HEADER IMMUNE SYSTEM 26-JAN-24 8VTP TITLE STRUCTURE OF FABS1CE-EPR-1, A HIGH AFFINITY ANTIBODY FOR THE TITLE 2 ERYTHROPOEITIN RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: S1CE VARIANT OF FAB-EPR-1 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FAB PRODUCED BY RANDOMIZATION OF CDR REGIONS AND COMPND 6 COMPND 7 SELECTED BY PHAGE DISPLAY. FABS UTILIZE IMGT (LECLERC ET COMPND 7 AL., DEV COMPND 8 COMP IMMUNOL. 2003 JAN;27(1):55-77) NUMBERING; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: S1CE VARIANT OF FAB-EPR-1 LIGHT CHAIN; COMPND 10 CHAIN: G; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: FAB PRODUCED BY RANDOMIZATION OF CDR REGIONS AND COMPND 13 COMPND 7 SELECTED BY PHAGE DISPLAY. FABS UTILIZE IMGT (LECLERC ET COMPND 14 AL., DEV COMPND 8 COMP IMMUNOL. 2003 JAN;27(1):55-77) NUMBERING SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSCSTA; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PSCSTA KEYWDS PROLIFERATION, ENGINEERED ANTIBODY, HIGH-AFFINITY BINDING, ENHANCED KEYWDS 2 CRYSTALLIZATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,H.A.BRUCE,L.BLAZER,J.J.ADAMS,S.S.SIDHU REVDAT 1 10-JUL-24 8VTP 0 JRNL AUTH H.A.BRUCE,A.U.SINGER,L.L.BLAZER,K.LUU,L.PLODER,A.PAVLENCO, JRNL AUTH 2 I.KURINOV,J.J.ADAMS,S.S.SIDHU JRNL TITL ANTIGEN-BINDING FRAGMENTS WITH IMPROVED CRYSTAL LATTICE JRNL TITL 2 PACKING AND ENHANCED CONFORMATIONAL FLEXIBILITY AT THE ELBOW JRNL TITL 3 REGION AS CRYSTALLIZATION CHAPERONES. JRNL REF PROTEIN SCI. V. 33 E5081 2024 JRNL REFN ESSN 1469-896X JRNL PMID 38924648 JRNL DOI 10.1002/PRO.5081 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 62361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.7900 - 4.9600 1.00 2927 127 0.1600 0.1565 REMARK 3 2 4.9600 - 3.9400 1.00 2762 150 0.1276 0.1631 REMARK 3 3 3.9400 - 3.4400 1.00 2746 151 0.1573 0.1568 REMARK 3 4 3.4400 - 3.1200 1.00 2720 150 0.1692 0.1852 REMARK 3 5 3.1200 - 2.9000 1.00 2662 154 0.1832 0.1916 REMARK 3 6 2.9000 - 2.7300 1.00 2722 154 0.1899 0.2357 REMARK 3 7 2.7300 - 2.5900 1.00 2666 147 0.1894 0.2379 REMARK 3 8 2.5900 - 2.4800 1.00 2692 140 0.2043 0.2262 REMARK 3 9 2.4800 - 2.3800 1.00 2671 160 0.1968 0.2129 REMARK 3 10 2.3800 - 2.3000 1.00 2700 124 0.1950 0.2122 REMARK 3 11 2.3000 - 2.2300 1.00 2667 153 0.1891 0.2511 REMARK 3 12 2.2300 - 2.1700 1.00 2675 133 0.1930 0.2164 REMARK 3 13 2.1700 - 2.1100 1.00 2682 141 0.1879 0.2373 REMARK 3 14 2.1100 - 2.0600 1.00 2670 114 0.2014 0.2138 REMARK 3 15 2.0600 - 2.0100 1.00 2671 145 0.2158 0.2209 REMARK 3 16 2.0100 - 1.9700 1.00 2664 118 0.2054 0.2033 REMARK 3 17 1.9700 - 1.9300 1.00 2699 133 0.1976 0.2231 REMARK 3 18 1.9300 - 1.8900 1.00 2673 129 0.1981 0.2402 REMARK 3 19 1.8900 - 1.8600 1.00 2627 132 0.2056 0.2222 REMARK 3 20 1.8600 - 1.8300 1.00 2694 133 0.2401 0.2780 REMARK 3 21 1.8300 - 1.8000 1.00 2644 149 0.2701 0.2997 REMARK 3 22 1.8000 - 1.7700 1.00 2681 109 0.3155 0.3546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.211 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3412 REMARK 3 ANGLE : 0.952 4609 REMARK 3 CHIRALITY : 0.063 517 REMARK 3 PLANARITY : 0.010 586 REMARK 3 DIHEDRAL : 15.717 1204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9392 13.7776 3.7567 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.2864 REMARK 3 T33: 0.2164 T12: -0.0413 REMARK 3 T13: -0.0167 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 2.2541 L22: 2.2042 REMARK 3 L33: 2.0780 L12: -0.4548 REMARK 3 L13: 1.3018 L23: 0.2253 REMARK 3 S TENSOR REMARK 3 S11: -0.1333 S12: 0.0210 S13: -0.0723 REMARK 3 S21: 0.0525 S22: 0.1322 S23: 0.1123 REMARK 3 S31: 0.0693 S32: -0.1409 S33: -0.0008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0199 25.2767 30.4349 REMARK 3 T TENSOR REMARK 3 T11: 0.2272 T22: 0.1624 REMARK 3 T33: 0.1700 T12: 0.0080 