HEADER RNA/IMMUNE SYSTEM 13-JAN-24 8VM8 TITLE THE CRYSTAL STRUCTURE OF COXSACKIEVIRUS B3 RNA REPLICATION ELEMENT SD- TITLE 2 LOOP MUTANT IN COMPLEX WITH FAB BL3-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (93-MER); COMPND 3 CHAIN: R; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN OF FAB BL3-6; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LIGHT CHAIN OF FAB BL3-6; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 3; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENTEROVIRAL RNA, CLOVERLEAF-LIKE RNA, CVB3 RNA REPLICATION ELEMENT, KEYWDS 2 ENTEROVIRUS REPLICATION PLATFORM, RNA-FAB COMPLEX, RNA, RNA-IMMUNE KEYWDS 3 SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.K.DAS,D.KOIRALA REVDAT 2 07-AUG-24 8VM8 1 JRNL REVDAT 1 24-JUL-24 8VM8 0 JRNL AUTH N.K.DAS,J.VOGT,A.PATEL,H.A.BANNA,D.KOIRALA JRNL TITL STRUCTURAL BASIS FOR A HIGHLY CONSERVED RNA-MEDIATED JRNL TITL 2 ENTEROVIRAL GENOME REPLICATION. JRNL REF NUCLEIC ACIDS RES. 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39036953 JRNL DOI 10.1093/NAR/GKAE627 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 138664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.430 REMARK 3 FREE R VALUE TEST SET COUNT : 3910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3100 - 4.6700 1.00 9613 139 0.1596 0.1932 REMARK 3 2 4.6700 - 3.7100 1.00 9633 139 0.1430 0.1637 REMARK 3 3 3.7100 - 3.2400 1.00 9616 140 0.1450 0.1629 REMARK 3 4 3.2400 - 2.9500 1.00 9663 140 0.1704 0.1811 REMARK 3 5 2.9500 - 2.7300 1.00 9648 142 0.1747 0.2240 REMARK 3 6 2.7300 - 2.5700 1.00 9589 143 0.1863 0.1948 REMARK 3 7 2.5700 - 2.4400 1.00 9624 138 0.1819 0.2535 REMARK 3 8 2.4400 - 2.3400 1.00 9668 140 0.1877 0.2248 REMARK 3 9 2.3400 - 2.2500 1.00 9550 140 0.1827 0.2065 REMARK 3 10 2.2500 - 2.1700 1.00 9632 143 0.1789 0.2125 REMARK 3 11 2.1700 - 2.1000 1.00 9632 138 0.1770 0.2083 REMARK 3 12 2.1000 - 2.0400 1.00 9590 139 0.1824 0.2240 REMARK 3 13 2.0400 - 1.9900 1.00 9603 140 0.2028 0.2476 REMARK 3 14 1.9900 - 1.9400 1.00 9643 140 0.2069 0.2585 REMARK 3 15 1.9400 - 1.9000 1.00 9577 138 0.2131 0.2568 REMARK 3 16 1.9000 - 1.8600 1.00 9600 140 0.2191 0.2459 REMARK 3 17 1.8600 - 1.8200 1.00 9636 141 0.2324 0.2436 REMARK 3 18 1.8200 - 1.7800 1.00 9654 140 0.2492 0.2858 REMARK 3 19 1.7800 - 1.7500 1.00 9556 139 0.2660 0.3046 REMARK 3 20 1.7500 - 1.7200 1.00 9640 140 0.2826 0.2783 REMARK 3 21 1.7200 - 1.6900 1.00 9580 136 0.3012 0.2959 REMARK 3 22 1.6900 - 1.6700 1.00 9583 141 0.3239 0.3362 REMARK 3 23 1.6700 - 1.6400 0.99 9670 138 0.3177 0.3234 REMARK 3 24 1.6400 - 1.6200 1.00 9642 141 0.3361 0.3600 REMARK 3 25 1.6200 - 1.6000 0.99 9489 138 0.3451 0.3762 REMARK 3 26 1.6000 - 1.5800 0.99 9551 142 0.3547 0.2866 REMARK 3 27 1.5800 - 1.5600 0.98 9419 137 0.3652 0.3634 REMARK 3 28 1.5600 - 1.5400 0.97 9295 138 0.3760 0.3843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5609 REMARK 3 ANGLE : 0.764 8056 REMARK 3 CHIRALITY : 0.047 985 REMARK 3 PLANARITY : 0.007 686 REMARK 3 DIHEDRAL : 13.312 2333 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 190 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.3635 