HEADER RNA BINDING PROTEIN/RNA 27-JAN-24 8VU0 TITLE CO-CRYSTAL STRUCTURE OF AQUIFEX AEOLICUS TRBP111 IN COMPLEX WITH E. TITLE 2 COLI TRNA-ILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (76-MER); COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: METHIONYL-TRNA SYNTHETASE BETA SUBUNIT; COMPND 7 CHAIN: B, A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 7 ORGANISM_TAXID: 63363; SOURCE 8 GENE: METG', AQ_422; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OB FOLD, EMAPII-LIKE DOMAIN, TRNA-BINDING, RNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.UMUHIRE JURU,J.ZHANG REVDAT 1 07-AUG-24 8VU0 0 JRNL AUTH A.UMUHIRE JURU,R.GHIRLANDO,J.ZHANG JRNL TITL STRUCTURAL BASIS OF TRNA RECOGNITION BY THE WIDESPREAD OB JRNL TITL 2 FOLD. JRNL REF NAT COMMUN V. 15 6385 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39075051 JRNL DOI 10.1038/S41467-024-50730-1 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 26530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0900 - 5.4900 0.98 2861 161 0.1486 0.1568 REMARK 3 2 5.4900 - 4.3600 0.98 2818 148 0.1347 0.1706 REMARK 3 3 4.3600 - 3.8100 0.99 2801 141 0.1530 0.1869 REMARK 3 4 3.8100 - 3.4600 0.99 2823 148 0.1683 0.2345 REMARK 3 5 3.4600 - 3.2100 1.00 2821 133 0.2135 0.2636 REMARK 3 6 3.2100 - 3.0200 0.98 2755 145 0.2347 0.2898 REMARK 3 7 3.0200 - 2.8700 0.99 2771 137 0.2515 0.3455 REMARK 3 8 2.8700 - 2.7500 0.99 2781 155 0.3120 0.3877 REMARK 3 9 2.7500 - 2.6400 0.99 2780 151 0.3792 0.3978 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.452 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.923 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5288 REMARK 3 ANGLE : 0.739 7894 REMARK 3 CHIRALITY : 0.043 1032 REMARK 3 PLANARITY : 0.005 430 REMARK 3 DIHEDRAL : 13.568 2046 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9967 -40.2811 -21.0923 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.2841 REMARK 3 T33: 0.4042 T12: 0.0234 REMARK 3 T13: 0.0106 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 7.4651 L22: 8.8674 REMARK 3 L33: 2.8285 L12: 0.0357 REMARK 3 L13: 0.8613 L23: 0.5413 REMARK 3 S TENSOR REMARK 3 S11: -0.3845 S12: -0.0055 S13: -0.0919 REMARK 3 S21: -0.1067 S22: -0.1651 S23: -0.4094 REMARK 3 S31: 0.5090 S32: 0.4412 S33: 0.4812 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9526 -42.3961 -24.6890 REMARK 3 T TENSOR REMARK 3 T11: 0.3748 T22: 0.4276 REMARK 3 T33: 0.4562 T12: -0.0142 REMARK 3 T13: 0.0229 T23: -0.0863 REMARK 3 L TENSOR REMARK 3 L11: 8.8783 L22: 7.2574 REMARK 3 L33: 6.8041 L12: 4.7150 REMARK 3 L13: -4.3604 L23: -6.0795 REMARK 3 S TENSOR REMARK 3 S11: -0.4111 S12: 0.3776 S13: 0.3831 REMARK 3 S21: -0.5163 S22: 1.1853 S23: 1.0279 REMARK 3 S31: -0.3176 S32: -0.6631 