REMARK 3 T13: 0.0375 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 4.0127 L22: 2.0479 REMARK 3 L33: 3.3706 L12: 0.6862 REMARK 3 L13: 1.1491 L23: -0.1821 REMARK 3 S TENSOR REMARK 3 S11: 0.2314 S12: -0.0170 S13: 0.1437 REMARK 3 S21: 0.4616 S22: 0.1766 S23: -0.3306 REMARK 3 S31: -0.0011 S32: 0.3336 S33: -0.4584 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4257 24.5429 32.7658 REMARK 3 T TENSOR REMARK 3 T11: 0.2074 T22: 0.1885 REMARK 3 T33: 0.2086 T12: 0.0015 REMARK 3 T13: 0.0243 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.2439 L22: 3.8898 REMARK 3 L33: 3.4452 L12: -0.3158 REMARK 3 L13: -0.0719 L23: 0.4501 REMARK 3 S TENSOR REMARK 3 S11: 0.1594 S12: -0.1148 S13: 0.0479 REMARK 3 S21: 0.3694 S22: -0.0445 S23: 0.1614 REMARK 3 S31: -0.0225 S32: 0.0776 S33: -0.1153 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3649 36.1930 3.1875 REMARK 3 T TENSOR REMARK 3 T11: 0.3929 T22: 0.3246 REMARK 3 T33: 0.4894 T12: -0.0245 REMARK 3 T13: -0.2013 T23: 0.1114 REMARK 3 L TENSOR REMARK 3 L11: 3.0318 L22: 3.8488 REMARK 3 L33: 2.3107 L12: 0.1192 REMARK 3 L13: 1.0255 L23: 0.3380 REMARK 3 S TENSOR REMARK 3 S11: -0.5144 S12: 0.3042 S13: 0.7953 REMARK 3 S21: -0.2988 S22: 0.2266 S23: 0.0553 REMARK 3 S31: -0.5206 S32: -0.0833 S33: 0.2429 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 127 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2366 37.7865 26.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.2337 T22: 0.1802 REMARK 3 T33: 0.1470 T12: 0.0227 REMARK 3 T13: 0.0246 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 3.4178 L22: 4.5181 REMARK 3 L33: 1.9293 L12: -0.5773 REMARK 3 L13: 0.6965 L23: 0.1925 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: 0.1907 S13: 0.0203 REMARK 3 S21: -0.1342 S22: -0.0613 S23: -0.1608 REMARK 3 S31: -0.1281 S32: 0.1229 S33: 0.0890 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000280013. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72770 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 129.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 1.90200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE, 0.1 M BIS TRIS REMARK 280 PH 5.5, 17% PEG10K, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.37500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.79050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.46900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.79050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.37500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.46900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 231 REMARK 465 LYS A 232 REMARK 465 THR A 233 REMARK 465 HIS A 234 REMARK 465 THR A 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 1 CG CD OE1 OE2 REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 LYS A 215 CD CE NZ REMARK 470 ASP G 1 CG OD1 OD2 REMARK 470 TYR G 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS G 189 CG CD CE NZ REMARK 470 CYS G 232 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 59 -58.78 71.91 REMARK 500 ALA A 100 160.97 178.53 REMARK 500 ALA A 114 -159.83 -134.67 REMARK 500 ASP A 158 60.52 62.91 REMARK 500 ALA G 57 -39.84 71.03 REMARK 500 ALA G 100 -176.21 -177.04 REMARK 500 TYR G 109 -118.54 50.52 REMARK 500 ASN G 158 71.77 56.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 35 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 607 DISTANCE = 6.56 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 311 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 44 OE1 REMARK 620 2 TYR A 103 OH 76.9 REMARK 620 3 HOH A 475 O 106.1 172.2 REMARK 620 4 HOH A 508 O 128.5 62.2 118.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 310 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 137 O REMARK 620 2 PRO G 139 O 111.1 REMARK 620 3 HOH G 556 O 117.4 99.