data_8VJA # _entry.id 8VJA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.396 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VJA pdb_00008vja 10.2210/pdb8vja/pdb WWPDB D_1000280385 ? ? EMDB EMD-43278 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-10-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VJA _pdbx_database_status.recvd_initial_deposition_date 2024-01-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM of tail of bacteriophage Chi' _pdbx_database_related.db_id EMD-43278 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email ravi123sonani@gmail.com _pdbx_contact_author.name_first Ravi _pdbx_contact_author.name_last Sonani _pdbx_contact_author.name_mi R _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6212-2869 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sonani, R.R.' 1 ? 'Esteves, N.C.' 2 ? 'Scharf, B.E.' 3 ? 'Egelman, E.H.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 32 _citation.language ? _citation.page_first 856 _citation.page_last 865.e3 _citation.title 'Cryo-EM structure of flagellotropic bacteriophage Chi.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2024.03.011 _citation.pdbx_database_id_PubMed 38614087 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sonani, R.R.' 1 ? primary 'Esteves, N.C.' 2 ? primary 'Scharf, B.E.' 3 ? primary 'Egelman, E.H.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Tail Tube' _entity.formula_weight 40375.363 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNDNYQNNYVVGRGTVYFDRFQDGTNRKTGEMYFGNTPEFTINTDSETLDHYSSDHGMRVMDASVLLEASQGGTFTCDNI NADNLALWFLGEVSNTTQTQQTDAKEVFNPIMRGRYYQLGTTDDNPTGVRGVTNFQMVKADASIAISVGSGDITSIVGAT VVNPAGNYEIDLEAGRIYIEPDSTDLSGNVQIAVQYDVDAQKRTLVIGKSNMVYGALRMISDNPVGLNKNYYFPKVSIAP DGDYALKGDDWQVMSFTFKAMQLNNITQRVYIDIVEAAAAVDPTAQRTIEITPASTTATTGGAGVVCTVTVRDGTGTAVQ GDAVTFTTVAGATVTPNSATTGATGTATTTVNRAAAGTATVTATLANGKAATTGTITFSAP ; _entity_poly.pdbx_seq_one_letter_code_can ;MNDNYQNNYVVGRGTVYFDRFQDGTNRKTGEMYFGNTPEFTINTDSETLDHYSSDHGMRVMDASVLLEASQGGTFTCDNI NADNLALWFLGEVSNTTQTQQTDAKEVFNPIMRGRYYQLGTTDDNPTGVRGVTNFQMVKADASIAISVGSGDITSIVGAT VVNPAGNYEIDLEAGRIYIEPDSTDLSGNVQIAVQYDVDAQKRTLVIGKSNMVYGALRMISDNPVGLNKNYYFPKVSIAP DGDYALKGDDWQVMSFTFKAMQLNNITQRVYIDIVEAAAAVDPTAQRTIEITPASTTATTGGAGVVCTVTVRDGTGTAVQ GDAVTFTTVAGATVTPNSATTGATGTATTTVNRAAAGTATVTATLANGKAATTGTITFSAP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 ASP n 1 4 ASN n 1 5 TYR n 1 6 GLN n 1 7 ASN n 1 8 ASN n 1 9 TYR n 1 10 VAL n 1 11 VAL n 1 12 GLY n 1 13 ARG n 1 14 GLY n 1 15 THR n 1 16 VAL n 1 17 TYR n 1 18 PHE n 1 19 ASP n 1 20 ARG n 1 21 PHE n 1 22 GLN n 1 23 ASP n 1 24 GLY n 1 25 THR n 1 26 ASN n 1 27 ARG n 1 28 LYS n 1 29 THR n 1 30 GLY n 1 31 GLU n 1 32 MET n 1 33 TYR n 1 34 PHE n 1 35 GLY n 1 36 ASN n 1 37 THR n 1 38 PRO n 1 39 GLU n 1 40 PHE n 1 41 THR n 1 42 ILE n 1 43 ASN n 1 44 THR n 1 45 ASP n 1 46 SER n 1 47 GLU n 1 48 THR n 1 49 LEU n 1 50 ASP n 1 51 HIS n 1 52 TYR n 1 53 SER n 1 54 SER n 1 55 ASP n 1 56 HIS n 1 57 GLY n 1 58 MET n 1 59 ARG n 1 60 VAL n 1 61 MET n 1 62 ASP n 1 63 ALA n 1 64 SER n 1 65 VAL n 1 66 LEU n 1 67 LEU n 1 68 GLU n 1 69 ALA n 1 70 SER n 1 71 GLN n 