S33: -0.3425 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.2257 -24.4891 -19.9825 REMARK 3 T TENSOR REMARK 3 T11: 0.4356 T22: 0.3079 REMARK 3 T33: 0.3853 T12: 0.0192 REMARK 3 T13: 0.0155 T23: 0.0809 REMARK 3 L TENSOR REMARK 3 L11: 6.8206 L22: 7.9424 REMARK 3 L33: 5.2313 L12: 4.4696 REMARK 3 L13: 0.4674 L23: 4.0803 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: 0.2023 S13: 0.2462 REMARK 3 S21: 0.3783 S22: 0.2571 S23: 0.0979 REMARK 3 S31: -0.4356 S32: 0.0200 S33: -0.2820 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6131 -20.1817 -3.7393 REMARK 3 T TENSOR REMARK 3 T11: 0.4955 T22: 0.5535 REMARK 3 T33: 0.3966 T12: -0.0553 REMARK 3 T13: -0.0983 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 2.0177 L22: 4.5959 REMARK 3 L33: 4.3378 L12: -1.0281 REMARK 3 L13: -1.5207 L23: -3.7329 REMARK 3 S TENSOR REMARK 3 S11: -0.3068 S12: -1.5092 S13: 0.7434 REMARK 3 S21: 1.6354 S22: -0.5031 S23: -0.6148 REMARK 3 S31: -0.8615 S32: -0.7663 S33: 0.7517 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6390 -21.3543 -17.8988 REMARK 3 T TENSOR REMARK 3 T11: 0.4591 T22: 0.4441 REMARK 3 T33: 0.5003 T12: 0.0350 REMARK 3 T13: -0.0996 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 2.3933 L22: 3.1015 REMARK 3 L33: 3.4277 L12: -1.5677 REMARK 3 L13: -2.4086 L23: 3.0159 REMARK 3 S TENSOR REMARK 3 S11: -0.1360 S12: -0.2884 S13: -0.0417 REMARK 3 S21: -0.2904 S22: -0.3109 S23: 0.1609 REMARK 3 S31: -1.3362 S32: -0.5941 S33: 0.6453 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8069 -22.4299 -23.8095 REMARK 3 T TENSOR REMARK 3 T11: 0.5589 T22: 0.6003 REMARK 3 T33: 0.6048 T12: 0.0687 REMARK 3 T13: -0.0851 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 4.6141 L22: 8.5579 REMARK 3 L33: 5.6323 L12: -4.3789 REMARK 3 L13: -4.9513 L23: 5.5103 REMARK 3 S TENSOR REMARK 3 S11: 0.4744 S12: 0.5698 S13: 0.5348 REMARK 3 S21: -0.9946 S22: -0.5779 S23: 0.6498 REMARK 3 S31: -2.2509 S32: -0.6438 S33: 0.0831 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.7608 -27.8678 -15.4351 REMARK 3 T TENSOR REMARK 3 T11: 0.2710 T22: 0.3090 REMARK 3 T33: 0.5224 T12: 0.0115 REMARK 3 T13: -0.0724 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.9246 L22: 2.9882 REMARK 3 L33: 3.7733 L12: -0.3227 REMARK 3 L13: -1.5994 L23: 1.1018 REMARK 3 S TENSOR REMARK 3 S11: -0.1491 S12: 0.0318 S13: 0.4649 REMARK 3 S21: -0.0385 S22: -0.0507 S23: 0.1029 REMARK 3 S31: -0.1795 S32: 0.3799 S33: 0.1223 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2895 -20.1984 -13.5254 REMARK 3 T TENSOR REMARK 3 T11: 0.3613 T22: 0.4833 REMARK 3 T33: 0.5064 T12: 0.0895 REMARK 3 T13: -0.0214 T23: -0.0956 REMARK 3 L TENSOR REMARK 3 L11: 4.5106 L22: 9.3908 REMARK 3 L33: 3.8899 L12: 5.1736 REMARK 3 L13: 4.0646 L23: 5.1946 