17_435 72.3 ? 21 O ? J HOH . ? A HOH 207 ? 1_555 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 230 ? 17_435 3.3 ? 22 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 247 ? 18_445 75.6 ? 23 O ? J HOH . ? A HOH 207 ? 1_555 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 247 ? 18_445 4.5 ? 24 O ? J HOH . ? A HOH 230 ? 17_435 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 247 ? 18_445 4.6 ? 25 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 257 ? 18_445 74.8 ? 26 O ? J HOH . ? A HOH 207 ? 1_555 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 257 ? 18_445 4.1 ? 27 O ? J HOH . ? A HOH 230 ? 17_435 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 257 ? 18_445 2.9 ? 28 O ? J HOH . ? A HOH 247 ? 18_445 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 257 ? 18_445 2.0 ? 29 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 261 ? 18_445 76.6 ? 30 O ? J HOH . ? A HOH 207 ? 1_555 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 261 ? 18_445 5.9 ? 31 O ? J HOH . ? A HOH 230 ? 17_435 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 261 ? 18_445 4.5 ? 32 O ? J HOH . ? A HOH 247 ? 18_445 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 261 ? 18_445 2.5 ? 33 O ? J HOH . ? A HOH 257 ? 18_445 CA ? D CA . ? A CA 103 ? 18_445 O ? J HOH . ? A HOH 261 ? 18_445 1.8 ? 34 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 OP1 ? A DC 16 ? A DC 16 ? 1_555 0.0 ? 35 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? J HOH . ? A HOH 220 ? 15_434 87.8 ? 36 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? H CA . ? A CA 107 ? 1_555 O ? J HOH . ? A HOH 220 ? 15_434 87.8 ? 37 O ? J HOH . ? A HOH 237 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 242 ? 1_555 81.8 ? 38 O ? J HOH . ? A HOH 237 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 258 ? 2_445 78.4 ? 39 O ? J HOH . ? A HOH 242 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 258 ? 2_445 98.8 ? 40 O ? J HOH . ? A HOH 237 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 260 ? 17_435 79.1 ? 41 O ? J HOH . ? A HOH 242 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 260 ? 17_435 160.7 ? 42 O ? J HOH . ? A HOH 258 ? 2_445 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 260 ? 17_435 80.7 ? 43 O ? J HOH . ? A HOH 237 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 266 ? 17_435 125.5 ? 44 O ? J HOH . ? A HOH 242 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 266 ? 17_435 66.4 ? 45 O ? J HOH . ? A HOH 258 ? 2_445 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 266 ? 17_435 146.4 ? 46 O ? J HOH . ? A HOH 260 ? 