1 72 GLY n 1 73 GLY n 1 74 THR n 1 75 PHE n 1 76 THR n 1 77 CYS n 1 78 ASP n 1 79 ASN n 1 80 ILE n 1 81 ASN n 1 82 ALA n 1 83 ASP n 1 84 ASN n 1 85 LEU n 1 86 ALA n 1 87 LEU n 1 88 TRP n 1 89 PHE n 1 90 LEU n 1 91 GLY n 1 92 GLU n 1 93 VAL n 1 94 SER n 1 95 ASN n 1 96 THR n 1 97 THR n 1 98 GLN n 1 99 THR n 1 100 GLN n 1 101 GLN n 1 102 THR n 1 103 ASP n 1 104 ALA n 1 105 LYS n 1 106 GLU n 1 107 VAL n 1 108 PHE n 1 109 ASN n 1 110 PRO n 1 111 ILE n 1 112 MET n 1 113 ARG n 1 114 GLY n 1 115 ARG n 1 116 TYR n 1 117 TYR n 1 118 GLN n 1 119 LEU n 1 120 GLY n 1 121 THR n 1 122 THR n 1 123 ASP n 1 124 ASP n 1 125 ASN n 1 126 PRO n 1 127 THR n 1 128 GLY n 1 129 VAL n 1 130 ARG n 1 131 GLY n 1 132 VAL n 1 133 THR n 1 134 ASN n 1 135 PHE n 1 136 GLN n 1 137 MET n 1 138 VAL n 1 139 LYS n 1 140 ALA n 1 141 ASP n 1 142 ALA n 1 143 SER n 1 144 ILE n 1 145 ALA n 1 146 ILE n 1 147 SER n 1 148 VAL n 1 149 GLY n 1 150 SER n 1 151 GLY n 1 152 ASP n 1 153 ILE n 1 154 THR n 1 155 SER n 1 156 ILE n 1 157 VAL n 1 158 GLY n 1 159 ALA n 1 160 THR n 1 161 VAL n 1 162 VAL n 1 163 ASN n 1 164 PRO n 1 165 ALA n 1 166 GLY n 1 167 ASN n 1 168 TYR n 1 169 GLU n 1 170 ILE n 1 171 ASP n 1 172 LEU n 1 173 GLU n 1 174 ALA n 1 175 GLY n 1 176 ARG n 1 177 ILE n 1 178 TYR n 1 179 ILE n 1 180 GLU n 1 181 PRO n 1 182 ASP n 1 183 SER n 1 184 THR n 1 185 ASP n 1 186 LEU n 1 187 SER n 1 188 GLY n 1 189 ASN n 1 190 VAL n 1 191 GLN n 1 192 ILE n 1 193 ALA n 1 194 VAL n 1 195 GLN n 1 196 TYR n 1 197 ASP n 1 198 VAL n 1 199 ASP n 1 200 ALA n 1 201 GLN n 1 202 LYS n 1 203 ARG n 1 204 THR n 1 205 LEU n 1 206 VAL n 1 207 ILE n 1 208 GLY n 1 209 LYS n 1 210 SER n 1 211 ASN n 1 212 MET n 1 213 VAL n 1 214 TYR n 1 215 GLY n 1 216 ALA n 1 217 LEU n 1 218 ARG n 1 219 MET n 1 220 ILE n 1 221 SER n 1 222 ASP n 1 223 ASN n 1 224 PRO n 1 225 VAL n 1 226 GLY n 1 227 LEU n 1 228 ASN n 1 229 LYS n 1 230 ASN n 1 231 TYR n 1 232 TYR n 1 233 PHE n 1 234 PRO n 1 235 LYS n 1 236 VAL n 1 237 SER n 1 238 ILE n 1 239 ALA n 1 240 PRO n 1 241 ASP n 1 242 GLY n 1 243 ASP n 1 244 TYR n 1 245 ALA n 1 246 LEU n 1 247 LYS n 1 248 GLY n 1 249 ASP n 1 250 ASP n 1 251 TRP n 1 252 GLN n 1 253 VAL n 1 254 MET n 1 255 SER n 1 256 PHE n 1 257 THR n 1 258 PHE n 1 259 LYS n 1 260 ALA n 1 261 MET n 1 262 GLN n 1 263 LEU n 1 264 ASN n 1 265 ASN n 1 266 ILE n 1 267 THR n 1 268 GLN n 1 269 ARG n 1 270 VAL n 1 271 TYR n 1 272 ILE n 1 273 ASP n 1 274 ILE n 1 275 VAL n 1 276 GLU n 1 277 ALA n 1 278 ALA n 1 279 ALA n 1 280 ALA n 1 281 VAL n 1 282 ASP n 1 283 PRO n 1 284 THR n 1 285 ALA n 1 286 GLN n 1 287 ARG n 1 288 THR n 1 289 ILE n 1 290 GLU n 1 291 ILE n 1 292 THR n 1 293 PRO n 1 294 ALA n 1 295 SER n 1 296 THR n 1 297 THR n 1 298 ALA n 1 299 THR n 1 300 THR n 1 301 GLY n 1 302 GLY n 1 303 ALA n 1 304 GLY n 1 305 VAL n 1 306 VAL n 1 307 CYS n 1 308 THR n 1 309 VAL n 1 310 THR n 1 311 VAL n 1 312 ARG n 1 313 ASP n 1 314 GLY n 1 315 THR n 1 316 GLY n 1 317 THR n 1 318 ALA n 1 319 VAL n 1 320 GLN n 1 321 GLY n 1 322 ASP n 1 323 ALA n 1 324 VAL n 1 325 THR n 1 326 PHE n 1 327 THR n 1 328 THR n 1 329 VAL n 1 330 ALA n 1 331 GLY n 1 332 ALA n 1 333 