REMARK 3 S TENSOR REMARK 3 S11: -0.0554 S12: 0.2650 S13: 0.6661 REMARK 3 S21: -0.2950 S22: 0.0171 S23: 0.3934 REMARK 3 S31: -0.7241 S32: 0.0105 S33: 0.1682 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6842 -34.1260 -14.1258 REMARK 3 T TENSOR REMARK 3 T11: 0.6253 T22: 0.2957 REMARK 3 T33: 0.5384 T12: 0.0958 REMARK 3 T13: 0.1492 T23: -0.0989 REMARK 3 L TENSOR REMARK 3 L11: 6.9274 L22: 6.3300 REMARK 3 L33: 3.8596 L12: 2.3003 REMARK 3 L13: -2.2861 L23: -4.9229 REMARK 3 S TENSOR REMARK 3 S11: -0.3843 S12: -0.6287 S13: -0.5629 REMARK 3 S21: 0.6319 S22: -0.8946 S23: 0.4041 REMARK 3 S31: 1.0442 S32: -0.0154 S33: 1.3001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1250 -36.2667 -21.3033 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.3058 REMARK 3 T33: 0.3929 T12: 0.0269 REMARK 3 T13: -0.0283 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 8.1097 L22: 8.4743 REMARK 3 L33: 9.0795 L12: 0.4314 REMARK 3 L13: -1.5940 L23: 0.4375 REMARK 3 S TENSOR REMARK 3 S11: -0.1007 S12: 0.2600 S13: 0.1393 REMARK 3 S21: -0.0588 S22: 0.1191 S23: 0.0028 REMARK 3 S31: 0.0219 S32: 0.5718 S33: -0.0518 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7863 16.5911 4.7010 REMARK 3 T TENSOR REMARK 3 T11: 0.3592 T22: 0.4183 REMARK 3 T33: 0.4790 T12: 0.0419 REMARK 3 T13: 0.0712 T23: -0.0526 REMARK 3 L TENSOR REMARK 3 L11: 2.3250 L22: 3.4730 REMARK 3 L33: 1.5132 L12: -0.4546 REMARK 3 L13: 1.6732 L23: -0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.1046 S12: -0.1130 S13: -0.3196 REMARK 3 S21: 0.1049 S22: 0.1960 S23: 0.1367 REMARK 3 S31: 0.1459 S32: -0.2142 S33: -0.0203 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 31 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7181 26.4766 10.8801 REMARK 3 T TENSOR REMARK 3 T11: 0.4192 T22: 0.9050 REMARK 3 T33: 0.8807 T12: 0.1186 REMARK 3 T13: 0.0087 T23: -0.1355 REMARK 3 L TENSOR REMARK 3 L11: 0.6523 L22: -0.1196 REMARK 3 L33: -0.4982 L12: 0.1293 REMARK 3 L13: 0.7037 L23: 0.3263 REMARK 3 S TENSOR REMARK 3 S11: -0.4311 S12: -1.2092 S13: 0.9525 REMARK 3 S21: 0.1184 S22: 0.2897 S23: -0.1309 REMARK 3 S31: 0.0277 S32: -0.3565 S33: 0.1964 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 51 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7135 4.7535 5.1238 REMARK 3 T TENSOR REMARK 3 T11: 0.3834 T22: 0.4878 REMARK 3 T33: 0.5640 T12: -0.0218 REMARK 3 T13: -0.0337 T23: -0.0702 REMARK 3 L TENSOR REMARK 3 L11: 0.1874 L22: 8.2730 REMARK 3 L33: 0.3424 L12: 0.2689 REMARK 3 L13: -0.5631 L23: 0.6386 REMARK 3 S TENSOR REMARK 3 S11: 0.1206 S12: 0.0134 S13: -0.2117 REMARK 3 S21: 0.2283 S22: -0.3053 S23: 0.0217 REMARK 3 S31: 0.0871 S32: -0.0501 S33: 0.1722 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9309 -93.8196 -47.9258 REMARK 3 T