34.2797 64.9297 REMARK 3 T TENSOR REMARK 3 T11: 0.2210 T22: 0.3649 REMARK 3 T33: 0.2436 T12: -0.0453 REMARK 3 T13: 0.0010 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 5.6127 L22: 5.2995 REMARK 3 L33: 3.8232 L12: -3.7346 REMARK 3 L13: 2.4980 L23: -1.8258 REMARK 3 S TENSOR REMARK 3 S11: -0.0982 S12: -0.2727 S13: 0.3995 REMARK 3 S21: 0.1970 S22: -0.0827 S23: -0.2546 REMARK 3 S31: -0.1727 S32: 0.3266 S33: 0.1892 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8316 16.8763 -21.4640 REMARK 3 T TENSOR REMARK 3 T11: 1.1071 T22: 1.4243 REMARK 3 T33: 0.8044 T12: 0.0869 REMARK 3 T13: -0.5366 T23: -0.4671 REMARK 3 L TENSOR REMARK 3 L11: 3.2418 L22: 1.7123 REMARK 3 L33: 2.3472 L12: 0.2192 REMARK 3 L13: -2.2482 L23: -0.6413 REMARK 3 S TENSOR REMARK 3 S11: -0.8171 S12: 0.4363 S13: 0.5189 REMARK 3 S21: -0.2393 S22: 0.4428 S23: 0.2750 REMARK 3 S31: -0.9296 S32: -0.1309 S33: 1.4717 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 11 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6758 22.2733 -27.6386 REMARK 3 T TENSOR REMARK 3 T11: 1.4611 T22: 1.8338 REMARK 3 T33: 0.8576 T12: -0.1628 REMARK 3 T13: -0.2238 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 4.7884 L22: 2.4457 REMARK 3 L33: 3.6711 L12: -0.7973 REMARK 3 L13: -4.0240 L23: 0.1873 REMARK 3 S TENSOR REMARK 3 S11: -0.3479 S12: -0.6122 S13: -0.2726 REMARK 3 S21: -0.6849 S22: -0.0255 S23: -0.1333 REMARK 3 S31: -1.4582 S32: 2.8125 S33: 0.2713 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 31 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7682 18.9523 -1.7555 REMARK 3 T TENSOR REMARK 3 T11: 1.0068 T22: 1.0910 REMARK 3 T33: 0.4963 T12: -0.0545 REMARK 3 T13: -0.2764 T23: -0.0739 REMARK 3 L TENSOR REMARK 3 L11: 1.2498 L22: 4.8381 REMARK 3 L33: 3.8343 L12: -0.0860 REMARK 3 L13: 2.1700 L23: -0.6659 REMARK 3 S TENSOR REMARK 3 S11: -0.2023 S12: 1.3776 S13: 0.0538 REMARK 3 S21: -0.7550 S22: -0.0418 S23: 0.1976 REMARK 3 S31: -0.2804 S32: 0.3424 S33: 0.1710 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 56 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8299 13.4456 23.4714 REMARK 3 T TENSOR REMARK 3 T11: 0.3079 T22: 0.2238 REMARK 3 T33: 0.1934 T12: -0.0199 REMARK 3 T13: -0.0293 T23: 0.0477 REMARK 3 L TENSOR REMARK 3 L11: 2.7424 L22: 2.2695 REMARK 3 L33: 3.8825 L12: 0.5419 REMARK 3 L13: 0.3676 L23: -2.1155 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: 0.4420 S13: 0.2232 REMARK 3 S21: -0.4301 S22: 0.0196 S23: -0.0130 REMARK 3 S31: -0.2963 S32: 0.0392 S33: 0.0046 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'R' AND (RESID 76 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3136 15.2093 -14.3335 REMARK 3 T TENSOR REMARK 3 T11: 0.7836 T22: 0.9811 REMARK 3 T33: 0.5351 T12: 0.0017 REMARK 3 T13: -0.3596 T23: -0.1619 REMARK 3 L TENSOR REMARK 3 L11: 1.3408 L22: 1.2497 REMARK 3 L33: 0.2352 L12: 0.5994 REMARK 3 L13: -0.5220 L23: -0.0780 REMARK 3 S TENSOR REMARK 3 S11: 0.1415 S12: 0.4433 S13: -0.2230 REMARK 3 S21: -0.6863 S22: 0.0187 S23: 0.4500 REMARK 3 S31: 0.1502 S32: -0.7251 S33: -0.4074 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 