THR n 1 334 VAL n 1 335 THR n 1 336 PRO n 1 337 ASN n 1 338 SER n 1 339 ALA n 1 340 THR n 1 341 THR n 1 342 GLY n 1 343 ALA n 1 344 THR n 1 345 GLY n 1 346 THR n 1 347 ALA n 1 348 THR n 1 349 THR n 1 350 THR n 1 351 VAL n 1 352 ASN n 1 353 ARG n 1 354 ALA n 1 355 ALA n 1 356 ALA n 1 357 GLY n 1 358 THR n 1 359 ALA n 1 360 THR n 1 361 VAL n 1 362 THR n 1 363 ALA n 1 364 THR n 1 365 LEU n 1 366 ALA n 1 367 ASN n 1 368 GLY n 1 369 LYS n 1 370 ALA n 1 371 ALA n 1 372 THR n 1 373 THR n 1 374 GLY n 1 375 THR n 1 376 ILE n 1 377 THR n 1 378 PHE n 1 379 SER n 1 380 ALA n 1 381 PRO n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 381 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Chivirus chi' _entity_src_nat.pdbx_ncbi_taxonomy_id 1541887 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 MET 32 32 32 MET MET A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 HIS 51 51 51 HIS HIS A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 MET 61 61 61 MET MET A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 CYS 77 77 77 CYS CYS A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 TRP 88 88 88 TRP TRP A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 GLN 100 100 100 GLN GLN A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 MET 112 112 112 MET MET A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 ASN 125 125 125 ASN ASN A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 ARG 130 130 130 ARG ARG A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 ASN 134 134 134 ASN ASN A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 GLN 136 136 136 GLN GLN A . n A 1 137 MET 137 137 137 MET MET A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 VAL 157 157 157 VAL VAL A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 ALA 159 159 159 ALA ALA A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 VAL 161 161 161 VAL VAL A . n A 1 162 VAL 162 162 162 VAL VAL A . n A 1 163 ASN 163 163 163 ASN ASN A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 TYR 168 168 168 TYR TYR A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 ASP 171 171 171 ASP ASP A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 GLY 175 175 175 GLY GLY A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 ILE 177 177 177 ILE ILE A . n A 1 178 TYR 178 178 178 TYR TYR A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 PRO 181 181 181 PRO PRO A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 SER 183 183 183 SER SER A . n A 1 184 THR 184 184 184 THR THR A . n A 1 185 ASP 185 185 185 ASP ASP A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 SER 187 187 187 SER SER A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 GLN 191 191 191 GLN GLN A . n A 1 192 ILE 192 192 192 ILE ILE A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 VAL 194 194 194 VAL VAL A . n A 1 195 GLN 195 195 195 GLN GLN A . n A 1 196 TYR 196 196 196 TYR TYR A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 ASP 199 199 199 ASP ASP A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 GLN 201 201 201 GLN GLN A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 