17_435 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 266 ? 17_435 123.3 ? 47 O ? J HOH . ? A HOH 214 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? J HOH . ? A HOH 221 ? 2_445 111.0 ? 48 O ? J HOH . ? A HOH 214 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? J HOH . ? A HOH 223 ? 2_445 69.9 ? 49 O ? J HOH . ? A HOH 221 ? 2_445 CA ? I CA . ? A CA 108 ? 1_555 O ? J HOH . ? A HOH 223 ? 2_445 77.7 ? 50 O ? J HOH . ? A HOH 214 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? J HOH . ? A HOH 252 ? 1_555 135.6 ? 51 O ? J HOH . ? A HOH 221 ? 2_445 CA ? I CA . ? A CA 108 ? 1_555 O ? J HOH . ? A HOH 252 ? 1_555 81.9 ? 52 O ? J HOH . ? A HOH 223 ? 2_445 CA ? I CA . ? A CA 108 ? 1_555 O ? J HOH . ? A HOH 252 ? 1_555 152.6 ? 53 O ? J HOH . ? A HOH 214 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? J HOH . ? A HOH 263 ? 16_545 105.4 ? 54 O ? J HOH . ? A HOH 221 ? 2_445 CA ? I CA . ? A CA 108 ? 1_555 O ? J HOH . ? A HOH 263 ? 16_545 132.6 ? 55 O ? J HOH . ? A HOH 223 ? 2_445 CA ? I CA . ? A CA 108 ? 1_555 O ? J HOH . ? A HOH 263 ? 16_545 87.7 ? 56 O ? J HOH . ? A HOH 252 ? 1_555 CA ? I CA . ? A CA 108 ? 1_555 O ? J HOH . ? A HOH 263 ? 16_545 92.8 ? # _pdbx_entry_details.entry_id 8VIU _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 4 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N1 A DC 5 ? ? C6 A DC 5 ? ? 1.330 1.367 -0.037 0.006 N 2 1 "O3'" A DA 10 ? ? "C3'" A DA 10 ? ? 1.382 1.419 -0.037 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.94 108.30 2.64 0.30 N 2 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 102.55 108.00 -5.45 0.70 N 3 1 N3 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 125.06 119.90 5.16 0.60 N 4 1 C5 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 119.51 124.90 -5.39 0.70 N 5 1 "O4'" A DA 10 ? ? "C1'" A DA 10 ? ? N9 A DA 10 ? ? 110.36 108.30 2.06 0.30 N 6 1 "C3'" A DC 13 ? ? "C2'" A DC 13 ? ? "C1'" A DC 13 ? ? 97.18 102.40 -5.22 0.80 N 7 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.85 108.30 3.55 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 102 ? C CA . 2 1 A CA 104 ? E CA . 3 1 A CA 105 ? F CA . 4 1 A CA 107 ? H CA . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x-y,-y,-z 5 -x,-x+y,-z 6 y,x,-z 7 x+1/3,y+2/3,z+2/3 8 -y+1/3,x-y+2/3,z+2/3 9 -x+y+1/3,-x+2/3,z+2/3 10 x-y+1/3,-y+2/3,-z+2/3 11 -x+1/3,-x+y+2/3,-z+2/3 12 y+1/3,x+2/3,-z+2/3 13 x+2/3,y+1/3,z+1/3 14 -y+2/3,x-y+1/3,z+1/3 15 -x+y+2/3,-x+1/3,z+1/3 16 x-y+2/3,-y+1/3,-z+1/3 17 -x+2/3,-x+y+1/3,-z+1/3 18 y+2/3,x+1/3,-z+1/3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1AB3 C6 C Y N 1 A1AB3 C5 C Y N 2 A1AB3 C4 C Y N 3 A1AB3 C3 C Y N 4 A1AB3 