3 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3187 9.6660 44.4625 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.1375 REMARK 3 T33: 0.2394 T12: -0.0087 REMARK 3 T13: -0.0090 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 2.9474 L22: 1.0464 REMARK 3 L33: 1.8282 L12: 0.3294 REMARK 3 L13: 1.0177 L23: 0.0109 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: -0.1510 S13: -0.2367 REMARK 3 S21: 0.0533 S22: -0.0067 S23: -0.1017 REMARK 3 S31: 0.1819 S32: -0.0469 S33: -0.0870 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 116 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4375 21.0235 70.1414 REMARK 3 T TENSOR REMARK 3 T11: 0.2094 T22: 0.4219 REMARK 3 T33: 0.2182 T12: -0.0174 REMARK 3 T13: 0.0222 T23: 0.0587 REMARK 3 L TENSOR REMARK 3 L11: 1.8935 L22: 2.5359 REMARK 3 L33: 3.3023 L12: -0.3393 REMARK 3 L13: 0.5028 L23: 1.2306 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: -0.7085 S13: -0.1132 REMARK 3 S21: 0.3342 S22: 0.0318 S23: -0.0573 REMARK 3 S31: 0.0148 S32: -0.0617 S33: -0.1379 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7463 32.9925 37.9427 REMARK 3 T TENSOR REMARK 3 T11: 0.1429 T22: 0.1436 REMARK 3 T33: 0.1892 T12: -0.0231 REMARK 3 T13: 0.0092 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 1.7359 L22: 8.6577 REMARK 3 L33: 9.2936 L12: -1.4223 REMARK 3 L13: -1.4053 L23: 8.6078 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.0883 S13: 0.0155 REMARK 3 S21: 0.0032 S22: 0.1038 S23: -0.2124 REMARK 3 S31: -0.0117 S32: 0.1571 S33: -0.0916 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 27 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.4845 25.6320 35.2179 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.1564 REMARK 3 T33: 0.2311 T12: 0.0152 REMARK 3 T13: -0.0010 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.8443 L22: 0.6585 REMARK 3 L33: 9.8593 L12: 0.7235 REMARK 3 L13: 0.3296 L23: 0.2320 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: 0.0530 S13: -0.0464 REMARK 3 S21: -0.0197 S22: 0.0067 S23: -0.0003 REMARK 3 S31: 0.0780 S32: -0.0205 S33: 0.0037 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 40 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8025 31.1144 40.9326 REMARK 3 T TENSOR REMARK 3 T11: 0.1807 T22: 0.1716 REMARK 3 T33: 0.2172 T12: 0.0094 REMARK 3 T13: 0.0037 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.7796 L22: 1.3511 REMARK 3 L33: 1.3292 L12: -0.0846 REMARK 3 L13: -0.0235 L23: 1.1944 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: -0.0738 S13: 0.0603 REMARK 3 S21: 0.0259 S22: -0.0420 S23: 0.0382 REMARK 3 S31: -0.1841 S32: -0.0979 S33: 0.0094 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 77 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6429 27.4925 41.3499 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.1419 REMARK 3 T33: 0.1746 T12: 0.0004 REMARK 3 T13: 0.0131 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 0.5586 L22: 8.4662 REMARK 3 L33: 5.2759 L12: 0.5190 REMARK 3 L13: 0.3961 L23: 6.3444 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: -0.0008 S13: 0.0058 REMARK 3 S21: -0.0665 S22: 0.0472 S23: -0.0535 REMARK 3 S31: -0.0049 S32: 0.0673 S33: 0.0137 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 103 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6577 39.9737 53.4469 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.1684 REMARK 3 T33: 0.2092 T12: 0.0371 REMARK 3 T13: -0.0267 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 9.2880 L22: 5.8570 REMARK 3 L33: 4.5939 L12: 6.4969 REMARK 3 L13: 4.9057 L23: 4.8398 REMARK 3 S TENSOR REMARK 3 S11: -0.1171 S12: -0.3046 S13: 0.3197 REMARK 3 S21: 0.1770 S22: 0.0436 S23: 0.1384 REMARK 3 S31: -0.0354 S32: -0.0414 S33: 0.0391 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.7671 22.6150 71.7501 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.4366 REMARK 3 T33: 0.2416 T12: -0.0255 REMARK 3 T13: -0.0204 T23: 0.0815 REMARK 3 L TENSOR REMARK 3 L11: 3.6860 L22:2.9197731 REMARK 3 L33: 6.4865 L12: -1.5382 REMARK 3 L13: 1.7505 L23: -3.8760 REMARK 3 S TENSOR REMARK 3 S11: 0.0622 S12: -0.6697 S13: -0.3817 REMARK 3 S21: 0.6958 S22: -0.1211 S23: -0.0204 REMARK 3 S31: 0.0365 S32: 0.1595 S33: 0.0140 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 130 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2145 31.6536 59.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.2206 REMARK 3 T33: 0.1534 T12: -0.0153 REMARK 3 T13: -0.0176 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 7.3951 L22: 7.8514 REMARK 3 L33: 2.4187 L12: -7.0440 REMARK 3 L13: 3.0135 L23: -2.6980 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: -0.0525 S13: -0.0453 REMARK 3 S21: -0.2036 S22: -0.0233 S23: 0.1949 REMARK 3 S31: -0.0260 S32: 0.1197 S33: -0.0801 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 152 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.9269 25.8329 57.5036 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.2379 REMARK 3 T33: 0.1006 T12: 0.0060 REMARK 3 T13: 0.0012 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 8.7871 L22: 4.7573 REMARK 3 L33: 2.0614 L12: -1.9616 REMARK 3 L13: -2.4978 L23: -0.8518 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.0659 S13: -0.3229 REMARK 3 S21: 0.0072 S22: -0.0672 S23: -0.1417 REMARK 3 S31: -0.0359 S32: 0.1007 S33: 0.0434 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 165 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.3558 27.1910 62.6242 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.2906 REMARK 3 T33: 0.1441 T12: -0.0114 REMARK 3 T13: 0.0263 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 5.5631 L22: 5.7358 REMARK 3 L33: 2.7892 L12: -3.7127 REMARK 3 L13: 2.5407 L23: -1.5344 REMARK 3 S TENSOR REMARK 3 S11: 0.0946 S12: -0.0819 S13: -0.5148 REMARK 3 S21: 0.0300 S22: -0.0831 S23: 0.3272 REMARK 3 S31: -0.0956 S32: -0.0149 S33: 0.0074 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000280452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 138688 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 38.