ARG 203 203 203 ARG ARG A . n A 1 204 THR 204 204 204 THR THR A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 VAL 206 206 206 VAL VAL A . n A 1 207 ILE 207 207 207 ILE ILE A . n A 1 208 GLY 208 208 208 GLY GLY A . n A 1 209 LYS 209 209 209 LYS LYS A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 ASN 211 211 211 ASN ASN A . n A 1 212 MET 212 212 212 MET MET A . n A 1 213 VAL 213 213 213 VAL VAL A . n A 1 214 TYR 214 214 214 TYR TYR A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 LEU 217 217 217 LEU LEU A . n A 1 218 ARG 218 218 218 ARG ARG A . n A 1 219 MET 219 219 219 MET MET A . n A 1 220 ILE 220 220 220 ILE ILE A . n A 1 221 SER 221 221 221 SER SER A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 ASN 223 223 223 ASN ASN A . n A 1 224 PRO 224 224 224 PRO PRO A . n A 1 225 VAL 225 225 225 VAL VAL A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 ASN 228 228 228 ASN ASN A . n A 1 229 LYS 229 229 229 LYS LYS A . n A 1 230 ASN 230 230 230 ASN ASN A . n A 1 231 TYR 231 231 231 TYR TYR A . n A 1 232 TYR 232 232 232 TYR TYR A . n A 1 233 PHE 233 233 233 PHE PHE A . n A 1 234 PRO 234 234 234 PRO PRO A . n A 1 235 LYS 235 235 235 LYS LYS A . n A 1 236 VAL 236 236 236 VAL VAL A . n A 1 237 SER 237 237 237 SER SER A . n A 1 238 ILE 238 238 238 ILE ILE A . n A 1 239 ALA 239 239 239 ALA ALA A . n A 1 240 PRO 240 240 240 PRO PRO A . n A 1 241 ASP 241 241 241 ASP ASP A . n A 1 242 GLY 242 242 242 GLY GLY A . n A 1 243 ASP 243 243 243 ASP ASP A . n A 1 244 TYR 244 244 244 TYR TYR A . n A 1 245 ALA 245 245 245 ALA ALA A . n A 1 246 LEU 246 246 246 LEU LEU A . n A 1 247 LYS 247 247 247 LYS LYS A . n A 1 248 GLY 248 248 248 GLY GLY A . n A 1 249 ASP 249 249 249 ASP ASP A . n A 1 250 ASP 250 250 250 ASP ASP A . n A 1 251 TRP 251 251 251 TRP TRP A . n A 1 252 GLN 252 252 252 GLN GLN A . n A 1 253 VAL 253 253 253 VAL VAL A . n A 1 254 MET 254 254 254 MET MET A . n A 1 255 SER 255 255 255 SER SER A . n A 1 256 PHE 256 256 256 PHE PHE A . n A 1 257 THR 257 257 257 THR THR A . n A 1 258 PHE 258 258 258 PHE PHE A . n A 1 259 LYS 259 259 259 LYS LYS A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 MET 261 261 261 MET MET A . n A 1 262 GLN 262 262 262 GLN GLN A . n A 1 263 LEU 263 263 263 LEU LEU A . n A 1 264 ASN 264 264 264 ASN ASN A . n A 1 265 ASN 265 265 265 ASN ASN A . n A 1 266 ILE 266 266 266 ILE ILE A . n A 1 267 THR 267 267 267 THR THR A . n A 1 268 GLN 268 268 268 GLN GLN A . n A 1 269 ARG 269 269 269 ARG ARG A . n A 1 270 VAL 270 270 270 VAL VAL A . n A 1 271 TYR 271 271 271 TYR TYR A . n A 1 272 ILE 272 272 272 ILE ILE A . n A 1 273 ASP 273 273 273 ASP ASP A . n A 1 274 ILE 274 274 274 ILE ILE A . n A 1 275 VAL 275 275 275 VAL VAL A . n A 1 276 GLU 276 276 276 GLU GLU A . n A 1 277 ALA 277 277 ? ? ? A . n A 1 278 ALA 278 278 ? ? ? A . n A 1 279 ALA 279 279 ? ? ? A . n A 1 280 ALA 280 280 ? ? ? A . n A 1 281 VAL 281 281 ? ? ? A . n A 1 282 ASP 282 282 ? ? ? A . n A 1 283 PRO 283 283 ? ? ? A . n A 1 284 THR 284 284 ? ? ? A . n A 1 285 ALA 285 285 ? ? ? A . n A 1 286 GLN 286 286 ? ? ? A . n A 1 287 ARG 287 287 ? ? ? A . n A 1 288 THR 