TENSOR REMARK 3 T11: 0.4175 T22: 0.4427 REMARK 3 T33: 0.5415 T12: -0.0534 REMARK 3 T13: -0.0846 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 2.7390 L22: 2.0390 REMARK 3 L33: 2.0379 L12: -0.0224 REMARK 3 L13: -1.7262 L23: -0.4590 REMARK 3 S TENSOR REMARK 3 S11: -0.2377 S12: 0.0312 S13: 0.0299 REMARK 3 S21: -0.2185 S22: 0.3815 S23: 0.2374 REMARK 3 S31: -0.2352 S32: -0.4924 S33: 0.0038 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 31 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3508-103.6421 -54.3972 REMARK 3 T TENSOR REMARK 3 T11: 0.4555 T22: 0.8980 REMARK 3 T33: 0.8465 T12: -0.1555 REMARK 3 T13: 0.0584 T23: -0.1311 REMARK 3 L TENSOR REMARK 3 L11: 1.5532 L22: -0.0887 REMARK 3 L33: -0.4023 L12: -0.1806 REMARK 3 L13: -1.0155 L23: 0.5064 REMARK 3 S TENSOR REMARK 3 S11: -0.4171 S12: 1.2992 S13: -1.1509 REMARK 3 S21: -0.1566 S22: 0.2250 S23: -0.0823 REMARK 3 S31: -0.1204 S32: -0.3191 S33: 0.1900 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 51 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9768 -83.1161 -48.5352 REMARK 3 T TENSOR REMARK 3 T11: 0.4836 T22: 0.4654 REMARK 3 T33: 0.5565 T12: -0.0106 REMARK 3 T13: 0.1272 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 0.3036 L22: 7.5081 REMARK 3 L33: 0.2080 L12: 0.6697 REMARK 3 L13: 0.8117 L23: 0.0164 REMARK 3 S TENSOR REMARK 3 S11: -0.0043 S12: 0.0906 S13: 0.2191 REMARK 3 S21: -0.2018 S22: -0.2283 S23: -0.2696 REMARK 3 S31: -0.1616 S32: 0.0210 S33: 0.1987 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4126 -36.1911 -18.6183 REMARK 3 T TENSOR REMARK 3 T11: 0.3736 T22: 0.4839 REMARK 3 T33: 0.5554 T12: 0.0000 REMARK 3 T13: 0.0284 T23: -0.0782 REMARK 3 L TENSOR REMARK 3 L11: 3.4698 L22: 4.3290 REMARK 3 L33: 9.4019 L12: 0.9352 REMARK 3 L13: -0.2628 L23: -6.2422 REMARK 3 S TENSOR REMARK 3 S11: -0.4023 S12: -0.4587 S13: -0.0070 REMARK 3 S21: -0.5544 S22: 0.6546 S23: 0.5583 REMARK 3 S31: 0.4795 S32: -1.3166 S33: -0.0585 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.2088 -54.0441 -27.8045 REMARK 3 T TENSOR REMARK 3 T11: 0.3483 T22: 0.3071 REMARK 3 T33: 0.5122 T12: 0.0591 REMARK 3 T13: -0.0374 T23: -0.0692 REMARK 3 L TENSOR REMARK 3 L11: 2.7411 L22: 4.4262 REMARK 3 L33: 7.2066 L12: 0.3666 REMARK 3 L13: 1.9795 L23: 1.7725 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: 0.3960 S13: -0.5972 REMARK 3 S21: 0.1095 S22: 0.3098 S23: -0.4545 REMARK 3 S31: 1.2639 S32: 0.7707 S33: -0.4583 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8377 -51.5148 -24.0581 REMARK 3 T TENSOR REMARK 3 T11: 0.4273 T22: 0.4045 REMARK 3 T33: 0.6828 T12: 0.0634 REMARK 3 T13: 0.0319 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 1.4018 L22: 1.8052 REMARK 3 L33: 6.6582 L12: 0.5388 REMARK 3 L13: -0.1993 