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM PHOSPHATE DIBASIC, 20% REMARK 280 W/V POLYETHYLENE GLYCOL 3350, PH 8.0., VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.99500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.18500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.99500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.18500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: R, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU H 1 REMARK 465 ILE H 2 REMARK 465 LYS H 230 REMARK 465 HIS H 231 REMARK 465 THR H 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR H 57 -26.83 69.40 REMARK 500 SER H 108 24.30 -144.73 REMARK 500 SER L 31 -130.83 48.19 REMARK 500 ALA L 52 -29.56 69.20 REMARK 500 ALA L 85 -179.75 -173.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 8VM8 R 1 93 PDB 8VM8 8VM8 1 93 DBREF 8VM8 H 1 232 PDB 8VM8 8VM8 1 232 DBREF 8VM8 L 1 215 PDB 8VM8 8VM8 1 215 SEQRES 1 R 93 G G U A A A A C A G C C U SEQRES 2 R 93 G U G G G U U G A U C C C SEQRES 3 R 93 A C C C A C A G G G C C C SEQRES 4 R 93 A U U G G G C G C U A G C SEQRES 5 R 93 A C U C U G G U A U G A A SEQRES 6 R 93 A C A C G U A C C U U U G SEQRES 7 R 93 U G C G C C U G U U U U A SEQRES 8 R 93 C C SEQRES 1 H 232 GLU ILE SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 H 232 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 H 232 ALA SER GLY PHE TYR ILE SER TYR SER SER ILE HIS TRP SEQRES 4 H 232 VAL ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SEQRES 5 H 232 SER ILE SER PRO TYR SER GLY SER THR TYR TYR ALA ASP SEQRES 6 H 232 SER VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER SEQRES 7 H 232 LYS ASN THR ALA TYR LEU GLN MET ASN SER LEU ARG ALA SEQRES 8 H 232 GLU ASP THR ALA VAL TYR TYR CYS ALA ARG GLN GLY TYR SEQRES 9 H 232 ARG ARG ARG SER GLY ARG GLY PHE ASP TYR TRP GLY GLN SEQRES 10 H 232 GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 232 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 232 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 232 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 232 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 232 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 232 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 232 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 232 LYS VAL GLU PRO LYS SER CYS ASP LYS HIS THR SEQRES 1 L 215 SER ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER SEQRES 2 L 215 ALA SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SEQRES 3 L 215 SER GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SEQRES 5 L 215 SER SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 L 215 SER ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER SEQRES 7 L 215 LEU GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SEQRES 8 L 215 SER TYR SER PHE PRO SER THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS FORMUL 4 HOH *884(H2 O) HELIX 1 AA1 TYR H 31 SER H 35 5 5 HELIX 2 AA2 ARG H 90 THR H 94 5 5 HELIX 3 AA3 TYR H 104 GLY H 109 1 6 HELIX 4 AA4 SER H 168 ALA H 170 5 3 HELIX 5 AA5 SER H 199 LEU H 201 5 3 HELIX 6 AA6 LYS H 213 ASN H 216 5 4 HELIX 7 AA7 GLN L 80 PHE L 84 5 5 HELIX 8 AA8 SER L 122 SER L 128 1 7 HELIX 9 AA9 LYS L 184 GLU L 188 1 5 SHEET 1 AA1 4 GLN H 6 SER