288 288 ? ? ? A . n A 1 289 ILE 289 289 ? ? ? A . n A 1 290 GLU 290 290 ? ? ? A . n A 1 291 ILE 291 291 ? ? ? A . n A 1 292 THR 292 292 ? ? ? A . n A 1 293 PRO 293 293 ? ? ? A . n A 1 294 ALA 294 294 ? ? ? A . n A 1 295 SER 295 295 ? ? ? A . n A 1 296 THR 296 296 ? ? ? A . n A 1 297 THR 297 297 ? ? ? A . n A 1 298 ALA 298 298 ? ? ? A . n A 1 299 THR 299 299 ? ? ? A . n A 1 300 THR 300 300 ? ? ? A . n A 1 301 GLY 301 301 ? ? ? A . n A 1 302 GLY 302 302 ? ? ? A . n A 1 303 ALA 303 303 ? ? ? A . n A 1 304 GLY 304 304 ? ? ? A . n A 1 305 VAL 305 305 ? ? ? A . n A 1 306 VAL 306 306 ? ? ? A . n A 1 307 CYS 307 307 ? ? ? A . n A 1 308 THR 308 308 ? ? ? A . n A 1 309 VAL 309 309 ? ? ? A . n A 1 310 THR 310 310 ? ? ? A . n A 1 311 VAL 311 311 ? ? ? A . n A 1 312 ARG 312 312 ? ? ? A . n A 1 313 ASP 313 313 ? ? ? A . n A 1 314 GLY 314 314 ? ? ? A . n A 1 315 THR 315 315 ? ? ? A . n A 1 316 GLY 316 316 ? ? ? A . n A 1 317 THR 317 317 ? ? ? A . n A 1 318 ALA 318 318 ? ? ? A . n A 1 319 VAL 319 319 ? ? ? A . n A 1 320 GLN 320 320 ? ? ? A . n A 1 321 GLY 321 321 ? ? ? A . n A 1 322 ASP 322 322 ? ? ? A . n A 1 323 ALA 323 323 ? ? ? A . n A 1 324 VAL 324 324 ? ? ? A . n A 1 325 THR 325 325 ? ? ? A . n A 1 326 PHE 326 326 ? ? ? A . n A 1 327 THR 327 327 ? ? ? A . n A 1 328 THR 328 328 ? ? ? A . n A 1 329 VAL 329 329 ? ? ? A . n A 1 330 ALA 330 330 ? ? ? A . n A 1 331 GLY 331 331 ? ? ? A . n A 1 332 ALA 332 332 ? ? ? A . n A 1 333 THR 333 333 ? ? ? A . n A 1 334 VAL 334 334 ? ? ? A . n A 1 335 THR 335 335 ? ? ? A . n A 1 336 PRO 336 336 ? ? ? A . n A 1 337 ASN 337 337 ? ? ? A . n A 1 338 SER 338 338 ? ? ? A . n A 1 339 ALA 339 339 ? ? ? A . n A 1 340 THR 340 340 ? ? ? A . n A 1 341 THR 341 341 ? ? ? A . n A 1 342 GLY 342 342 ? ? ? A . n A 1 343 ALA 343 343 ? ? ? A . n A 1 344 THR 344 344 ? ? ? A . n A 1 345 GLY 345 345 ? ? ? A . n A 1 346 THR 346 346 ? ? ? A . n A 1 347 ALA 347 347 ? ? ? A . n A 1 348 THR 348 348 ? ? ? A . n A 1 349 THR 349 349 ? ? ? A . n A 1 350 THR 350 350 ? ? ? A . n A 1 351 VAL 351 351 ? ? ? A . n A 1 352 ASN 352 352 ? ? ? A . n A 1 353 ARG 353 353 ? ? ? A . n A 1 354 ALA 354 354 ? ? ? A . n A 1 355 ALA 355 355 ? ? ? A . n A 1 356 ALA 356 356 ? ? ? A . n A 1 357 GLY 357 357 ? ? ? A . n A 1 358 THR 358 358 ? ? ? A . n A 1 359 ALA 359 359 ? ? ? A . n A 1 360 THR 360 360 ? ? ? A . n A 1 361 VAL 361 361 ? ? ? A . n A 1 362 THR 362 362 ? ? ? A . n A 1 363 ALA 363 363 ? ? ? A . n A 1 364 THR 364 364 ? ? ? A . n A 1 365 LEU 365 365 ? ? ? A . n A 1 366 ALA 366 366 ? ? ? A . n A 1 367 ASN 367 367 ? ? ? A . n A 1 368 GLY 368 368 ? ? ? A . n A 1 369 LYS 369 369 ? ? ? A . n A 1 370 ALA 370 370 ? ? ? A . n A 1 371 ALA 371 371 ? ? ? A . n A 1 372 THR 372 372 ? ? ? A . n A 1 373 THR 373 373 ? ? ? A . n A 1 374 GLY 374 374 ? ? ? A . n A 1 375 THR 375 375 ? ? ? A . n A 1 376 ILE 376 376 ? ? ? A . n A 1 377 THR 377 377 ? ? ? A . n A 1 378 PHE 378 378 ? ? ? A . n A 1 379 SER 379 379 ? ? ? A . n A 1 380 ALA 380 380 ? ? ? A . n A 1 381 PRO 381 381 ? ? ? A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 2 ? CG ? A ASN 2 CG 2 1 Y 1 A ASN 2 ? OD1 ? A ASN 2 OD1 3 1 Y 1 A