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 313 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 207 OG1 REMARK 620 2 EDO A 303 O1 120.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 312 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 405 O REMARK 620 2 HOH A 425 O 93.8 REMARK 620 3 HOH A 430 O 93.6 153.1 REMARK 620 4 HOH A 531 O 140.8 85.6 72.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8VTR RELATED DB: PDB REMARK 900 RELATED ID: 8VU1 RELATED DB: PDB REMARK 900 RELATED ID: 8VU4 RELATED DB: PDB REMARK 900 RELATED ID: 8VUA RELATED DB: PDB REMARK 900 RELATED ID: 8VUC RELATED DB: PDB DBREF 8VTP A 1 235 PDB 8VTP 8VTP 1 235 DBREF 8VTP G 1 232 PDB 8VTP 8VTP 1 232 SEQRES 1 A 224 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 224 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 224 PHE ASN LEU ARG SER TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 A 224 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 A 224 PRO TYR TYR SER TYR THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 224 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 A 224 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 224 ALA VAL TYR TYR CYS ALA ARG HIS GLY TYR GLY ALA MET SEQRES 9 A 224 ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL PHE ASN SEQRES 10 A 224 GLN ILE LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 A 224 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 A 224 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 A 224 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 A 224 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 A 224 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 A 224 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 A 224 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 18 A 224 THR HIS THR SEQRES 1 G 212 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 G 212 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 G 212 GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 G 212 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 G 212 SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 G 212 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 G 212 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 G 212 SER TYR SER LEU ILE THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 G 212 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 G 212 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 G 212 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 G 212 ALA LYS VAL SER TRP TYR VAL ASP ASN ALA LEU GLN SER SEQRES 13 G 212 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 G 212 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 G 212 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 G 212 VAL THR GLN GLY THR THR SER VAL THR LYS SER PHE ASN SEQRES 17 G 212 ARG GLY GLU CYS HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET ACT A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET CL A 308 1 HET CL A 309 1 HET NA A 310 1 HET NA A 311 1 HET NA A 312 1 HET NA A 313 1 HET NH4 G 301 1 HET EDO G 302 4 HET ACT G 303 4 HET EDO G 304 4 HET EDO G 305 4 HET ACT G 306 4 HET EDO G 307 4 HET EDO G 308 4 HET EDO G 309 4 HET EDO G 310 4 HET EDO G 311 4 HET ACT G 312 4 HET PEG G 313 7 HET EDO G 314 4 HET EDO G 315 4 HET CL G 316 1 HET NA G 317 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM NH4 AMMONIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 16(C2 H6 O2) FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 10 CL 3(CL 1-) FORMUL 12 NA 5(NA 1+) FORMUL 16 NH4 H4 N 1+ FORMUL 28 PEG C4 H10 O3 FORMUL 33 HOH *368(H2 O) HELIX 1 AA1 ASN A 29 TYR A 37 5 5 HELIX 2 AA2 ARG A 95 THR A 99 5 5 HELIX 3 AA3 SER A 170 ALA A 172 5 3 HELIX 4 AA4 SER A 201 