C2 C Y N 5 A1AB3 C1 C N N 6 A1AB3 C7 C Y N 7 A1AB3 C10 C Y N 8 A1AB3 C11 C Y N 9 A1AB3 C12 C Y N 10 A1AB3 C13 C Y N 11 A1AB3 C14 C Y N 12 A1AB3 C8 C Y N 13 A1AB3 C9 C Y N 14 A1AB3 C15 C N N 15 A1AB3 C16 C Y N 16 A1AB3 C17 C Y N 17 A1AB3 N1 N N N 18 A1AB3 N2 N N N 19 A1AB3 N3 N Y N 20 A1AB3 N4 N N N 21 A1AB3 N5 N N N 22 A1AB3 N6 N Y N 23 A1AB3 O1 O Y N 24 A1AB3 S1 S Y N 25 A1AB3 H6 H N N 26 A1AB3 H5 H N N 27 A1AB3 H9 H N N 28 A1AB3 H10 H N N 29 A1AB3 H7 H N N 30 A1AB3 H8 H N N 31 A1AB3 H16 H N N 32 A1AB3 H2 H N N 33 A1AB3 H1 H N N 34 A1AB3 H4 H N N 35 A1AB3 H12 H N N 36 A1AB3 H11 H N N 37 A1AB3 H13 H N N 38 A1AB3 H15 H N N 39 CA CA CA N N 40 DA OP3 O N N 41 DA P P N N 42 DA OP1 O N N 43 DA OP2 O N N 44 DA "O5'" O N N 45 DA "C5'" C N N 46 DA "C4'" C N R 47 DA "O4'" O N N 48 DA "C3'" C N S 49 DA "O3'" O N N 50 DA "C2'" C N N 51 DA "C1'" C N R 52 DA N9 N Y N 53 DA C8 C Y N 54 DA N7 N Y N 55 DA C5 C Y N 56 DA C6 C Y N 57 DA N6 N N N 58 DA N1 N Y N 59 DA C2 C Y N 60 DA N3 N Y N 61 DA C4 C Y N 62 DA HOP3 H N N 63 DA HOP2 H N N 64 DA "H5'" H N N 65 DA "H5''" H N N 66 DA "H4'" H N N 67 DA "H3'" H N N 68 DA "HO3'" H N N 69 DA "H2'" H N N 70 DA "H2''" H N N 71 DA "H1'" H N N 72 DA H8 H N N 73 DA H61 H N N 74 DA H62 H N N 75 DA H2 H N N 76 DC OP3 O N N 77 DC P P N N 78 DC OP1 O N N 79 DC OP2 O N N 80 DC "O5'" O N N 81 DC "C5'" C N N 82 DC "C4'" C N R 83 DC "O4'" O N N 84 DC "C3'" C N S 85 DC "O3'" O N N 86 DC "C2'" C N N 87 DC "C1'" C N R 88 DC N1 N N N 89 DC C2 C N N 90 DC O2 O N N 91 DC N3 N N N 92 DC C4 C N N 93 DC N4 N N N 94 DC C5 C N N 95 DC C6 C N N 96 DC HOP3 H N N 97 DC HOP2 H N N 98 DC "H5'" H N N 99 DC "H5''" H N N 100 DC "H4'" H N N 101 DC "H3'" H N N 102 DC "HO3'" H N N 103 DC "H2'" H N N 104 DC "H2''" H N N 105 DC "H1'" H N N 106 DC H41 H N N 107 DC H42 H N N 108 DC H5 H N N 109 DC H6 H N N 110 DG OP3 O N N 111 DG P P N N 112 DG OP1 O N N 113 DG OP2 O N N 114 DG "O5'" O N N 115 DG "C5'" C N N 116 DG "C4'" C N R 117 DG "O4'" O N N 118 DG "C3'" C N S 119 DG "O3'" O N N 120 DG "C2'" C N N 121 DG "C1'" C N R 122 DG N9 N Y N 123 DG C8 C Y N 124 DG N7 N Y N 125 DG C5 C Y N 126 DG C6 C N N 127 DG O6 O N N 128 DG N1 N N N 129 DG C2 C N N 130 DG N2 N N N 131 DG N3 N N N 132 DG C4 C Y N 133 DG HOP3 H N N 134 DG HOP2 H N N 135 DG "H5'" H N N 136 DG "H5''" H N N 137 DG "H4'" H N N 138 DG "H3'" H N N 139 DG "HO3'" H N N 140 DG "H2'" H N N 141 DG "H2''" H N N 142 DG "H1'" H N N 143 DG H8 H N N 144 DG H1 H N N 145 DG H21 H N N 146 DG H22 H N N 147 DT OP3 O N N 148 DT P P N N 149 DT OP1 O N N 150 DT OP2 O N N 151 DT "O5'" O N N 152 DT "C5'" C N N 153 DT "C4'" C N R 154 DT "O4'" O N N 155 