ASN 2 ? ND2 ? A ASN 2 ND2 4 1 Y 1 A ASP 23 ? CG ? A ASP 23 CG 5 1 Y 1 A ASP 23 ? OD1 ? A ASP 23 OD1 6 1 Y 1 A ASP 23 ? OD2 ? A ASP 23 OD2 7 1 Y 1 A ASP 141 ? CG ? A ASP 141 CG 8 1 Y 1 A ASP 141 ? OD1 ? A ASP 141 OD1 9 1 Y 1 A ASP 141 ? OD2 ? A ASP 141 OD2 10 1 Y 1 A ASP 152 ? CG ? A ASP 152 CG 11 1 Y 1 A ASP 152 ? OD1 ? A ASP 152 OD1 12 1 Y 1 A ASP 152 ? OD2 ? A ASP 152 OD2 13 1 Y 1 A ASN 163 ? CG ? A ASN 163 CG 14 1 Y 1 A ASN 163 ? OD1 ? A ASN 163 OD1 15 1 Y 1 A ASN 163 ? ND2 ? A ASN 163 ND2 16 1 Y 1 A ASP 185 ? CG ? A ASP 185 CG 17 1 Y 1 A ASP 185 ? OD1 ? A ASP 185 OD1 18 1 Y 1 A ASP 185 ? OD2 ? A ASP 185 OD2 19 1 Y 1 A LYS 202 ? CG ? A LYS 202 CG 20 1 Y 1 A LYS 202 ? CD ? A LYS 202 CD 21 1 Y 1 A LYS 202 ? CE ? A LYS 202 CE 22 1 Y 1 A LYS 202 ? NZ ? A LYS 202 NZ 23 1 Y 1 A GLU 276 ? CG ? A GLU 276 CG 24 1 Y 1 A GLU 276 ? CD ? A GLU 276 CD 25 1 Y 1 A GLU 276 ? OE1 ? A GLU 276 OE1 26 1 Y 1 A GLU 276 ? OE2 ? A GLU 276 OE2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VJA _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8VJA _struct.title 'Cryo-EM of tail of bacteriophage Chi' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VJA _struct_keywords.text 'Flagellotropic bacteriophage, Siphophage, Tail, VIRUS' _struct_keywords.pdbx_keywords VIRUS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code M9NUS9_9CAUD _struct_ref.pdbx_db_accession M9NUS9 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNDNYQNNYVVGRGTVYFDRFQDGTNRKTGEMYFGNTPEFTINTDSETLDHYSSDHGMRVMDASVLLEASQGGTFTCDNI NADNLALWFLGEVSNTTQTQQTDAKEVFNPIMRGRYYQLGTTDDNPTGVRGVTNFQMVKADASIAISVGSGDITSIVGAT VVNPAGNYEIDLEAGRIYIEPDSTDLSGNVQIAVQYDVDAQKRTLVIGKSNMVYGALRMISDNPVGLNKNYYFPKVSIAP DGDYALKGDDWQVMSFTFKAMQLNNITQRVYIDIVEAAAAVDPTAQRTIEITPASTTATTGGAGVVCTVTVRDGTGTAVQ GDAVTFTTVAGATVTPNSATTGATGTATTTVNRAAAGTATVTATLANGKAATTGTITFSAP ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8VJA _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 381 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession M9NUS9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 381 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 381 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 81 ? PHE A 89 ? ASN A 81 PHE A 89 1 ? 9 HELX_P HELX_P2 AA2 ASP A 152 ? ILE A 156 ? ASP A 152 ILE A 156 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 5 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET A 32 ? TYR A 33 ? MET A 32 TYR A 33 AA1 2 GLY A 14 ? ARG A 20 ? GLY A 14 ARG A 20 AA1 3 VAL A 213 ? SER A 221 ? VAL A 213 SER A 221 AA1 4 LYS A 229 ? PRO A 240 ? LYS A 229 PRO A 240 AA1 5 MET A 254 ? MET A 261 ? MET A 254 MET A 261 AA1 6 MET A 61 ? CYS A 77 ? MET A 61 CYS A 77 AA1 7 PHE A 40 ? TYR A 52 ? PHE A 40 TYR A 52 AA2 1 MET A 32 ? TYR A 33 ? MET A 32 TYR A 33 AA2 2 GLY A 14 ? ARG A 20 ? GLY A 14 ARG A 20 AA2 3 VAL A 213 ? SER A 221 ? VAL A 213 SER A 221 AA2 4 LYS A 229 ? PRO A 240 ? LYS A 229 PRO A 240 AA2 5 TYR A 271 ? ILE A 274 ? TYR A 271 ILE A 274 AA3 1 GLU A 92 ? THR A 97 ? GLU A 92 THR A 97 AA3 2 LYS A 202 ? ILE A 207 ? LYS A 202 ILE A 207 AA4 1 GLN A 101 ? PHE A 108 ? GLN A 101 PHE A 108 AA4 2 VAL A 