LEU A 203 5 3 HELIX 5 AA5 LYS A 215 ASN A 218 5 4 HELIX 6 AA6 GLN G 95 PHE G 99 5 5 HELIX 7 AA7 SER G 141 LYS G 146 1 6 HELIX 8 AA8 LYS G 203 HIS G 209 1 7 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 19 SER A 26 -1 O ALA A 24 N VAL A 5 SHEET 3 AA1 4 THR A 86 MET A 91 -1 O MET A 91 N LEU A 19 SHEET 4 AA1 4 PHE A 76 ASP A 81 -1 N THR A 77 O GLN A 90 SHEET 1 AA2 6 LEU A 12 VAL A 13 0 SHEET 2 AA2 6 THR A 122 VAL A 126 1 O THR A 125 N VAL A 13 SHEET 3 AA2 6 ALA A 100 GLY A 108 -1 N TYR A 102 O THR A 122 SHEET 4 AA2 6 MET A 39 GLN A 44 -1 N VAL A 42 O TYR A 103 SHEET 5 AA2 6 LEU A 50 ILE A 56 -1 O GLU A 51 N ARG A 43 SHEET 6 AA2 6 THR A 65 TYR A 67 -1 O TYR A 66 N SER A 55 SHEET 1 AA3 4 LEU A 12 VAL A 13 0 SHEET 2 AA3 4 THR A 122 VAL A 126 1 O THR A 125 N VAL A 13 SHEET 3 AA3 4 ALA A 100 GLY A 108 -1 N TYR A 102 O THR A 122 SHEET 4 AA3 4 ALA A 114 TRP A 118 -1 O TYR A 117 N ARG A 106 SHEET 1 AA4 4 SER A 134 LEU A 138 0 SHEET 2 AA4 4 THR A 149 TYR A 159 -1 O LEU A 155 N PHE A 136 SHEET 3 AA4 4 TYR A 190 PRO A 199 -1 O VAL A 198 N ALA A 150 SHEET 4 AA4 4 VAL A 177 THR A 179 -1 N HIS A 178 O VAL A 195 SHEET 1 AA5 4 SER A 134 LEU A 138 0 SHEET 2 AA5 4 THR A 149 TYR A 159 -1 O LEU A 155 N PHE A 136 SHEET 3 AA5 4 TYR A 190 PRO A 199 -1 O VAL A 198 N ALA A 150 SHEET 4 AA5 4 VAL A 183 LEU A 184 -1 N VAL A 183 O SER A 191 SHEET 1 AA6 3 THR A 165 TRP A 168 0 SHEET 2 AA6 3 ILE A 209 HIS A 214 -1 O ASN A 211 N SER A 167 SHEET 3 AA6 3 THR A 219 LYS A 224 -1 O VAL A 221 N VAL A 212 SHEET 1 AA7 4 MET G 4 SER G 7 0 SHEET 2 AA7 4 VAL G 19 ALA G 25 -1 O ARG G 24 N THR G 5 SHEET 3 AA7 4 ASP G 86 ILE G 91 -1 O PHE G 87 N CYS G 23 SHEET 4 AA7 4 PHE G 76 SER G 83 -1 N SER G 77 O THR G 90 SHEET 1 AA8 6 SER G 10 ALA G 13 0 SHEET 2 AA8 6 THR G 122 ILE G 126 1 O GLU G 125 N LEU G 11 SHEET 3 AA8 6 THR G 101 SER G 108 -1 N TYR G 102 O THR G 122 SHEET 4 AA8 6 VAL G 39 GLN G 44 -1 N TYR G 42 O TYR G 103 SHEET 5 AA8 6 LYS G 51 TYR G 55 -1 O LEU G 53 N TRP G 41 SHEET 6 AA8 6 SER G 66 LEU G 67 -1 O SER G 66 N TYR G 55 SHEET 1 AA9 4 SER G 10 ALA G 13 0 SHEET 2 AA9 4 THR G 122 ILE G 126 1 O GLU G 125 N LEU G 11 SHEET 3 AA9 4 THR G 101 SER G 108 -1 N TYR G 102 O THR G 122 SHEET 4 AA9 4 LEU G 115 PHE G 118 -1 O THR G 117 N GLN G 106 SHEET 1 AB1 4 SER G 134 PHE G 138 0 SHEET 2 AB1 4 THR G 149 PHE G 159 -1 O LEU G 155 N PHE G 136 SHEET 3 AB1 4 TYR G 193 SER G 202 -1 O LEU G 195 N LEU G 156 SHEET 4 AB1 4 SER G 179 VAL G 183 -1 N SER G 182 O SER G 196 SHEET 1 AB2 4 ALA G 173 LEU G 174 0 SHEET 2 AB2 4 LYS G 165 VAL G 170 -1 N VAL G 170 O ALA G 173 SHEET 3 AB2 4 VAL G 211 GLN G 218 -1 O GLU G 215 N SER G 167 SHEET 4 AB2 4 THR G 221 ASN G 228 -1 O VAL G 223 N VAL G 216 SSBOND 1 CYS A 23 CYS A 104 1555 1555 2.05 SSBOND 2 CYS A 154 CYS A 210 1555 1555 2.05 SSBOND 3 CYS G 23 CYS G 104 1555 1555 2.04 SSBOND 4 CYS G 154 CYS G 214 1555 1555 2.03 LINK OE1 GLN A 44 NA NA A 311 1555 1555 2.76 LINK OH TYR A 103 NA NA A 311 1555 1555 3.09 LINK O PRO A 137 NA NA A 310 1555 1555 3.17 LINK OG1 THR A 207 NA NA A 313 1555 1555 3.03 LINK O1 EDO A 303 NA NA A 313 1555 1555 2.91 LINK NA NA A 310 O PRO G 139 1555 1555 2.79 LINK NA NA A 310 O HOH G 556 1555 1555 2.78 LINK NA NA A 311 O HOH A 475 1555 1555 2.70 LINK NA NA A 311 O HOH A 508 1555 1555 3.11 LINK NA NA A 312 O HOH A 405 1555 1555 2.07 LINK NA NA A 312 O HOH A 425 1555 1555 2.31 LINK NA NA A 312 O HOH A 430 1555 1555 2.58 LINK NA NA A 312 O HOH A 531 1555 1555 2.27 LINK O SER G 9 NA NA G 317 1555 1555 3.19 CISPEP 1 PHE A 160 PRO A 161 0 -9.70 CISPEP 2 GLU A 162 PRO A 163 0 1.24 CISPEP 3 SER G 7 PRO G 8 0 -5.56 CISPEP 4 TYR G 160 PRO G 161 0 -0.66 CRYST1 66.750 72.938 129.581 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014981 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007717 0.00000