DT "C3'" C N S 156 DT "O3'" O N N 157 DT "C2'" C N N 158 DT "C1'" C N R 159 DT N1 N N N 160 DT C2 C N N 161 DT O2 O N N 162 DT N3 N N N 163 DT C4 C N N 164 DT O4 O N N 165 DT C5 C N N 166 DT C7 C N N 167 DT C6 C N N 168 DT HOP3 H N N 169 DT HOP2 H N N 170 DT "H5'" H N N 171 DT "H5''" H N N 172 DT "H4'" H N N 173 DT "H3'" H N N 174 DT "HO3'" H N N 175 DT "H2'" H N N 176 DT "H2''" H N N 177 DT "H1'" H N N 178 DT H3 H N N 179 DT H71 H N N 180 DT H72 H N N 181 DT H73 H N N 182 DT H6 H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AB3 N1 C1 sing N N 1 A1AB3 C1 N2 doub N N 2 A1AB3 C1 C2 sing N N 3 A1AB3 C2 C3 doub Y N 4 A1AB3 C3 C4 sing Y N 5 A1AB3 C4 C5 doub Y N 6 A1AB3 C5 N3 sing Y N 7 A1AB3 N3 C6 doub Y N 8 A1AB3 C6 C7 sing N N 9 A1AB3 C7 C8 doub Y N 10 A1AB3 C8 C9 sing Y N 11 A1AB3 C9 C10 doub Y N 12 A1AB3 C10 C11 sing N N 13 A1AB3 C11 C12 doub Y N 14 A1AB3 C12 C13 sing Y N 15 A1AB3 C13 C14 doub Y N 16 A1AB3 C14 C15 sing N N 17 A1AB3 C15 N4 sing N N 18 A1AB3 C15 N5 doub N N 19 A1AB3 C14 S1 sing Y N 20 A1AB3 C10 O1 sing Y N 21 A1AB3 C6 N6 sing Y N 22 A1AB3 N6 C16 sing Y N 23 A1AB3 C16 C17 doub Y N 24 A1AB3 C2 C17 sing Y N 25 A1AB3 C5 C16 sing Y N 26 A1AB3 C7 O1 sing Y N 27 A1AB3 C11 S1 sing Y N 28 A1AB3 C4 H6 sing N N 29 A1AB3 C3 H5 sing N N 30 A1AB3 C12 H9 sing N N 31 A1AB3 C13 H10 sing N N 32 A1AB3 C8 H7 sing N N 33 A1AB3 C9 H8 sing N N 34 A1AB3 C17 H16 sing N N 35 A1AB3 N1 H2 sing N N 36 A1AB3 N1 H1 sing N N 37 A1AB3 N2 H4 sing N N 38 A1AB3 N4 H12 sing N N 39 A1AB3 N4 H11 sing N N 40 A1AB3 N5 H13 sing N N 41 A1AB3 N6 H15 sing N N 42 DA OP3 P sing N N 43 DA OP3 HOP3 sing N N 44 DA P OP1 doub N N 45 DA P OP2 sing N N 46 DA P "O5'" sing N N 47 DA OP2 HOP2 sing N N 48 DA "O5'" "C5'" sing N N 49 DA "C5'" "C4'" sing N N 50 DA "C5'" "H5'" sing N N 51 DA "C5'" "H5''" sing N N 52 DA "C4'" "O4'" sing N N 53 DA "C4'" "C3'" sing N N 54 DA "C4'" "H4'" sing N N 55 DA "O4'" "C1'" sing N N 56 DA "C3'" "O3'" sing N N 57 DA "C3'" "C2'" sing N N 58 DA "C3'" "H3'" sing N N 59 DA "O3'" "HO3'" sing N N 60 DA "C2'" "C1'" sing N N 61 DA "C2'" "H2'" sing N N 62 DA "C2'" "H2''" sing N N 63 DA "C1'" N9 sing N N 64 DA "C1'" "H1'" sing N N 65 DA N9 C8 sing Y N 66 DA N9 C4 sing Y N 67 DA C8 N7 doub Y N 68 DA C8 H8 sing N N 69 DA N7 C5 sing Y N 70 DA C5 C6 sing Y N 71 DA C5 C4 doub Y N 72 DA C6 N6 sing N N 73 DA C6 N1 doub Y N 74 DA N6 H61 sing N N 75 DA N6 H62 sing N N 76 DA N1 C2 sing Y N 77 DA C2 N3 doub Y N 78 DA C2 H2 sing N N 79 DA N3 C4 sing Y N 80 DC OP3 P sing N N 81 DC OP3 HOP3 sing N N 82 DC P OP1 doub N N 83 DC P OP2 sing N N 84 DC P "O5'" sing N N 85 DC OP2 HOP2 sing N N 86 DC "O5'" "C5'" sing N N 87 DC "C5'" "C4'" sing N N 88 DC "C5'" "H5'" sing N N 89 DC "C5'" "H5''" sing N N 90 DC "C4'" "O4'" sing N N 91 DC "C4'" "C3'" sing N N 92 DC "C4'" "H4'" sing N N 93 DC "O4'" "C1'" sing N N 94 DC "C3'" "O3'" sing N N 95 DC "C3'" "C2'" sing N N 96 DC "C3'" "H3'" sing N N 97 DC "O3'" "HO3'" sing N N 98 DC "C2'" "C1'" sing N N 99 DC "C2'" "H2'" sing N N 100 DC "C2'" "H2''" sing N N 101 DC "C1'" N1 sing N N 102 DC "C1'" "H1'" sing N N 103 DC N1 C2 sing N N 104 DC N1 C6 sing N N 105 DC C2 O2 doub N N 106 DC C2 N3 sing N N 107 DC N3 C4 doub N N 108 DC C4 N4 sing N N 109 DC C4 C5 sing N N 110 DC N4 H41 sing N N 111 DC N4 H42 sing N N 112 DC C5 C6 doub N N 113 DC C5 H5 sing N N 114 DC C6 H6 sing N N 115 DG OP3 P sing N N 116 DG OP3 HOP3 sing N N 117 DG P OP1 doub N N 118 DG P OP2 sing N N 119 DG P "O5'" sing N N 120 DG OP2 HOP2 sing N N 121 DG "O5'" "C5'" sing N N 122 DG "C5'" "C4'" sing N N 123 DG "C5'" "H5'" sing N N 124 DG "C5'" "H5''" sing N N 125 DG "C4'" "O4'" sing N N 126 DG "C4'" "C3'" sing N N 127 DG "C4'" "H4'" sing N N 128 DG "O4'" "C1'" sing N N 129 DG "C3'" "O3'" sing N N 130 DG "C3'" "C2'" sing N N 131 DG "C3'" "H3'" sing N N 132 DG "O3'" "HO3'" sing N N 133 DG "C2'" "C1'" sing N N 134 DG "C2'" "H2'" sing N N 135 DG "C2'" "H2''" sing N N 136 DG "C1'" N9 sing N N 137 DG "C1'" "H1'" sing N N 138 DG N9 C8 sing Y N 139 DG N9 C4 sing Y N 140 DG C8 N7 doub Y N 141 DG C8 H8 sing N N 142 DG N7 C5 sing Y N 143 DG C5 C6 sing N N 144 DG C5 C4 doub Y N 145 DG C6 O6 doub N N 146 DG C6 N1 sing N N 147 DG N1 C2 sing N N 148 DG N1 H1 sing N N 149 DG C2 N2 sing N N 150 DG C2 N3 doub N N 151 DG N2 H21 sing N N 152 DG N2 H22 sing N N 153 DG N3 C4 sing N N 154 DT OP3 P sing N N 155 DT OP3 HOP3 sing N N 156 DT P OP1 doub N N 157 DT P OP2 sing N N 158 DT P "O5'" sing N N 159 DT OP2 HOP2 sing N N 160 DT "O5'" "C5'" sing N N 161 DT "C5'" "C4'" sing N N 162 DT "C5'" "H5'" sing N N 163 DT "C5'" "H5''" sing N N 164 DT "C4'" "O4'" sing N N 165 DT "C4'" "C3'" sing N N 166 DT "C4'" "H4'" sing N N 167 DT "O4'" "C1'" sing N N 168 DT "C3'" "O3'" sing N N 169 DT "C3'" "C2'" sing N N 170 DT "C3'" "H3'" sing N N 171 DT "O3'" "HO3'" sing N N 172 DT "C2'" "C1'" sing N N 173 DT "C2'" "H2'" sing N N 174 DT "C2'" "H2''" sing N N 175 DT "C1'" N1 sing N N 176 DT "C1'" "H1'" sing N N 177 DT N1 C2 sing N N 178 DT N1 C6 sing N N 179 DT C2 O2 doub N N 180 DT C2 N3 sing N N 181 DT N3 C4 sing N N 182 DT N3 H3 sing N N 183 DT C4 O4 doub N N 184 DT C4 C5 sing N N 185 DT C5 C7 sing N N 186 DT C5 C6 doub N N 187 DT C7 H71 sing N N 188 DT C7 H72 sing N N 189 DT C7 H73 sing N N 190 DT C6 H6 sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 # _ndb_struct_conf_na.entry_id 8VIU _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 16 17_435 -0.214 -0.140 -0.104 0.274 -8.846 0.241 1 A_DG1:DC16_A A 1 ? A 16 ? 