190 ? VAL A 198 ? VAL A 190 VAL A 198 AA4 3 VAL A 132 ? ASP A 141 ? VAL A 132 ASP A 141 AA4 4 THR A 160 ? VAL A 161 ? THR A 160 VAL A 161 AA5 1 ARG A 115 ? GLN A 118 ? ARG A 115 GLN A 118 AA5 2 ARG A 176 ? ILE A 179 ? ARG A 176 ILE A 179 AA5 3 TYR A 168 ? ASP A 171 ? TYR A 168 ASP A 171 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O MET A 32 ? O MET A 32 N PHE A 18 ? N PHE A 18 AA1 2 3 N TYR A 17 ? N TYR A 17 O ARG A 218 ? O ARG A 218 AA1 3 4 N LEU A 217 ? N LEU A 217 O PHE A 233 ? O PHE A 233 AA1 4 5 N LYS A 235 ? N LYS A 235 O MET A 261 ? O MET A 261 AA1 5 6 O PHE A 256 ? O PHE A 256 N PHE A 75 ? N PHE A 75 AA1 6 7 O THR A 74 ? O THR A 74 N THR A 41 ? N THR A 41 AA2 1 2 O MET A 32 ? O MET A 32 N PHE A 18 ? N PHE A 18 AA2 2 3 N TYR A 17 ? N TYR A 17 O ARG A 218 ? O ARG A 218 AA2 3 4 N LEU A 217 ? N LEU A 217 O PHE A 233 ? O PHE A 233 AA2 4 5 N TYR A 232 ? N TYR A 232 O TYR A 271 ? O TYR A 271 AA3 1 2 N THR A 96 ? N THR A 96 O ARG A 203 ? O ARG A 203 AA4 1 2 N GLN A 101 ? N GLN A 101 O VAL A 198 ? O VAL A 198 AA4 2 3 O ALA A 193 ? O ALA A 193 N VAL A 138 ? N VAL A 138 AA4 3 4 N LYS A 139 ? N LYS A 139 O THR A 160 ? O THR A 160 AA5 1 2 N TYR A 117 ? N TYR A 117 O ILE A 177 ? O ILE A 177 AA5 2 3 O TYR A 178 ? O TYR A 178 N GLU A 169 ? N GLU A 169 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 3 ? ? -65.49 -73.17 2 1 ASN A 4 ? ? -56.40 104.07 3 1 LYS A 209 ? ? -73.64 -163.41 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8VJA _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8VJA _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 83657 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Chivirus chi' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8VJA _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate OTHER _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty NO _em_virus_entity.details ? # _em_vitrification.entry_id 8VJA _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8VJA _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 277 ? A ALA 277 3 1 Y 1 A ALA 278 ? A ALA 278 4 1 Y 1 A ALA 279 ? A ALA 279 5 1 Y 1 A ALA 280 ? A ALA 280 6 1 Y 1 A VAL 281 ? A VAL 281 7 1 Y 1 A ASP 282 ? A ASP 282 8 1 Y 1 A PRO 283 ? A PRO 283 9 1 Y 1 A THR 284 ? A THR 284 10 1 Y 1 A ALA 285 ? A ALA 285 11 1 Y 1 A GLN 286 ? A GLN 286 12 1 Y 1 A ARG 287 ? A ARG 287 13 1 Y 1 A THR 288 ? A THR 288 14 1 Y 1 A ILE 289 ? A ILE 289 15 1 Y 1 A GLU 290 ? A GLU 290 16 1 Y 1 A ILE 291 ? A ILE 291 17 1 Y 1 A THR 292 ? A THR 292 18 1 Y 1 A PRO 293 ? A PRO 293 19 1 Y 1 A ALA 294 ? A ALA 294 20 1 Y 1 A SER 295 ? A SER 295 21 1 Y 1 A THR 296 ? A THR 296 22 1 Y 1 A THR 297 ? A THR 297 23 1 Y 1 A ALA 298 ? A ALA 298 24 1 Y 1 A THR 299 ? A THR 299 25 1 Y 1 A THR 300 ? A THR 300 26 1 Y 1 A GLY 301 ? A GLY 301 27 1 Y 1 A GLY 302 ? A GLY 302 28 1 Y 1 A ALA 303 ? A ALA 303 29 1 Y 1 A GLY 304 ? A GLY 304 30 1 Y 1 A VAL 305 ? A VAL 305 31 1 Y 1 A VAL 306 ? A VAL 306 32 1 Y 1 A CYS 307 ? A CYS 307 33 1 Y 1 A THR 308 ? A THR 308 34 1 Y 1 A VAL 309 ? A VAL 309 35 1 Y 1 A THR 310 ? A THR 310 36 1 Y 1 A VAL 311 ? A VAL 311 37 1 Y 1 A ARG 312 ? A ARG 312 38 1 