H 10 0 SHEET 2 AA1 4 LEU H 21 SER H 28 -1 O SER H 28 N GLN H 6 SHEET 3 AA1 4 THR H 81 MET H 86 -1 O MET H 86 N LEU H 21 SHEET 4 AA1 4 PHE H 71 ASP H 76 -1 N ASP H 76 O THR H 81 SHEET 1 AA2 6 GLY H 13 VAL H 15 0 SHEET 2 AA2 6 THR H 119 VAL H 123 1 O THR H 122 N VAL H 15 SHEET 3 AA2 6 ALA H 95 GLN H 102 -1 N TYR H 97 O THR H 119 SHEET 4 AA2 6 ILE H 37 GLN H 42 -1 N VAL H 40 O TYR H 98 SHEET 5 AA2 6 LEU H 48 ILE H 54 -1 O ALA H 52 N TRP H 39 SHEET 6 AA2 6 THR H 61 TYR H 63 -1 O TYR H 62 N SER H 53 SHEET 1 AA3 4 GLY H 13 VAL H 15 0 SHEET 2 AA3 4 THR H 119 VAL H 123 1 O THR H 122 N VAL H 15 SHEET 3 AA3 4 ALA H 95 GLN H 102 -1 N TYR H 97 O THR H 119 SHEET 4 AA3 4 PHE H 112 TRP H 115 -1 O TYR H 114 N ARG H 101 SHEET 1 AA4 4 SER H 132 LEU H 136 0 SHEET 2 AA4 4 THR H 147 TYR H 157 -1 O LEU H 153 N PHE H 134 SHEET 3 AA4 4 TYR H 188 PRO H 197 -1 O LEU H 190 N VAL H 154 SHEET 4 AA4 4 VAL H 175 THR H 177 -1 N HIS H 176 O VAL H 193 SHEET 1 AA5 4 THR H 143 SER H 144 0 SHEET 2 AA5 4 THR H 147 TYR H 157 -1 O THR H 147 N SER H 144 SHEET 3 AA5 4 TYR H 188 PRO H 197 -1 O LEU H 190 N VAL H 154 SHEET 4 AA5 4 VAL H 181 LEU H 182 -1 N VAL H 181 O SER H 189 SHEET 1 AA6 3 THR H 163 TRP H 166 0 SHEET 2 AA6 3 TYR H 206 HIS H 212 -1 O ASN H 209 N SER H 165 SHEET 3 AA6 3 THR H 217 VAL H 223 -1 O VAL H 219 N VAL H 210 SHEET 1 AA7 4 MET L 5 SER L 8 0 SHEET 2 AA7 4 VAL L 20 ALA L 26 -1 O THR L 23 N SER L 8 SHEET 3 AA7 4 ASP L 71 ILE L 76 -1 O LEU L 74 N ILE L 22 SHEET 4 AA7 4 PHE L 63 SER L 68 -1 N SER L 68 O ASP L 71 SHEET 1 AA8 6 SER L 11 ALA L 14 0 SHEET 2 AA8 6 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 12 SHEET 3 AA8 6 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AA8 6 VAL L 34 GLN L 39 -1 N GLN L 39 O THR L 86 SHEET 5 AA8 6 LYS L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA8 6 SER L 54 LEU L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AA9 4 SER L 11 ALA L 14 0 SHEET 2 AA9 4 THR L 103 ILE L 107 1 O GLU L 106 N LEU L 12 SHEET 3 AA9 4 THR L 86 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 AA9 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 THR L 130 PHE L 140 -1 O VAL L 134 N PHE L 119 SHEET 3 AB1 4 TYR L 174 SER L 183 -1 O LEU L 182 N ALA L 131 SHEET 4 AB1 4 SER L 160 VAL L 164 -1 N GLN L 161 O THR L 179 SHEET 1 AB2 4 ALA L 154 LEU L 155 0 SHEET 2 AB2 4 LYS L 146 VAL L 151 -1 N VAL L 151 O ALA L 154 SHEET 3 AB2 4 VAL L 192 THR L 198 -1 O GLU L 196 N GLN L 148 SHEET 4 AB2 4 VAL L 206 ASN L 211 -1 O VAL L 206 N VAL L 197 SSBOND 1 CYS H 25 CYS H 99 1555 1555 2.02 SSBOND 2 CYS H 152 CYS H 208 1555 1555 2.04 SSBOND 3 CYS H 228 CYS L 215 1555 1555 2.03 SSBOND 4 CYS L 24 CYS L 89 1555 1555 2.06 SSBOND 5 CYS L 135 CYS L 195 1555 1555 2.02 CISPEP 1 PHE H 158 PRO H 159 0 -8.21 CISPEP 2 GLU H 160 PRO H 161 0 0.11 CISPEP 3 SER L 8 PRO L 9 0 -6.68 CISPEP 4 PHE L 95 PRO L 96 0 -0.99 CISPEP 5 TYR L 141 PRO L 142 0 -0.95 CRYST1 145.990 80.370 87.340 90.00 111.17 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006850 0.000000 0.002653 0.00000 SCALE2 0.000000 0.012442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012278 0.00000