19 1 1 A DC 2 1_555 A DG 15 17_435 0.168 -0.143 0.382 -7.975 -14.827 -2.204 2 A_DC2:DG15_A A 2 ? A 15 ? 19 1 1 A DT 3 1_555 A DA 14 17_435 -0.058 -0.081 0.052 -5.506 -16.779 0.885 3 A_DT3:DA14_A A 3 ? A 14 ? 20 1 1 A DG 4 1_555 A DC 13 17_435 -0.146 -0.134 -0.288 -12.412 -6.082 -2.710 4 A_DG4:DC13_A A 4 ? A 13 ? 19 1 1 A DC 5 1_555 A DG 12 17_435 0.326 -0.088 0.007 -0.536 -2.451 0.933 5 A_DC5:DG12_A A 5 ? A 12 ? 19 1 1 A DG 6 1_555 A DC 11 17_435 0.073 -0.093 0.240 -6.081 -16.194 -1.333 6 A_DG6:DC11_A A 6 ? A 11 ? 19 1 1 A DT 7 1_555 A DA 10 17_435 -0.301 -0.166 0.317 -12.417 -11.984 -1.861 7 A_DT7:DA10_A A 7 ? A 10 ? 20 1 1 A DT 8 1_555 A DA 9 17_435 -0.186 -0.163 -0.095 -7.389 -10.267 0.201 8 A_DT8:DA9_A A 8 ? A 9 ? 20 1 1 A DA 9 1_555 A DT 8 17_435 0.186 -0.163 -0.095 7.389 -10.267 0.201 9 A_DA9:DT8_A A 9 ? A 8 ? 20 1 1 A DA 10 1_555 A DT 7 17_435 0.301 -0.166 0.317 12.417 -11.984 -1.861 10 A_DA10:DT7_A A 10 ? A 7 ? 20 1 1 A DC 11 1_555 A DG 6 17_435 -0.073 -0.093 0.240 6.081 -16.194 -1.333 11 A_DC11:DG6_A A 11 ? A 6 ? 19 1 1 A DG 12 1_555 A DC 5 17_435 -0.326 -0.088 0.007 0.536 -2.451 0.933 12 A_DG12:DC5_A A 12 ? A 5 ? 19 1 1 A DC 13 1_555 A DG 4 17_435 0.146 -0.134 -0.288 12.412 -6.082 -2.710 13 A_DC13:DG4_A A 13 ? A 4 ? 19 1 1 A DA 14 1_555 A DT 3 17_435 0.058 -0.081 0.052 5.506 -16.779 0.885 14 A_DA14:DT3_A A 14 ? A 3 ? 20 1 1 A DG 15 1_555 A DC 2 17_435 -0.168 -0.143 0.382 7.975 -14.827 -2.204 15 A_DG15:DC2_A A 15 ? A 2 ? 19 1 1 A DC 16 1_555 A DG 1 17_435 0.214 -0.140 -0.104 -0.274 -8.846 0.241 16 A_DC16:DG1_A A 16 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 16 17_435 A DC 2 1_555 A DG 15 17_435 -1.074 -0.463 3.402 -5.471 -2.164 34.768 -0.422 0.905 3.546 -3.590 9.076 35.247 1 AA_DG1DC2:DG15DC16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A DC 2 1_555 A DG 15 17_435 A DT 3 1_555 A DA 14 17_435 -0.541 -0.128 3.248 2.724 6.537 28.322 -1.652 1.656 3.077 13.103 -5.461 29.176 2 AA_DC2DT3:DA14DG15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A DT 3 1_555 A DA 14 17_435 A DG 4 1_555 A DC 13 17_435 0.317 1.001 3.562 1.784 4.529 42.974 0.869 -0.237 3.654 6.158 -2.425 43.236 3 AA_DT3DG4:DC13DA14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A DG 4 1_555 A DC 13 17_435 A DC 5 1_555 A DG 12 17_435 0.311 -0.055 3.059 -2.115 5.883 23.663 -1.831 -1.345 2.921 14.034 5.046 24.464 4 AA_DG4DC5:DG12DC13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A DC 5 1_555 A DG 12 17_435 A DG 6 1_555 A DC 11 17_435 -1.280 0.893 3.510 -6.118 0.456 40.590 1.219 1.091 3.666 0.653 8.758 41.032 5 AA_DC5DG6:DC11DG12_AA A 5 ? A 12 ? A 6 ? A 11 ? 