Y 1 A ASP 313 ? A ASP 313 39 1 Y 1 A GLY 314 ? A GLY 314 40 1 Y 1 A THR 315 ? A THR 315 41 1 Y 1 A GLY 316 ? A GLY 316 42 1 Y 1 A THR 317 ? A THR 317 43 1 Y 1 A ALA 318 ? A ALA 318 44 1 Y 1 A VAL 319 ? A VAL 319 45 1 Y 1 A GLN 320 ? A GLN 320 46 1 Y 1 A GLY 321 ? A GLY 321 47 1 Y 1 A ASP 322 ? A ASP 322 48 1 Y 1 A ALA 323 ? A ALA 323 49 1 Y 1 A VAL 324 ? A VAL 324 50 1 Y 1 A THR 325 ? A THR 325 51 1 Y 1 A PHE 326 ? A PHE 326 52 1 Y 1 A THR 327 ? A THR 327 53 1 Y 1 A THR 328 ? A THR 328 54 1 Y 1 A VAL 329 ? A VAL 329 55 1 Y 1 A ALA 330 ? A ALA 330 56 1 Y 1 A GLY 331 ? A GLY 331 57 1 Y 1 A ALA 332 ? A ALA 332 58 1 Y 1 A THR 333 ? A THR 333 59 1 Y 1 A VAL 334 ? A VAL 334 60 1 Y 1 A THR 335 ? A THR 335 61 1 Y 1 A PRO 336 ? A PRO 336 62 1 Y 1 A ASN 337 ? A ASN 337 63 1 Y 1 A SER 338 ? A SER 338 64 1 Y 1 A ALA 339 ? A ALA 339 65 1 Y 1 A THR 340 ? A THR 340 66 1 Y 1 A THR 341 ? A THR 341 67 1 Y 1 A GLY 342 ? A GLY 342 68 1 Y 1 A ALA 343 ? A ALA 343 69 1 Y 1 A THR 344 ? A THR 344 70 1 Y 1 A GLY 345 ? A GLY 345 71 1 Y 1 A THR 346 ? A THR 346 72 1 Y 1 A ALA 347 ? A ALA 347 73 1 Y 1 A THR 348 ? A THR 348 74 1 Y 1 A THR 349 ? A THR 349 75 1 Y 1 A THR 350 ? A THR 350 76 1 Y 1 A VAL 351 ? A VAL 351 77 1 Y 1 A ASN 352 ? A ASN 352 78 1 Y 1 A ARG 353 ? A ARG 353 79 1 Y 1 A ALA 354 ? A ALA 354 80 1 Y 1 A ALA 355 ? A ALA 355 81 1 Y 1 A ALA 356 ? A ALA 356 82 1 Y 1 A GLY 357 ? A GLY 357 83 1 Y 1 A THR 358 ? A THR 358 84 1 Y 1 A ALA 359 ? A ALA 359 85 1 Y 1 A THR 360 ? A THR 360 86 1 Y 1 A VAL 361 ? A VAL 361 87 1 Y 1 A THR 362 ? A THR 362 88 1 Y 1 A ALA 363 ? A ALA 363 89 1 Y 1 A THR 364 ? A THR 364 90 1 Y 1 A LEU 365 ? A LEU 365 91 1 Y 1 A ALA 366 ? A ALA 366 92 1 Y 1 A ASN 367 ? A ASN 367 93 1 Y 1 A GLY 368 ? A GLY 368 94 1 Y 1 A LYS 369 ? A LYS 369 95 1 Y 1 A ALA 370 ? A ALA 370 96 1 Y 1 A ALA 371 ? A ALA 371 97 1 Y 1 A THR 372 ? A THR 372 98 1 Y 1 A THR 373 ? A THR 373 99 1 Y 1 A GLY 374 ? A GLY 374 100 1 Y 1 A THR 375 ? A THR 375 101 1 Y 1 A ILE 376 ? A ILE 376 102 1 Y 1 A THR 377 ? A THR 377 103 1 Y 1 A PHE 378 ? A PHE 378 104 1 Y 1 A SER 379 ? A SER 379 105 1 Y 1 A ALA 380 ? A ALA 380 106 1 Y 1 A PRO 381 ? A PRO 381 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2024-01-06 _em_admin.deposition_site RCSB _em_admin.entry_id 8VJA _em_admin.last_update 2024-10-02 _em_admin.map_release_date 2024-10-02 _em_admin.title 'Cryo-EM of tail of bacteriophage Chi' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1541887 _em_entity_assembly_naturalsource.organism 'Chivirus chi' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C6 _em_helical_entity.angular_rotation_per_subunit -40.83 _em_helical_entity.axial_rise_per_subunit 40.86 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.15.2_3472: 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? MASKING ? 4 ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? ? ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details 'Tail of bacteriophage Chi' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM122510 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8VJA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_