L23: 1.6286 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.0965 S13: -0.1316 REMARK 3 S21: 0.2163 S22: -0.0285 S23: -0.2766 REMARK 3 S31: 0.5144 S32: 0.2172 S33: 0.0910 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5001 -53.8496 -26.5929 REMARK 3 T TENSOR REMARK 3 T11: 0.5472 T22: 0.4175 REMARK 3 T33: 0.5862 T12: -0.0156 REMARK 3 T13: 0.0676 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 4.7033 L22: 5.2419 REMARK 3 L33: 4.7992 L12: -4.8704 REMARK 3 L13: -4.5065 L23: 4.8147 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: 0.1823 S13: -0.9262 REMARK 3 S21: 0.1026 S22: -0.5075 S23: 1.0697 REMARK 3 S31: 0.4482 S32: -0.9034 S33: 0.6696 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "A" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "B" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 1 through 15 or REMARK 3 resid 18 through 76)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 1 through 15 or REMARK 3 resid 18 through 76)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VU0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000279756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26578 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 43.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM PHOSPHATE DIBASIC, 23% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 95.24750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.51400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 95.24750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.51400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 LYS B 4 REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 101 O HOH C 161 2.06 REMARK 500 O2' U D 47 OP1 G D 50 2.08 REMARK 500 O HOH D 120 O HOH D 156 2.11 REMARK 500 OE2 GLU A 44 NH1 ARG A 46 2.15 REMARK 500 OE2 GLU B 81 O HOH B 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 112 O HOH C 161 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 93 -77.34 -126.91 REMARK 500 GLU A 93 -81.35 -126.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 8VU0 C 1 76 PDB 8VU0 8VU0 1 76 DBREF 8VU0 D 1 76 PDB 8VU0 8VU0 1 76 DBREF 8VU0 B 1 111 UNP O66738 O66738_AQUAE 1 111 DBREF 8VU0 A 1 111 UNP O66738 O66738_AQUAE 1 111 SEQADV 8VU0 GLY B -1 UNP O66738 EXPRESSION TAG SEQADV 8VU0 PRO B 0 UNP O66738 EXPRESSION TAG SEQADV 8VU0 GLY A -1 UNP O66738 EXPRESSION TAG SEQADV 8VU0 PRO A 0 UNP O66738 EXPRESSION TAG SEQRES 1 C 76 G G G C U U G U A G C U C SEQRES 2 C 76 A G G U G G U U A G A G C SEQRES 3 C 76 G C A C C G C G A A A G C SEQRES 4 C 76 G G U G A G G U C G G U G SEQRES 5 C 76 G U U C A A G U C C A C U SEQRES 6 C 76 C A G G C C U A C C A SEQRES 1 D 76 G G G C U U G U A G C U C SEQRES 2 D 76 A G G U G G U U A G A G C SEQRES 3 D 76 