1 A DG 6 1_555 A DC 11 17_435 A DT 7 1_555 A DA 10 17_435 0.267 0.308 3.508 -0.481 -1.831 34.413 0.825 -0.530 3.484 -3.093 0.812 34.464 6 AA_DG6DT7:DA10DC11_AA A 6 ? A 11 ? A 7 ? A 10 ? 1 A DT 7 1_555 A DA 10 17_435 A DT 8 1_555 A DA 9 17_435 0.234 0.300 3.279 3.210 5.682 30.533 -0.538 0.184 3.287 10.637 -6.010 31.207 7 AA_DT7DT8:DA9DA10_AA A 7 ? A 10 ? A 8 ? A 9 ? 1 A DT 8 1_555 A DA 9 17_435 A DA 9 1_555 A DT 8 17_435 0.000 1.377 3.130 0.000 -0.653 37.791 2.206 0.000 3.107 -1.009 0.000 37.796 8 AA_DT8DA9:DT8DA9_AA A 8 ? A 9 ? A 9 ? A 8 ? 1 A DA 9 1_555 A DT 8 17_435 A DA 10 1_555 A DT 7 17_435 -0.234 0.300 3.279 -3.210 5.682 30.533 -0.538 -0.184 3.287 10.637 6.010 31.207 9 AA_DA9DA10:DT7DT8_AA A 9 ? A 8 ? A 10 ? A 7 ? 1 A DA 10 1_555 A DT 7 17_435 A DC 11 1_555 A DG 6 17_435 -0.267 0.308 3.508 0.481 -1.831 34.413 0.825 0.530 3.484 -3.093 -0.812 34.464 10 AA_DA10DC11:DG6DT7_AA A 10 ? A 7 ? A 11 ? A 6 ? 1 A DC 11 1_555 A DG 6 17_435 A DG 12 1_555 A DC 5 17_435 1.280 0.893 3.510 6.118 0.456 40.590 1.219 -1.091 3.666 0.653 -8.758 41.032 11 AA_DC11DG12:DC5DG6_AA A 11 ? A 6 ? A 12 ? A 5 ? 1 A DG 12 1_555 A DC 5 17_435 A DC 13 1_555 A DG 4 17_435 -0.311 -0.055 3.059 2.115 5.883 23.663 -1.831 1.345 2.921 14.034 -5.046 24.464 12 AA_DG12DC13:DG4DC5_AA A 12 ? A 5 ? A 13 ? A 4 ? 1 A DC 13 1_555 A DG 4 17_435 A DA 14 1_555 A DT 3 17_435 -0.317 1.001 3.562 -1.784 4.529 42.974 0.869 0.237 3.654 6.158 2.425 43.236 13 AA_DC13DA14:DT3DG4_AA A 13 ? A 4 ? A 14 ? A 3 ? 1 A DA 14 1_555 A DT 3 17_435 A DG 15 1_555 A DC 2 17_435 0.541 -0.128 3.248 -2.724 6.537 28.322 -1.652 -1.656 3.077 13.103 5.461 29.176 14 AA_DA14DG15:DC2DT3_AA A 14 ? A 3 ? A 15 ? A 2 ? 1 A DG 15 1_555 A DC 2 17_435 A DC 16 1_555 A DG 1 17_435 1.074 -0.463 3.402 5.471 -2.164 34.768 -0.422 -0.905 3.546 -3.590 -9.076 35.247 15 AA_DG15DC16:DG1DC2_AA A 15 ? A 2 ? A 16 ? A 1 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM111749 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8V4T _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'R 3 2 :H' _space_group.name_Hall ;R 3 2" ; _space_group.IT_number 155 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 8VIU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.026079 _atom_sites.fract_transf_matrix[1][2] 0.015057 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030113 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006167 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_