G C A C C G C G A A A G C SEQRES 4 D 76 G G U G A G G U C G G U G SEQRES 5 D 76 G U U C A A G U C C A C U SEQRES 6 D 76 C A G G C C U A C C A SEQRES 1 B 113 GLY PRO MET GLU GLU LYS ALA LEU ILE GLY ILE GLU ASP SEQRES 2 B 113 PHE LEU LYS VAL ASP LEU ARG VAL ALA LYS VAL LEU SER SEQRES 3 B 113 ALA GLU ARG VAL GLU GLY SER GLU LYS LEU LEU LYS LEU SEQRES 4 B 113 THR LEU SER LEU GLY ASP GLU GLU ARG THR VAL VAL ALA SEQRES 5 B 113 GLY ILE ALA LYS TYR TYR THR PRO GLU GLU LEU VAL GLY SEQRES 6 B 113 LYS LYS ILE VAL ILE VAL ALA ASN LEU LYS PRO ARG LYS SEQRES 7 B 113 ILE PHE GLY ILE GLU SER GLN GLY MET ILE LEU ALA ALA SEQRES 8 B 113 SER ASP GLY GLU ASN LEU SER VAL ILE VAL PRO ASP ARG SEQRES 9 B 113 ASP VAL LYS GLU GLY ALA LYS LEU SER SEQRES 1 A 113 GLY PRO MET GLU GLU LYS ALA LEU ILE GLY ILE GLU ASP SEQRES 2 A 113 PHE LEU LYS VAL ASP LEU ARG VAL ALA LYS VAL LEU SER SEQRES 3 A 113 ALA GLU ARG VAL GLU GLY SER GLU LYS LEU LEU LYS LEU SEQRES 4 A 113 THR LEU SER LEU GLY ASP GLU GLU ARG THR VAL VAL ALA SEQRES 5 A 113 GLY ILE ALA LYS TYR TYR THR PRO GLU GLU LEU VAL GLY SEQRES 6 A 113 LYS LYS ILE VAL ILE VAL ALA ASN LEU LYS PRO ARG LYS SEQRES 7 A 113 ILE PHE GLY ILE GLU SER GLN GLY MET ILE LEU ALA ALA SEQRES 8 A 113 SER ASP GLY GLU ASN LEU SER VAL ILE VAL PRO ASP ARG SEQRES 9 A 113 ASP VAL LYS GLU GLY ALA LYS LEU SER FORMUL 5 HOH *201(H2 O) HELIX 1 AA1 GLY B 8 LYS B 14 1 7 HELIX 2 AA2 THR B 57 VAL B 62 1 6 HELIX 3 AA3 GLY A 8 LYS A 14 1 7 HELIX 4 AA4 THR A 57 VAL A 62 1 6 SHEET 1 AA1 5 GLU B 45 ALA B 50 0 SHEET 2 AA1 5 LEU B 35 SER B 40 -1 N LEU B 37 O VAL B 48 SHEET 3 AA1 5 LEU B 17 ARG B 27 -1 N LEU B 23 O THR B 38 SHEET 4 AA1 5 LYS B 65 VAL B 69 -1 O ILE B 66 N ALA B 20 SHEET 5 AA1 5 MET B 85 ILE B 86 -1 O MET B 85 N VAL B 69 SHEET 1 AA2 2 ARG B 75 ILE B 77 0 SHEET 2 AA2 2 ILE B 80 SER B 82 -1 O SER B 82 N ARG B 75 SHEET 1 AA3 6 LYS B 109 LEU B 110 0 SHEET 2 AA3 6 ALA A 88 SER A 90 -1 O SER A 90 N LYS B 109 SHEET 3 AA3 6 LEU A 95 PRO A 100 -1 O SER A 96 N ALA A 89 SHEET 4 AA3 6 LEU B 95 PRO B 100 -1 N VAL B 99 O VAL A 99 SHEET 5 AA3 6 ALA B 88 SER B 90 -1 N ALA B 89 O SER B 96 SHEET 6 AA3 6 LYS A 109 LEU A 110 -1 O LYS A 109 N SER B 90 SHEET 1 AA4 5 GLU A 45 ALA A 50 0 SHEET 2 AA4 5 LEU A 35 SER A 40 -1 N LEU A 37 O VAL A 48 SHEET 3 AA4 5 LEU A 17 ARG A 27 -1 N LEU A 23 O THR A 38 SHEET 4 AA4 5 LYS A 65 VAL A 69 -1 O ILE A 66 N ALA A 20 SHEET 5 AA4 5 MET A 85 ILE A 86 -1 O MET A 85 N VAL A 69 SHEET 1 AA5 2 ARG A 75 ILE A 77 0 SHEET 2 AA5 2 ILE A 80 SER A 82 -1 O SER A 82 N ARG A 75 CRYST1 190.495 55.028 87.160 90.00 94.42 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005249 0.000000 0.000406 0.00000 SCALE2 0.000000 0.018173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011507 0.00000